Wall clock time and date at job start Sat Apr 11 2020 04:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 O 1.21283 * 120.00262 * 120.00231 * 4 2 1 6 6 N 1.34777 * 119.99928 * 299.72137 * 4 2 1 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 2 8 8 C 1.52997 * 109.47555 * 180.02562 * 7 6 4 9 9 H 1.08992 * 109.47101 * 305.00652 * 8 7 6 10 10 C 1.53009 * 109.46870 * 65.00247 * 8 7 6 11 11 C 1.52997 * 109.46870 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47666 * 299.99909 * 11 10 8 13 13 H 1.09005 * 109.46761 * 300.00760 * 12 11 10 14 14 C 1.52990 * 109.47420 * 179.97438 * 12 11 10 15 15 N 1.46507 * 109.47034 * 65.00002 * 14 12 11 16 16 C 1.36937 * 119.99925 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99956 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99803 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00090 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00084 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47280 * 89.99520 * 20 18 16 22 22 H 1.48500 * 109.47157 * 209.99728 * 20 18 16 23 23 H 1.48501 * 109.47180 * 329.99761 * 20 18 16 24 24 C 1.53001 * 109.46979 * 59.99923 * 12 11 10 25 25 C 1.53002 * 109.47339 * 185.00128 * 8 7 6 26 26 C 1.52996 * 109.47068 * 239.99597 * 2 1 3 27 27 F 1.39907 * 109.47109 * 299.99756 * 26 2 1 28 28 F 1.39894 * 109.47338 * 60.00216 * 26 2 1 29 29 F 1.39898 * 109.46956 * 180.02562 * 26 2 1 30 30 H 1.09002 * 109.47575 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47551 * 300.00176 * 1 2 3 32 32 H 1.09003 * 109.47307 * 60.00755 * 1 2 3 33 33 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 34 34 H 1.08998 * 109.47134 * 300.00670 * 7 6 4 35 35 H 1.09002 * 109.46857 * 59.99862 * 7 6 4 36 36 H 1.09001 * 109.46850 * 299.99869 * 10 8 7 37 37 H 1.08992 * 109.46928 * 60.00299 * 10 8 7 38 38 H 1.09002 * 109.46716 * 179.97438 * 11 10 8 39 39 H 1.09006 * 109.47211 * 60.00422 * 11 10 8 40 40 H 1.08998 * 109.47124 * 184.99961 * 14 12 11 41 41 H 1.08998 * 109.47492 * 305.00583 * 14 12 11 42 42 H 0.97002 * 120.00047 * 0.02562 * 15 14 12 43 43 H 0.96994 * 119.99931 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.47387 * 180.02562 * 24 12 11 45 45 H 1.09000 * 109.47071 * 60.00181 * 24 12 11 46 46 H 1.09000 * 109.47257 * 300.00018 * 25 8 7 47 47 H 1.08997 * 109.46706 * 60.00439 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1194 6 7 1.7112 -0.2466 2.4546 7 6 2.2044 -0.9336 3.6508 8 6 1.6985 -0.2094 4.9000 9 1 1.9858 0.8409 4.8525 10 6 0.1740 -0.3184 4.9704 11 6 -0.3319 0.4052 6.2199 12 6 0.2832 -0.2365 7.4651 13 1 -0.0041 -1.2869 7.5121 14 6 -0.2221 0.4875 8.7145 15 7 -1.6668 0.2831 8.8466 16 6 -2.3440 0.8409 9.8981 17 1 -1.8131 1.4319 10.6297 18 6 -3.7127 0.6467 10.0235 19 7 -4.3598 -0.0731 9.1315 20 14 -4.6365 1.4082 11.4574 21 1 -5.1144 2.7615 11.0757 22 1 -5.7991 0.5531 11.8073 23 1 -3.7305 1.5155 12.6291 24 6 1.8077 -0.1276 7.3948 25 6 2.3137 -0.8506 6.1455 26 6 2.0399 -0.7213 -1.2492 27 9 1.5736 -2.0404 -1.2490 28 9 1.5737 -0.0619 -2.3915 29 9 3.4389 -0.7218 -1.2488 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 1.1535 0.5421 2.5436 34 1 1.8416 -1.9614 3.6551 35 1 3.2944 -0.9332 3.6465 36 1 -0.2643 0.1384 4.0830 37 1 -0.1134 -1.3687 5.0179 38 1 -1.4180 0.3279 6.2697 39 1 -0.0445 1.4557 6.1728 40 1 0.2831 0.0895 9.5945 41 1 -0.0127 1.5536 8.6264 42 1 -2.1436 -0.2480 8.1897 43 1 -5.3162 -0.2085 9.2190 44 1 2.2461 -0.5851 8.2817 45 1 2.0951 0.9228 7.3477 46 1 2.0263 -1.9010 6.1931 47 1 3.3997 -0.7729 6.0954 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754834525.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:20 Heat of formation + Delta-G solvation = -215.100842 kcal Electronic energy + Delta-G solvation = -29514.090864 eV Core-core repulsion = 24894.567350 eV Total energy + Delta-G solvation = -4619.523514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.40369 -47.92686 -47.80328 -40.40220 -38.89204 -35.74702 -34.70397 -34.06842 -32.01743 -30.67094 -30.00709 -26.94508 -26.87932 -24.56693 -23.43434 -22.87576 -21.93969 -20.88180 -20.36867 -19.61484 -19.07115 -18.77545 -18.03293 -17.16119 -17.02993 -16.15222 -15.78896 -15.12630 -14.95247 -14.72981 -14.65009 -14.39655 -14.26322 -14.15981 -14.02669 -13.95718 -13.89459 -13.73259 -13.67136 -13.22662 -13.13449 -12.99605 -12.79565 -12.45888 -12.23583 -12.05942 -11.91695 -11.60296 -11.44164 -11.01907 -10.93060 -10.84714 -10.77906 -10.37456 -10.21551 -10.14118 -9.98333 -9.79560 -9.56663 -9.45127 -8.86838 -6.90783 -5.77063 -3.04896 2.06450 2.15170 2.65743 3.29765 3.42453 3.47758 3.49441 3.61345 3.72278 4.22153 4.33333 4.44820 4.48889 4.58860 4.65098 4.72081 4.91722 5.04114 5.13018 5.26873 5.28734 5.42059 5.45186 5.51458 5.58019 5.58545 5.62008 5.67369 5.70051 5.94950 6.01596 6.08461 6.18045 6.23521 6.26430 6.31656 6.39807 6.53953 6.71330 6.86163 6.95873 6.96879 7.66757 7.69718 8.42605 9.53525 10.12819 10.47339 11.46018 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.001952 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.615215 B =14338.902409 C =15289.761588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.164 4.164 3 H 0.140 0.860 4 C 0.520 3.480 5 O -0.521 6.521 6 N -0.717 5.717 7 C 0.123 3.877 8 C -0.098 4.098 9 H 0.076 0.924 10 C -0.114 4.114 11 C -0.109 4.109 12 C -0.094 4.094 13 H 0.069 0.931 14 C 0.157 3.843 15 N -0.732 5.732 16 C -0.237 4.237 17 H 0.069 0.931 18 C -0.016 4.016 19 N -0.935 5.935 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.110 4.110 25 C -0.108 4.108 26 C 0.473 3.527 27 F -0.171 7.171 28 F -0.181 7.181 29 F -0.174 7.174 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.404 0.596 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.016 0.984 41 H 0.017 0.983 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.580 1.412 -20.619 25.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 H 0.157 0.843 4 C 0.304 3.696 5 O -0.396 6.396 6 N -0.369 5.369 7 C 0.000 4.000 8 C -0.117 4.117 9 H 0.095 0.905 10 C -0.151 4.151 11 C -0.147 4.147 12 C -0.113 4.113 13 H 0.087 0.913 14 C 0.029 3.971 15 N -0.376 5.376 16 C -0.369 4.369 17 H 0.087 0.913 18 C -0.211 4.211 19 N -0.584 5.584 20 Si 0.738 3.262 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.148 4.148 25 C -0.146 4.146 26 C 0.418 3.582 27 F -0.152 7.152 28 F -0.163 7.163 29 F -0.155 7.155 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.239 0.761 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.070 0.750 -20.549 25.494 hybrid contribution -0.952 0.610 0.435 1.212 sum 14.117 1.360 -20.114 24.611 Atomic orbital electron populations 1.21875 0.88967 1.05042 1.05123 1.22653 1.01598 1.03031 0.91378 0.84253 1.19727 0.80813 0.84764 0.84325 1.90830 1.36960 1.25415 1.86433 1.45888 1.53505 1.32232 1.05257 1.21568 0.99145 0.96692 0.82606 1.21448 0.96700 1.00137 0.93410 0.90515 1.21641 0.93591 1.01480 0.98415 1.21518 1.01444 0.98813 0.92893 1.21319 0.93869 1.00441 0.95630 0.91276 1.20688 0.86409 0.96344 0.93665 1.42391 1.02029 1.62601 1.30620 1.19244 0.90541 1.24929 1.02150 0.91289 1.24731 0.96596 1.00902 0.98906 1.69656 1.08238 1.44061 1.36423 0.86197 0.79547 0.78461 0.82044 1.21771 1.21792 1.20808 1.21497 0.95905 1.00403 0.96962 1.21466 0.99441 1.00061 0.93665 1.19748 0.75939 0.77948 0.84534 1.93218 1.88264 1.37098 1.96651 1.93188 1.88557 1.80839 1.53691 1.93220 1.29282 1.96357 1.96663 0.90333 0.89496 0.89748 0.76078 0.90967 0.91206 0.92602 0.91715 0.90693 0.92399 0.96581 0.96543 0.78267 0.93564 0.91850 0.92068 0.91616 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 8.85 37.16 0.33 -0.40 16 2 C -0.16 -1.07 2.71 -91.77 -0.25 -1.32 16 3 H 0.14 0.50 8.14 -51.93 -0.42 0.08 16 4 C 0.52 4.85 6.92 -10.98 -0.08 4.77 16 5 O -0.52 -7.08 14.83 5.55 0.08 -7.00 16 6 N -0.72 -5.32 5.18 -60.29 -0.31 -5.63 16 7 C 0.12 1.05 5.06 -4.04 -0.02 1.03 16 8 C -0.10 -0.85 2.23 -90.62 -0.20 -1.05 16 9 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 10 C -0.11 -1.17 5.08 -26.73 -0.14 -1.31 16 11 C -0.11 -1.51 5.07 -26.73 -0.14 -1.64 16 12 C -0.09 -1.40 2.23 -90.63 -0.20 -1.60 16 13 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 14 C 0.16 3.06 5.65 -4.04 -0.02 3.04 16 15 N -0.73 -18.23 5.33 -59.91 -0.32 -18.55 16 16 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 20 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C -0.11 -1.28 5.20 -26.76 -0.14 -1.42 16 25 C -0.11 -1.03 5.20 -26.76 -0.14 -1.17 16 26 C 0.47 4.34 2.42 37.16 0.09 4.43 16 27 F -0.17 -1.91 15.88 2.25 0.04 -1.88 16 28 F -0.18 -1.52 16.80 2.25 0.04 -1.48 16 29 F -0.17 -1.91 16.40 2.25 0.04 -1.88 16 30 H 0.08 0.47 7.80 -51.93 -0.41 0.07 16 31 H 0.09 0.28 7.57 -51.93 -0.39 -0.11 16 32 H 0.08 0.32 7.80 -51.93 -0.41 -0.09 16 33 H 0.40 2.03 7.08 -40.82 -0.29 1.74 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.49 7.18 -51.93 -0.37 0.11 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.26 7.18 -51.93 -0.37 0.89 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.38 9.96 6.85 -40.82 -0.28 9.68 16 43 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -33.19 383.92 -7.66 -40.85 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.56 Total: 3.75 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -1.15 Total: -3.94 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.09 Total: -51.49 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: 0.08 Total: -7.00 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.11 Total: -5.23 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.19 -7.66 -40.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754834525.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.249 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds