Wall clock time and date at job start Sat Apr 11 2020 04:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47094 * 240.00012 * 2 1 3 5 5 O 1.21278 * 120.00548 * 240.00156 * 4 2 1 6 6 N 1.34782 * 119.99764 * 60.00350 * 4 2 1 7 7 C 1.46499 * 120.00273 * 179.97438 * 6 4 2 8 8 C 1.52992 * 109.47658 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.46862 * 305.00512 * 8 7 6 10 10 C 1.53006 * 109.47223 * 64.99659 * 8 7 6 11 11 C 1.52997 * 109.47164 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46978 * 299.99874 * 11 10 8 13 13 H 1.08992 * 109.47056 * 300.00064 * 12 11 10 14 14 C 1.52997 * 109.46978 * 180.02562 * 12 11 10 15 15 N 1.46507 * 109.47321 * 65.00089 * 14 12 11 16 16 C 1.36929 * 120.00158 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00290 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99945 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00402 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99981 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47453 * 89.99786 * 20 18 16 22 22 H 1.48500 * 109.47309 * 209.99939 * 20 18 16 23 23 H 1.48498 * 109.47000 * 329.99867 * 20 18 16 24 24 C 1.52996 * 109.46891 * 60.00410 * 12 11 10 25 25 C 1.52997 * 109.47482 * 184.99947 * 8 7 6 26 26 C 1.53000 * 109.46867 * 120.00655 * 2 1 3 27 27 F 1.39896 * 109.47174 * 180.02562 * 26 2 1 28 28 F 1.39905 * 109.46696 * 299.99456 * 26 2 1 29 29 F 1.39894 * 109.47440 * 59.99489 * 26 2 1 30 30 H 1.09004 * 109.46908 * 59.99600 * 1 2 3 31 31 H 1.09000 * 109.47443 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47099 * 299.99723 * 1 2 3 33 33 H 0.97002 * 119.99790 * 359.97438 * 6 4 2 34 34 H 1.09001 * 109.46952 * 59.99319 * 7 6 4 35 35 H 1.09004 * 109.46722 * 300.00399 * 7 6 4 36 36 H 1.09001 * 109.47002 * 60.00080 * 10 8 7 37 37 H 1.09000 * 109.47050 * 300.00346 * 10 8 7 38 38 H 1.09002 * 109.47045 * 180.02562 * 11 10 8 39 39 H 1.09001 * 109.47375 * 59.99966 * 11 10 8 40 40 H 1.08994 * 109.47445 * 185.00212 * 14 12 11 41 41 H 1.09000 * 109.47459 * 305.00519 * 14 12 11 42 42 H 0.97003 * 119.99307 * 0.02562 * 15 14 12 43 43 H 0.96994 * 120.00179 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.47368 * 179.97438 * 24 12 11 45 45 H 1.09001 * 109.47372 * 59.99964 * 24 12 11 46 46 H 1.09002 * 109.47153 * 59.99783 * 25 8 7 47 47 H 1.09001 * 109.46832 * 299.99974 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1955 -0.9400 -3.6508 8 6 1.6860 -0.2185 -4.9000 9 1 0.5997 -0.1402 -4.8567 10 6 2.2961 1.1833 -4.9638 11 6 1.7861 1.9051 -6.2127 12 6 2.1909 1.1155 -7.4591 13 1 3.2772 1.0373 -7.5028 14 6 1.6815 1.8376 -8.7080 15 7 2.3562 3.1320 -8.8331 16 6 2.0600 3.9599 -9.8828 17 1 1.3287 3.6590 -10.6183 18 6 2.6997 5.1861 -10.0016 19 7 2.4147 5.9822 -11.0103 20 14 3.9652 5.7064 -8.7299 21 1 5.3113 5.2433 -9.1527 22 1 3.9662 7.1865 -8.6093 23 1 3.6241 5.1030 -7.4166 24 6 1.5808 -0.2861 -7.3953 25 6 2.0912 -1.0082 -6.1462 26 6 2.0400 -0.7214 1.2492 27 9 3.4389 -0.7209 1.2495 28 9 1.5737 -0.0619 2.3915 29 9 1.5736 -2.0403 1.2491 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.1488 0.5387 -2.5435 34 1 1.8326 -1.9679 -3.6510 35 1 3.2855 -0.9397 -3.6506 36 1 3.3824 1.1051 -5.0071 37 1 2.0074 1.7459 -4.0760 38 1 2.2211 2.9035 -6.2584 39 1 0.6998 1.9833 -6.1691 40 1 1.8917 1.2317 -9.5893 41 1 0.6062 1.9952 -8.6235 42 1 3.0134 3.4021 -8.1727 43 1 2.8620 6.8388 -11.0935 44 1 1.8688 -0.8486 -8.2835 45 1 0.4945 -0.2079 -7.3517 46 1 1.6566 -2.0068 -6.1007 47 1 3.1776 -1.0864 -6.1894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754834524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:16 Heat of formation + Delta-G solvation = -233.210453 kcal Electronic energy + Delta-G solvation = -29584.341166 eV Core-core repulsion = 24964.032360 eV Total energy + Delta-G solvation = -4620.308806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.13742 -48.63929 -48.59792 -41.14800 -39.91012 -37.10292 -35.73265 -35.09170 -33.68715 -31.93504 -31.60763 -28.34822 -27.43142 -25.90946 -24.34818 -23.99456 -23.01919 -21.67888 -21.47020 -20.68692 -19.78189 -19.62063 -19.50466 -18.71959 -17.76118 -16.79103 -16.70613 -16.52522 -16.21258 -15.85659 -15.56481 -15.45199 -15.21557 -15.04581 -14.98606 -14.90484 -14.77462 -14.71701 -14.64494 -14.53311 -14.18407 -13.96933 -13.71390 -13.53082 -13.29853 -13.01527 -12.97656 -12.92731 -12.61083 -12.42790 -12.33997 -12.13860 -11.93882 -11.84250 -11.76392 -11.29981 -11.19960 -11.00866 -10.90135 -10.81642 -10.16999 -9.27977 -8.03099 -5.35958 1.36115 1.38414 1.40550 1.47940 1.51158 2.01301 2.47932 2.64885 2.98943 3.09749 3.28183 3.59383 3.64145 3.70237 3.80850 3.84399 3.86221 3.99488 4.19486 4.31034 4.35590 4.57252 4.59619 4.62701 4.63937 4.67447 4.68506 4.78620 4.86031 4.95301 5.03698 5.11171 5.11433 5.22782 5.23722 5.28628 5.35131 5.36724 5.46539 5.57270 5.67853 5.76050 6.21584 6.35252 7.04062 7.08460 7.85706 8.05131 9.18721 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.002107 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.162466 B =13283.071871 C =14118.826652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.155 4.155 3 H 0.172 0.828 4 C 0.517 3.483 5 O -0.570 6.570 6 N -0.703 5.703 7 C 0.128 3.872 8 C -0.086 4.086 9 H 0.094 0.906 10 C -0.109 4.109 11 C -0.109 4.109 12 C -0.090 4.090 13 H 0.062 0.938 14 C 0.155 3.845 15 N -0.757 5.757 16 C -0.235 4.235 17 H 0.053 0.947 18 C -0.067 4.067 19 N -0.986 5.986 20 Si 0.956 3.044 21 H -0.280 1.280 22 H -0.295 1.295 23 H -0.248 1.248 24 C -0.103 4.103 25 C -0.106 4.106 26 C 0.464 3.536 27 F -0.190 7.190 28 F -0.177 7.177 29 F -0.186 7.186 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.419 0.581 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.067 0.933 40 H 0.017 0.983 41 H 0.023 0.977 42 H 0.366 0.634 43 H 0.258 0.742 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.067 -15.558 27.252 31.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 H 0.189 0.811 4 C 0.303 3.697 5 O -0.449 6.449 6 N -0.356 5.356 7 C 0.005 3.995 8 C -0.105 4.105 9 H 0.112 0.888 10 C -0.147 4.147 11 C -0.147 4.147 12 C -0.109 4.109 13 H 0.081 0.919 14 C 0.030 3.970 15 N -0.403 5.403 16 C -0.366 4.366 17 H 0.072 0.928 18 C -0.258 4.258 19 N -0.636 5.636 20 Si 0.783 3.217 21 H -0.207 1.207 22 H -0.221 1.221 23 H -0.172 1.172 24 C -0.141 4.141 25 C -0.144 4.144 26 C 0.409 3.591 27 F -0.171 7.171 28 F -0.159 7.159 29 F -0.168 7.168 30 H 0.129 0.871 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.257 0.743 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.035 0.965 41 H 0.041 0.959 42 H 0.199 0.801 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.685 -16.238 27.149 31.980 hybrid contribution 0.813 1.003 0.134 1.298 sum -3.872 -15.235 27.282 31.487 Atomic orbital electron populations 1.21947 0.87074 1.04732 1.06932 1.22728 1.02916 1.03668 0.88371 0.81078 1.20166 0.80005 0.84178 0.85392 1.90816 1.39200 1.27724 1.87149 1.45771 1.53006 1.32373 1.04434 1.21425 0.99067 0.96180 0.82852 1.21330 1.01663 0.94519 0.92945 0.88785 1.21600 1.00368 0.95278 0.97407 1.21503 1.01270 0.97940 0.93999 1.21304 1.00067 0.95767 0.93731 0.91948 1.20886 0.95007 0.84927 0.96224 1.42748 1.49753 1.18725 1.29052 1.19061 1.18175 0.97566 1.01783 0.92849 1.25548 1.02753 0.97083 1.00439 1.69892 1.47845 1.11970 1.33921 0.85390 0.79171 0.76965 0.80146 1.20658 1.22144 1.17221 1.21446 1.00785 0.93571 0.98347 1.21464 1.01352 0.98847 0.92716 1.20239 0.75314 0.77658 0.85855 1.93190 1.30743 1.96392 1.96800 1.93195 1.88378 1.80559 1.53738 1.93175 1.88327 1.38479 1.96792 0.87131 0.91576 0.88503 0.74297 0.91291 0.92278 0.92433 0.90376 0.93942 0.91433 0.96519 0.95938 0.80052 0.93345 0.91810 0.91107 0.90156 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 8.85 71.98 0.64 0.00 16 2 C -0.15 -1.46 2.71 -11.54 -0.03 -1.49 16 3 H 0.17 0.53 8.14 -2.39 -0.02 0.51 16 4 C 0.52 7.98 6.92 87.66 0.61 8.58 16 5 O -0.57 -14.50 14.84 -3.02 -0.04 -14.54 16 6 N -0.70 -7.24 5.18 -463.06 -2.40 -9.64 16 7 C 0.13 1.66 5.06 86.38 0.44 2.09 16 8 C -0.09 -1.03 2.22 -10.79 -0.02 -1.05 16 9 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 10 C -0.11 -1.67 5.08 30.60 0.16 -1.52 16 11 C -0.11 -2.50 5.08 30.59 0.16 -2.34 16 12 C -0.09 -2.32 2.22 -10.80 -0.02 -2.35 16 13 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 14 C 0.16 5.69 5.65 86.38 0.49 6.17 16 15 N -0.76 -34.94 5.13 -343.46 -1.76 -36.71 16 16 C -0.23 -13.47 10.47 84.03 0.88 -12.59 16 17 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 18 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 19 N -0.99 -63.40 13.97 21.65 0.30 -63.10 16 20 Si 0.96 45.06 27.74 68.60 1.90 46.96 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 23 H -0.25 -10.33 6.52 99.48 0.65 -9.68 16 24 C -0.10 -1.97 5.21 30.61 0.16 -1.81 16 25 C -0.11 -1.50 5.21 30.61 0.16 -1.34 16 26 C 0.46 7.60 2.42 71.98 0.17 7.77 16 27 F -0.19 -4.06 16.40 44.97 0.74 -3.33 16 28 F -0.18 -2.57 16.80 44.97 0.76 -1.81 16 29 F -0.19 -3.85 15.88 44.97 0.71 -3.14 16 30 H 0.11 -0.06 7.56 -2.38 -0.02 -0.08 16 31 H 0.07 0.47 7.80 -2.39 -0.02 0.45 16 32 H 0.10 0.23 7.80 -2.39 -0.02 0.21 16 33 H 0.42 1.75 7.07 -92.71 -0.66 1.10 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 37 H 0.08 0.89 7.18 -2.39 -0.02 0.87 16 38 H 0.04 1.19 7.18 -2.39 -0.02 1.18 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.37 16.00 4.71 -92.71 -0.44 15.56 16 43 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 46 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -77.40 380.79 4.28 -73.12 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -0.17 Total: 15.55 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 4.24 Total: -3.37 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -3.86 Total: -109.45 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.04 Total: -14.54 kcal Atomic # 9 Polarization: -10.48 SS G_CDS: 2.21 Total: -8.28 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.96 kcal Total: -77.40 4.28 -73.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754834524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.087 kcal (2) G-P(sol) polarization free energy of solvation -77.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds