Wall clock time and date at job start Sat Apr 11 2020 04:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47094 * 240.00012 * 2 1 3 5 5 O 1.21278 * 120.00548 * 240.00156 * 4 2 1 6 6 N 1.34782 * 119.99764 * 60.00350 * 4 2 1 7 7 C 1.46499 * 120.00273 * 179.97438 * 6 4 2 8 8 C 1.52992 * 109.47658 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.46862 * 305.00512 * 8 7 6 10 10 C 1.53006 * 109.47223 * 64.99659 * 8 7 6 11 11 C 1.52997 * 109.47164 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46978 * 299.99874 * 11 10 8 13 13 H 1.08992 * 109.47056 * 300.00064 * 12 11 10 14 14 C 1.52997 * 109.46978 * 180.02562 * 12 11 10 15 15 N 1.46507 * 109.47321 * 65.00089 * 14 12 11 16 16 C 1.36929 * 120.00158 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00290 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99945 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00402 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99981 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47453 * 89.99786 * 20 18 16 22 22 H 1.48500 * 109.47309 * 209.99939 * 20 18 16 23 23 H 1.48498 * 109.47000 * 329.99867 * 20 18 16 24 24 C 1.52996 * 109.46891 * 60.00410 * 12 11 10 25 25 C 1.52997 * 109.47482 * 184.99947 * 8 7 6 26 26 C 1.53000 * 109.46867 * 120.00655 * 2 1 3 27 27 F 1.39896 * 109.47174 * 180.02562 * 26 2 1 28 28 F 1.39905 * 109.46696 * 299.99456 * 26 2 1 29 29 F 1.39894 * 109.47440 * 59.99489 * 26 2 1 30 30 H 1.09004 * 109.46908 * 59.99600 * 1 2 3 31 31 H 1.09000 * 109.47443 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47099 * 299.99723 * 1 2 3 33 33 H 0.97002 * 119.99790 * 359.97438 * 6 4 2 34 34 H 1.09001 * 109.46952 * 59.99319 * 7 6 4 35 35 H 1.09004 * 109.46722 * 300.00399 * 7 6 4 36 36 H 1.09001 * 109.47002 * 60.00080 * 10 8 7 37 37 H 1.09000 * 109.47050 * 300.00346 * 10 8 7 38 38 H 1.09002 * 109.47045 * 180.02562 * 11 10 8 39 39 H 1.09001 * 109.47375 * 59.99966 * 11 10 8 40 40 H 1.08994 * 109.47445 * 185.00212 * 14 12 11 41 41 H 1.09000 * 109.47459 * 305.00519 * 14 12 11 42 42 H 0.97003 * 119.99307 * 0.02562 * 15 14 12 43 43 H 0.96994 * 120.00179 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.47368 * 179.97438 * 24 12 11 45 45 H 1.09001 * 109.47372 * 59.99964 * 24 12 11 46 46 H 1.09002 * 109.47153 * 59.99783 * 25 8 7 47 47 H 1.09001 * 109.46832 * 299.99974 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1955 -0.9400 -3.6508 8 6 1.6860 -0.2185 -4.9000 9 1 0.5997 -0.1402 -4.8567 10 6 2.2961 1.1833 -4.9638 11 6 1.7861 1.9051 -6.2127 12 6 2.1909 1.1155 -7.4591 13 1 3.2772 1.0373 -7.5028 14 6 1.6815 1.8376 -8.7080 15 7 2.3562 3.1320 -8.8331 16 6 2.0600 3.9599 -9.8828 17 1 1.3287 3.6590 -10.6183 18 6 2.6997 5.1861 -10.0016 19 7 2.4147 5.9822 -11.0103 20 14 3.9652 5.7064 -8.7299 21 1 5.3113 5.2433 -9.1527 22 1 3.9662 7.1865 -8.6093 23 1 3.6241 5.1030 -7.4166 24 6 1.5808 -0.2861 -7.3953 25 6 2.0912 -1.0082 -6.1462 26 6 2.0400 -0.7214 1.2492 27 9 3.4389 -0.7209 1.2495 28 9 1.5737 -0.0619 2.3915 29 9 1.5736 -2.0403 1.2491 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.1488 0.5387 -2.5435 34 1 1.8326 -1.9679 -3.6510 35 1 3.2855 -0.9397 -3.6506 36 1 3.3824 1.1051 -5.0071 37 1 2.0074 1.7459 -4.0760 38 1 2.2211 2.9035 -6.2584 39 1 0.6998 1.9833 -6.1691 40 1 1.8917 1.2317 -9.5893 41 1 0.6062 1.9952 -8.6235 42 1 3.0134 3.4021 -8.1727 43 1 2.8620 6.8388 -11.0935 44 1 1.8688 -0.8486 -8.2835 45 1 0.4945 -0.2079 -7.3517 46 1 1.6566 -2.0068 -6.1007 47 1 3.1776 -1.0864 -6.1894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754834524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:17 Heat of formation + Delta-G solvation = -210.852816 kcal Electronic energy + Delta-G solvation = -29583.371666 eV Core-core repulsion = 24964.032360 eV Total energy + Delta-G solvation = -4619.339306 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.45408 -47.97261 -47.85828 -40.47618 -39.01408 -35.88898 -34.79393 -34.18758 -32.07272 -30.79671 -30.43435 -27.19274 -26.97628 -24.67708 -23.43245 -22.92098 -21.76570 -20.94755 -20.48791 -19.78015 -19.12085 -18.82863 -18.09598 -17.61425 -17.13711 -16.13837 -15.97335 -15.33111 -14.89245 -14.73812 -14.63123 -14.40212 -14.33938 -14.29109 -14.19525 -14.06742 -14.00272 -13.92239 -13.62404 -13.49214 -13.23075 -12.95138 -12.70013 -12.54433 -12.46434 -12.19347 -11.98789 -11.86535 -11.60856 -11.16937 -11.05180 -11.00413 -10.85569 -10.44836 -10.37414 -10.19056 -10.00568 -9.89814 -9.57161 -9.52756 -8.90218 -7.22769 -5.77903 -3.12796 2.00116 2.09116 2.59146 3.24384 3.34118 3.37420 3.43040 3.55550 3.66054 4.15439 4.26672 4.37478 4.41399 4.53961 4.57405 4.61194 4.81506 4.95221 4.98113 5.14847 5.16742 5.32013 5.34361 5.40217 5.44131 5.48625 5.53048 5.54365 5.59055 5.80371 5.86166 5.93540 5.99128 6.08099 6.15561 6.18543 6.24076 6.41682 6.51415 6.72338 6.82902 6.89014 7.59943 7.99218 8.41563 9.21076 9.93509 10.13852 11.40759 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.002107 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.162466 B =13283.071871 C =14118.826652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.165 4.165 3 H 0.141 0.859 4 C 0.520 3.480 5 O -0.520 6.520 6 N -0.717 5.717 7 C 0.123 3.877 8 C -0.098 4.098 9 H 0.078 0.922 10 C -0.115 4.115 11 C -0.112 4.112 12 C -0.098 4.098 13 H 0.068 0.932 14 C 0.161 3.839 15 N -0.756 5.756 16 C -0.242 4.242 17 H 0.089 0.911 18 C 0.002 3.998 19 N -0.935 5.935 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.278 1.278 24 C -0.109 4.109 25 C -0.109 4.109 26 C 0.473 3.527 27 F -0.173 7.173 28 F -0.181 7.181 29 F -0.172 7.172 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.404 0.596 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.713 -15.220 24.878 29.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 H 0.159 0.841 4 C 0.304 3.696 5 O -0.396 6.396 6 N -0.370 5.370 7 C 0.000 4.000 8 C -0.117 4.117 9 H 0.096 0.904 10 C -0.153 4.153 11 C -0.149 4.149 12 C -0.117 4.117 13 H 0.087 0.913 14 C 0.034 3.966 15 N -0.401 5.401 16 C -0.372 4.372 17 H 0.107 0.893 18 C -0.193 4.193 19 N -0.584 5.584 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.204 1.204 24 C -0.147 4.147 25 C -0.147 4.147 26 C 0.418 3.582 27 F -0.154 7.154 28 F -0.163 7.163 29 F -0.153 7.153 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.239 0.761 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.295 -15.879 24.755 29.722 hybrid contribution 0.782 0.954 0.959 1.562 sum -3.513 -14.925 25.714 29.938 Atomic orbital electron populations 1.21863 0.89077 1.04856 1.05082 1.22661 1.01508 1.03186 0.91399 0.84145 1.19726 0.80809 0.84755 0.84315 1.90832 1.36867 1.25436 1.86421 1.45890 1.53544 1.32261 1.05260 1.21564 0.99784 0.96094 0.82572 1.21444 1.00927 0.95811 0.93508 0.90363 1.21652 1.00765 0.94508 0.98342 1.21550 1.01058 0.99176 0.93132 1.21378 1.00436 0.94300 0.95575 0.91331 1.20668 0.95392 0.86662 0.93901 1.42738 1.49342 1.17740 1.30326 1.19075 1.19683 0.96956 1.01510 0.89297 1.24681 0.99900 0.96894 0.97858 1.69702 1.45930 1.11382 1.31347 0.86545 0.82396 0.77741 0.81791 1.21119 1.21760 1.20399 1.21497 1.00525 0.95583 0.97106 1.21489 1.01439 0.98171 0.93576 1.19737 0.76011 0.77879 0.84525 1.93228 1.29198 1.96339 1.96653 1.93193 1.88563 1.80825 1.53679 1.93208 1.88269 1.37167 1.96658 0.89605 0.90438 0.89724 0.76092 0.91100 0.91010 0.91773 0.92516 0.91329 0.91927 0.95665 0.95695 0.80694 0.93090 0.91622 0.91840 0.91846 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 8.85 37.16 0.33 -0.24 16 2 C -0.16 -1.00 2.71 -91.77 -0.25 -1.24 16 3 H 0.14 0.49 8.14 -51.93 -0.42 0.07 16 4 C 0.52 4.57 6.92 -10.98 -0.08 4.49 16 5 O -0.52 -6.81 14.84 5.56 0.08 -6.73 16 6 N -0.72 -4.87 5.18 -60.30 -0.31 -5.18 16 7 C 0.12 0.97 5.06 -4.05 -0.02 0.95 16 8 C -0.10 -0.76 2.22 -90.62 -0.20 -0.97 16 9 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 10 C -0.12 -1.08 5.08 -26.73 -0.14 -1.22 16 11 C -0.11 -1.41 5.08 -26.73 -0.14 -1.55 16 12 C -0.10 -1.35 2.22 -90.62 -0.20 -1.55 16 13 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 14 C 0.16 2.98 5.65 -4.04 -0.02 2.96 16 15 N -0.76 -17.61 5.13 -59.91 -0.31 -17.91 16 16 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 17 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 18 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 19 N -0.94 -29.35 13.97 55.49 0.78 -28.57 16 20 Si 0.88 21.91 27.74 -169.99 -4.71 17.19 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.28 -6.37 6.52 56.52 0.37 -6.01 16 24 C -0.11 -1.17 5.21 -26.71 -0.14 -1.31 16 25 C -0.11 -0.94 5.21 -26.71 -0.14 -1.08 16 26 C 0.47 4.16 2.42 37.16 0.09 4.25 16 27 F -0.17 -1.89 16.40 2.25 0.04 -1.85 16 28 F -0.18 -1.45 16.80 2.25 0.04 -1.41 16 29 F -0.17 -1.80 15.88 2.25 0.04 -1.77 16 30 H 0.09 0.17 7.56 -51.93 -0.39 -0.22 16 31 H 0.08 0.36 7.80 -51.93 -0.41 -0.04 16 32 H 0.08 0.24 7.80 -51.93 -0.41 -0.16 16 33 H 0.40 1.76 7.07 -40.82 -0.29 1.47 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.45 7.18 -51.93 -0.37 0.08 16 38 H 0.07 1.05 7.18 -51.93 -0.37 0.67 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.36 8.15 4.71 -40.82 -0.19 7.96 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -34.24 380.79 -7.30 -41.54 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.52 Total: 2.49 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.16 Total: -3.53 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.16 Total: -51.66 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: 0.08 Total: -6.73 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.11 Total: -5.04 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.24 -7.30 -41.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754834524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.313 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds