Wall clock time and date at job start Sat Apr 11 2020 04:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 O 1.21283 * 120.00262 * 120.00231 * 4 2 1 6 6 N 1.34777 * 119.99928 * 299.72137 * 4 2 1 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 2 8 8 C 1.52997 * 109.47555 * 180.02562 * 7 6 4 9 9 H 1.08992 * 109.47101 * 305.00652 * 8 7 6 10 10 C 1.53009 * 109.46870 * 65.00247 * 8 7 6 11 11 C 1.52997 * 109.46870 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47666 * 299.99909 * 11 10 8 13 13 H 1.09005 * 109.46761 * 300.00760 * 12 11 10 14 14 C 1.52990 * 109.47420 * 179.97438 * 12 11 10 15 15 N 1.46507 * 109.47034 * 65.00002 * 14 12 11 16 16 C 1.36937 * 119.99925 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99956 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99803 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00090 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00084 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47280 * 89.99520 * 20 18 16 22 22 H 1.48500 * 109.47157 * 209.99728 * 20 18 16 23 23 H 1.48501 * 109.47180 * 329.99761 * 20 18 16 24 24 C 1.53001 * 109.46979 * 59.99923 * 12 11 10 25 25 C 1.53002 * 109.47339 * 185.00128 * 8 7 6 26 26 C 1.52996 * 109.47068 * 239.99597 * 2 1 3 27 27 F 1.39907 * 109.47109 * 299.99756 * 26 2 1 28 28 F 1.39894 * 109.47338 * 60.00216 * 26 2 1 29 29 F 1.39898 * 109.46956 * 180.02562 * 26 2 1 30 30 H 1.09002 * 109.47575 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47551 * 300.00176 * 1 2 3 32 32 H 1.09003 * 109.47307 * 60.00755 * 1 2 3 33 33 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 34 34 H 1.08998 * 109.47134 * 300.00670 * 7 6 4 35 35 H 1.09002 * 109.46857 * 59.99862 * 7 6 4 36 36 H 1.09001 * 109.46850 * 299.99869 * 10 8 7 37 37 H 1.08992 * 109.46928 * 60.00299 * 10 8 7 38 38 H 1.09002 * 109.46716 * 179.97438 * 11 10 8 39 39 H 1.09006 * 109.47211 * 60.00422 * 11 10 8 40 40 H 1.08998 * 109.47124 * 184.99961 * 14 12 11 41 41 H 1.08998 * 109.47492 * 305.00583 * 14 12 11 42 42 H 0.97002 * 120.00047 * 0.02562 * 15 14 12 43 43 H 0.96994 * 119.99931 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.47387 * 180.02562 * 24 12 11 45 45 H 1.09000 * 109.47071 * 60.00181 * 24 12 11 46 46 H 1.09000 * 109.47257 * 300.00018 * 25 8 7 47 47 H 1.08997 * 109.46706 * 60.00439 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1194 6 7 1.7112 -0.2466 2.4546 7 6 2.2044 -0.9336 3.6508 8 6 1.6985 -0.2094 4.9000 9 1 1.9858 0.8409 4.8525 10 6 0.1740 -0.3184 4.9704 11 6 -0.3319 0.4052 6.2199 12 6 0.2832 -0.2365 7.4651 13 1 -0.0041 -1.2869 7.5121 14 6 -0.2221 0.4875 8.7145 15 7 -1.6668 0.2831 8.8466 16 6 -2.3440 0.8409 9.8981 17 1 -1.8131 1.4319 10.6297 18 6 -3.7127 0.6467 10.0235 19 7 -4.3598 -0.0731 9.1315 20 14 -4.6365 1.4082 11.4574 21 1 -5.1144 2.7615 11.0757 22 1 -5.7991 0.5531 11.8073 23 1 -3.7305 1.5155 12.6291 24 6 1.8077 -0.1276 7.3948 25 6 2.3137 -0.8506 6.1455 26 6 2.0399 -0.7213 -1.2492 27 9 1.5736 -2.0404 -1.2490 28 9 1.5737 -0.0619 -2.3915 29 9 3.4389 -0.7218 -1.2488 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 1.1535 0.5421 2.5436 34 1 1.8416 -1.9614 3.6551 35 1 3.2944 -0.9332 3.6465 36 1 -0.2643 0.1384 4.0830 37 1 -0.1134 -1.3687 5.0179 38 1 -1.4180 0.3279 6.2697 39 1 -0.0445 1.4557 6.1728 40 1 0.2831 0.0895 9.5945 41 1 -0.0127 1.5536 8.6264 42 1 -2.1436 -0.2480 8.1897 43 1 -5.3162 -0.2085 9.2190 44 1 2.2461 -0.5851 8.2817 45 1 2.0951 0.9228 7.3477 46 1 2.0263 -1.9010 6.1931 47 1 3.3997 -0.7729 6.0954 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754834525.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:19 Heat of formation + Delta-G solvation = -235.965632 kcal Electronic energy + Delta-G solvation = -29514.995629 eV Core-core repulsion = 24894.567350 eV Total energy + Delta-G solvation = -4620.428280 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.12848 -48.63189 -48.58586 -41.13952 -39.87389 -36.98180 -35.69365 -35.08452 -33.52402 -31.63510 -31.52500 -28.14848 -27.43109 -25.98344 -24.50565 -23.98941 -23.09081 -21.63314 -21.40662 -20.63392 -19.77612 -19.49363 -19.13509 -18.70874 -17.75527 -16.89909 -16.66689 -16.50221 -16.04988 -15.77079 -15.51355 -15.41572 -15.25508 -15.08505 -15.01521 -14.89378 -14.77263 -14.70962 -14.55879 -14.48621 -14.19988 -13.91004 -13.50038 -13.40725 -13.12458 -12.98638 -12.95589 -12.84569 -12.59022 -12.46532 -12.38636 -12.08935 -11.92003 -11.86085 -11.74381 -11.29082 -11.18208 -10.96999 -10.87200 -10.77899 -10.16366 -8.97203 -7.94691 -5.22654 1.38751 1.47137 1.48690 1.51972 1.57209 2.02068 2.56494 2.65523 2.99469 3.10523 3.38661 3.63522 3.67580 3.79581 3.81866 3.86346 3.99150 4.01213 4.24243 4.35077 4.44579 4.58319 4.61426 4.62194 4.65561 4.67194 4.69713 4.80289 4.87413 4.97105 5.06661 5.11542 5.12810 5.23908 5.27096 5.29711 5.35830 5.38363 5.47310 5.50571 5.63429 5.70220 6.28422 6.35840 7.04468 7.34430 8.12540 8.35528 9.28966 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.001952 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.615215 B =14338.902409 C =15289.761588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.153 4.153 3 H 0.176 0.824 4 C 0.517 3.483 5 O -0.570 6.570 6 N -0.704 5.704 7 C 0.128 3.872 8 C -0.085 4.085 9 H 0.095 0.905 10 C -0.107 4.107 11 C -0.103 4.103 12 C -0.086 4.086 13 H 0.052 0.948 14 C 0.153 3.847 15 N -0.744 5.744 16 C -0.245 4.245 17 H 0.073 0.927 18 C -0.077 4.077 19 N -0.970 5.970 20 Si 0.973 3.027 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.271 1.271 24 C -0.102 4.102 25 C -0.106 4.106 26 C 0.464 3.536 27 F -0.188 7.188 28 F -0.177 7.177 29 F -0.188 7.188 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.419 0.581 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.037 0.963 39 H 0.064 0.936 40 H 0.012 0.988 41 H 0.019 0.981 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.483 3.201 -20.904 26.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.175 4.175 3 H 0.193 0.807 4 C 0.302 3.698 5 O -0.449 6.449 6 N -0.356 5.356 7 C 0.005 3.995 8 C -0.103 4.103 9 H 0.113 0.887 10 C -0.144 4.144 11 C -0.141 4.141 12 C -0.105 4.105 13 H 0.071 0.929 14 C 0.027 3.973 15 N -0.387 5.387 16 C -0.377 4.377 17 H 0.091 0.909 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.802 3.198 21 H -0.212 1.212 22 H -0.222 1.222 23 H -0.196 1.196 24 C -0.140 4.140 25 C -0.144 4.144 26 C 0.410 3.590 27 F -0.169 7.169 28 F -0.158 7.158 29 F -0.169 7.169 30 H 0.081 0.919 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.257 0.743 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.030 0.970 41 H 0.037 0.963 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.994 2.581 -20.819 26.380 hybrid contribution -1.194 0.056 0.531 1.307 sum 14.800 2.637 -20.288 25.251 Atomic orbital electron populations 1.21951 0.87475 1.04595 1.06907 1.22711 1.02562 1.03838 0.88367 0.80658 1.20179 0.80021 0.84188 0.85384 1.90814 1.39278 1.27632 1.87148 1.45775 1.53030 1.32324 1.04470 1.21421 0.99162 0.96071 0.82843 1.21324 0.94963 1.01061 0.92999 0.88725 1.21573 0.95057 1.00416 0.97386 1.21417 0.99048 0.99616 0.94038 1.21238 0.96466 0.98762 0.94038 0.92934 1.20895 0.83632 0.96972 0.95827 1.42612 1.04131 1.62207 1.29745 1.19649 0.91077 1.24313 1.02659 0.90895 1.25557 0.97600 1.02020 1.01703 1.69813 1.08149 1.45775 1.38327 0.85150 0.77996 0.77430 0.79253 1.21243 1.22217 1.19586 1.21434 0.92836 1.01478 0.98282 1.21450 1.00698 0.99447 0.92798 1.20220 0.75364 0.77610 0.85824 1.93181 1.88376 1.38586 1.96793 1.93193 1.88385 1.80542 1.53696 1.93188 1.30564 1.96388 1.96795 0.91918 0.87357 0.88335 0.74325 0.92412 0.91097 0.90454 0.92892 0.94449 0.91690 0.97021 0.96256 0.79362 0.94019 0.91845 0.90985 0.92219 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.85 71.98 0.64 -0.43 16 2 C -0.15 -1.64 2.71 -11.54 -0.03 -1.67 16 3 H 0.18 0.59 8.14 -2.39 -0.02 0.57 16 4 C 0.52 8.76 6.92 87.66 0.61 9.37 16 5 O -0.57 -15.27 14.83 -3.04 -0.05 -15.32 16 6 N -0.70 -8.58 5.18 -463.06 -2.40 -10.98 16 7 C 0.13 1.92 5.06 86.38 0.44 2.36 16 8 C -0.08 -1.22 2.23 -10.79 -0.02 -1.24 16 9 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 10 C -0.11 -2.01 5.08 30.60 0.16 -1.85 16 11 C -0.10 -2.78 5.07 30.59 0.16 -2.63 16 12 C -0.09 -2.54 2.23 -10.80 -0.02 -2.57 16 13 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 14 C 0.15 5.99 5.65 86.37 0.49 6.48 16 15 N -0.74 -37.71 5.33 -343.46 -1.83 -39.55 16 16 C -0.25 -13.74 9.99 84.03 0.84 -12.90 16 17 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 18 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 19 N -0.97 -59.22 13.06 21.65 0.28 -58.93 16 20 Si 0.97 45.98 29.55 68.60 2.03 48.01 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 C -0.10 -2.18 5.20 30.58 0.16 -2.02 16 25 C -0.11 -1.75 5.20 30.58 0.16 -1.59 16 26 C 0.46 8.08 2.42 71.98 0.17 8.26 16 27 F -0.19 -4.23 15.88 44.97 0.71 -3.52 16 28 F -0.18 -2.71 16.80 44.97 0.76 -1.96 16 29 F -0.19 -4.06 16.40 44.97 0.74 -3.32 16 30 H 0.06 0.67 7.80 -2.39 -0.02 0.65 16 31 H 0.11 0.31 7.57 -2.39 -0.02 0.29 16 32 H 0.10 0.46 7.80 -2.39 -0.02 0.44 16 33 H 0.42 2.61 7.08 -92.71 -0.66 1.95 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.13 7.18 -2.39 -0.02 1.11 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.04 1.28 7.18 -2.39 -0.02 1.27 16 39 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.37 20.10 6.85 -92.71 -0.64 19.46 16 43 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 44 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -73.88 383.92 4.13 -69.75 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -0.31 Total: 20.19 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 4.20 Total: -4.38 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -3.95 Total: -109.45 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.05 Total: -15.32 kcal Atomic # 9 Polarization: -11.00 SS G_CDS: 2.21 Total: -8.79 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -73.88 4.13 -69.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754834525.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.220 kcal (2) G-P(sol) polarization free energy of solvation -73.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds