Wall clock time and date at job start Sat Apr 11 2020 04:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47153 * 2 1 4 4 C 1.52999 * 109.46715 * 240.00678 * 2 1 3 5 5 C 1.50696 * 109.47438 * 64.99860 * 4 2 1 6 6 O 1.21277 * 119.99798 * 0.02562 * 5 4 2 7 7 N 1.34781 * 120.00062 * 180.02562 * 5 4 2 8 8 C 1.46498 * 119.99947 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.46437 * 34.96486 * 8 7 5 10 10 C 1.53041 * 109.45566 * 274.99409 * 8 7 5 11 11 C 1.53193 * 109.31191 * 178.62660 * 10 8 7 12 12 N 1.46930 * 108.77179 * 54.63872 * 11 10 8 13 13 C 1.36941 * 120.62640 * 126.36927 * 12 11 10 14 14 H 1.08005 * 119.99181 * 209.19561 * 13 12 11 15 15 C 1.38809 * 120.00509 * 29.19812 * 13 12 11 16 16 N 1.31621 * 119.99821 * 24.23101 * 15 13 12 17 17 Si 1.86798 * 120.00043 * 204.23325 * 15 13 12 18 18 H 1.48499 * 109.46860 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.47186 * 299.99863 * 17 15 13 20 20 H 1.48496 * 109.47080 * 60.00024 * 17 15 13 21 21 C 1.46922 * 118.73825 * 306.63793 * 12 11 10 22 22 C 1.52769 * 109.00500 * 53.31449 * 21 12 11 23 23 C 1.52996 * 109.56050 * 185.54974 * 22 21 12 24 24 C 1.53002 * 109.36051 * 65.49764 * 22 21 12 25 25 C 1.52995 * 109.47484 * 120.00625 * 2 1 3 26 26 F 1.39900 * 109.47508 * 179.97438 * 25 2 1 27 27 F 1.39903 * 109.47060 * 299.99663 * 25 2 1 28 28 F 1.39902 * 109.47323 * 59.99578 * 25 2 1 29 29 H 1.09000 * 109.47433 * 59.99392 * 1 2 3 30 30 H 1.08999 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46586 * 299.99750 * 1 2 3 32 32 H 1.09001 * 109.47126 * 304.99828 * 4 2 1 33 33 H 1.09006 * 109.46948 * 184.99982 * 4 2 1 34 34 H 0.97004 * 120.00068 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.49644 * 58.68248 * 10 8 7 36 36 H 1.09000 * 109.52690 * 298.59924 * 10 8 7 37 37 H 1.08996 * 109.58812 * 294.84844 * 11 10 8 38 38 H 1.09006 * 109.58730 * 174.42174 * 11 10 8 39 39 H 0.97004 * 120.00227 * 5.77752 * 16 15 13 40 40 H 1.09004 * 109.58378 * 173.14583 * 21 12 11 41 41 H 1.08997 * 109.58900 * 293.57409 * 21 12 11 42 42 H 1.09004 * 109.46711 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.47116 * 299.96085 * 23 22 21 44 44 H 1.08994 * 109.47561 * 59.96425 * 23 22 21 45 45 H 1.09002 * 109.47191 * 300.15895 * 24 22 21 46 46 H 1.09000 * 109.47203 * 60.15469 * 24 22 21 47 47 H 1.08991 * 109.47026 * 180.15878 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6412 0.0572 -2.4766 6 8 1.0116 1.0876 -2.3631 7 7 1.9842 -0.3917 -3.7003 8 6 1.5971 0.3653 -4.8933 9 1 1.6286 1.4322 -4.6725 10 6 0.1774 -0.0278 -5.3080 11 6 -0.2369 0.7904 -6.5351 12 7 0.7717 0.6076 -7.5878 13 6 0.4046 0.1993 -8.8423 14 1 1.0937 -0.3709 -9.4477 15 6 -0.8529 0.5183 -9.3358 16 7 -1.5001 1.5622 -8.8628 17 14 -1.6267 -0.5340 -10.6713 18 1 -2.9618 0.0137 -11.0216 19 1 -0.7564 -0.5257 -11.8745 20 1 -1.7773 -1.9268 -10.1789 21 6 2.1822 0.8653 -7.2671 22 6 2.5686 0.0516 -6.0333 23 6 3.9921 0.4144 -5.6056 24 6 2.4996 -1.4399 -6.3673 25 6 2.0401 -0.7213 1.2491 26 9 3.4391 -0.7219 1.2488 27 9 1.5738 -0.0619 2.3915 28 9 1.5737 -2.0404 1.2491 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6052 -1.7197 -1.2953 33 1 3.1262 -0.7994 -1.2057 34 1 2.4881 -1.2156 -3.7910 35 1 -0.5105 0.1742 -4.4870 36 1 0.1501 -1.0896 -5.5525 37 1 -0.2985 1.8451 -6.2672 38 1 -1.2065 0.4452 -6.8941 39 1 -1.0660 2.1567 -8.2311 40 1 2.8082 0.5695 -8.1090 41 1 2.3219 1.9263 -7.0602 42 1 4.2661 -0.1666 -4.7250 43 1 4.6837 0.1908 -6.4179 44 1 4.0407 1.4773 -5.3693 45 1 1.4855 -1.6972 -6.6733 46 1 3.1916 -1.6629 -7.1794 47 1 2.7723 -2.0223 -5.4873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755142589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:23 Heat of formation + Delta-G solvation = -207.958797 kcal Electronic energy + Delta-G solvation = -31067.486986 eV Core-core repulsion = 26448.273174 eV Total energy + Delta-G solvation = -4619.213812 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.12232 -48.61080 -48.57679 -41.51705 -39.88594 -36.74053 -35.95883 -34.61638 -33.21673 -31.74168 -29.22132 -28.18610 -27.39401 -27.26104 -26.50062 -24.15091 -22.54177 -22.39987 -21.29038 -19.85659 -19.49978 -19.41814 -19.21296 -18.60655 -17.48552 -17.15041 -16.62313 -16.12781 -15.95133 -15.77356 -15.55010 -15.46556 -15.30738 -15.27131 -15.02706 -14.92459 -14.76281 -14.71671 -14.50195 -14.36076 -14.03002 -13.90019 -13.56131 -13.30424 -12.90819 -12.76903 -12.68093 -12.54294 -12.44644 -12.39720 -12.36649 -12.28546 -12.25722 -11.92718 -11.77010 -11.59450 -11.41849 -11.16758 -10.81738 -10.44756 -9.99998 -8.91230 -8.22221 -5.39596 1.59124 1.60907 1.66252 1.67218 1.84813 2.16906 2.66869 2.80890 3.00662 3.05545 3.23529 3.51117 3.59249 3.64021 3.82933 3.88985 3.93934 3.99926 4.22567 4.28206 4.35249 4.51090 4.51487 4.53525 4.57773 4.73579 4.75620 4.80481 4.86211 4.91476 4.92561 4.96315 5.05598 5.13714 5.15992 5.22742 5.24879 5.31012 5.38284 5.54518 5.64274 5.87160 6.39735 6.57333 7.06245 7.27200 7.78593 8.24344 9.02396 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.021853 B = 0.002665 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.972642 B =10504.669899 C =11052.388749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.114 4.114 3 H 0.119 0.881 4 C -0.136 4.136 5 C 0.515 3.485 6 O -0.574 6.574 7 N -0.706 5.706 8 C 0.178 3.822 9 H 0.056 0.944 10 C -0.129 4.129 11 C 0.163 3.837 12 N -0.609 5.609 13 C -0.346 4.346 14 H 0.055 0.945 15 C -0.078 4.078 16 N -0.946 5.946 17 Si 1.114 2.886 18 H -0.297 1.297 19 H -0.275 1.275 20 H -0.278 1.278 21 C 0.157 3.843 22 C -0.079 4.079 23 C -0.129 4.129 24 C -0.125 4.125 25 C 0.460 3.540 26 F -0.184 7.184 27 F -0.188 7.188 28 F -0.182 7.182 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.414 0.586 35 H 0.051 0.949 36 H 0.069 0.931 37 H -0.007 1.007 38 H 0.043 0.957 39 H 0.252 0.748 40 H 0.057 0.943 41 H 0.004 0.996 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.042 0.958 46 H 0.054 0.946 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.834 -9.102 19.213 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.134 4.134 3 H 0.137 0.863 4 C -0.176 4.176 5 C 0.303 3.697 6 O -0.454 6.454 7 N -0.358 5.358 8 C 0.073 3.927 9 H 0.074 0.926 10 C -0.169 4.169 11 C 0.037 3.963 12 N -0.332 5.332 13 C -0.476 4.476 14 H 0.073 0.927 15 C -0.274 4.274 16 N -0.588 5.588 17 Si 0.938 3.062 18 H -0.223 1.223 19 H -0.201 1.201 20 H -0.204 1.204 21 C 0.031 3.969 22 C -0.081 4.081 23 C -0.187 4.187 24 C -0.182 4.182 25 C 0.406 3.594 26 F -0.166 7.166 27 F -0.169 7.169 28 F -0.164 7.164 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.252 0.748 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.011 0.989 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.022 0.978 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.064 -8.632 18.387 22.669 hybrid contribution 1.250 0.468 0.797 1.555 sum 11.315 -8.165 19.184 23.722 Atomic orbital electron populations 1.21955 0.91409 1.03734 1.04381 1.22105 0.99943 1.01666 0.89707 0.86314 1.21736 1.05526 1.00838 0.89463 1.20776 0.78522 0.85232 0.85165 1.90708 1.41306 1.26384 1.87021 1.46009 1.57171 1.27927 1.04733 1.20520 0.93022 0.95080 0.84126 0.92571 1.22273 0.96878 1.00819 0.96925 1.20664 0.93005 0.94626 0.88040 1.44257 1.02099 1.79406 1.07484 1.20179 1.03268 1.30444 0.93710 0.92748 1.27185 0.97698 0.98575 1.03961 1.70904 1.42067 1.12528 1.33335 0.82873 0.75176 0.74424 0.73695 1.22294 1.20099 1.20400 1.20992 0.85244 0.95071 0.95603 1.21107 0.95408 0.97583 0.94004 1.21751 0.93678 1.01196 1.02092 1.21724 1.01758 0.93392 1.01371 1.20559 0.75245 0.77565 0.86027 1.93182 1.30153 1.96427 1.96798 1.93173 1.88551 1.80901 1.54283 1.93176 1.88447 1.37957 1.96813 0.90499 0.90853 0.91081 0.85449 0.85111 0.74812 0.93048 0.91244 0.98921 0.93802 0.93821 0.92468 0.97815 0.90378 0.91557 0.93615 0.93859 0.92657 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 8.69 71.98 0.63 -2.17 16 2 C -0.11 -1.79 2.01 -10.80 -0.02 -1.82 16 3 H 0.12 2.00 7.95 -2.39 -0.02 1.98 16 4 C -0.14 -1.82 4.93 29.85 0.15 -1.67 16 5 C 0.52 11.40 7.51 87.65 0.66 12.05 16 6 O -0.57 -17.83 13.63 -3.02 -0.04 -17.87 16 7 N -0.71 -15.11 4.29 -442.42 -1.90 -17.01 16 8 C 0.18 5.44 1.57 45.02 0.07 5.52 16 9 H 0.06 2.05 7.58 -2.39 -0.02 2.03 16 10 C -0.13 -4.79 5.31 30.67 0.16 -4.62 16 11 C 0.16 7.84 4.70 86.36 0.41 8.25 16 12 N -0.61 -29.63 2.28 -699.90 -1.60 -31.23 16 13 C -0.35 -18.84 9.48 84.03 0.80 -18.04 16 14 H 0.05 2.92 7.94 -2.91 -0.02 2.90 16 15 C -0.08 -4.41 4.69 84.86 0.40 -4.02 16 16 N -0.95 -58.31 12.45 21.65 0.27 -58.04 16 17 Si 1.11 50.49 29.98 68.60 2.06 52.54 16 18 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 19 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 21 C 0.16 6.22 5.15 86.22 0.44 6.67 16 22 C -0.08 -2.29 0.56 -52.25 -0.03 -2.32 16 23 C -0.13 -2.84 8.31 71.98 0.60 -2.24 16 24 C -0.13 -3.32 7.82 71.98 0.56 -2.76 16 25 C 0.46 7.15 2.69 71.98 0.19 7.34 16 26 F -0.18 -2.89 16.71 44.97 0.75 -2.14 16 27 F -0.19 -3.37 16.80 44.97 0.76 -2.61 16 28 F -0.18 -2.89 16.37 44.97 0.74 -2.15 16 29 H 0.08 1.79 5.95 -2.39 -0.01 1.78 16 30 H 0.07 1.14 7.80 -2.39 -0.02 1.12 16 31 H 0.07 1.18 7.80 -2.38 -0.02 1.16 16 32 H 0.13 1.24 7.94 -2.39 -0.02 1.22 16 33 H 0.13 1.13 7.66 -2.38 -0.02 1.11 16 34 H 0.41 6.11 6.66 -92.71 -0.62 5.49 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 2.51 6.34 -2.39 -0.02 2.49 16 37 H -0.01 -0.37 7.85 -2.39 -0.02 -0.39 16 38 H 0.04 2.40 6.39 -2.38 -0.02 2.38 16 39 H 0.25 15.97 6.71 -92.71 -0.62 15.35 16 40 H 0.06 2.26 7.93 -2.38 -0.02 2.24 16 41 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 42 H 0.08 1.28 7.36 -2.38 -0.02 1.27 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.04 1.45 5.97 -2.39 -0.01 1.44 16 46 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.07 1.38 6.58 -2.39 -0.02 1.37 16 Total: -1.00 -69.21 370.40 6.57 -62.64 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.52 Total: 15.68 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 5.01 Total: 0.17 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -3.22 Total: -106.27 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.04 Total: -17.87 kcal Atomic # 9 Polarization: -9.14 SS G_CDS: 2.24 Total: -6.90 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.06 Total: 52.54 kcal Total: -69.21 6.57 -62.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755142589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.316 kcal (2) G-P(sol) polarization free energy of solvation -69.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds