Wall clock time and date at job start Sat Apr 11 2020 04:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47005 * 2 1 4 4 C 1.52996 * 109.47426 * 239.99830 * 2 1 3 5 5 C 1.50699 * 109.47497 * 64.99804 * 4 2 1 6 6 O 1.21285 * 119.99733 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00270 * 180.02562 * 5 4 2 8 8 C 1.46498 * 119.99818 * 179.72949 * 7 5 4 9 9 H 1.08995 * 109.45932 * 324.96382 * 8 7 5 10 10 C 1.53034 * 109.46280 * 84.93147 * 8 7 5 11 11 C 1.53195 * 109.31210 * 181.38686 * 10 8 7 12 12 N 1.46925 * 108.77296 * 305.35885 * 11 10 8 13 13 C 1.36931 * 120.63455 * 233.58867 * 12 11 10 14 14 H 1.08006 * 119.99874 * 27.69443 * 13 12 11 15 15 C 1.38818 * 120.00354 * 207.69363 * 13 12 11 16 16 N 1.31619 * 119.99708 * 17.36714 * 15 13 12 17 17 Si 1.86802 * 120.00075 * 197.36267 * 15 13 12 18 18 H 1.48504 * 109.47255 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46833 * 119.99846 * 17 15 13 20 20 H 1.48494 * 109.47080 * 240.00128 * 17 15 13 21 21 C 1.46926 * 118.73696 * 53.60996 * 12 11 10 22 22 C 1.53044 * 109.45422 * 204.99880 * 8 7 5 23 23 C 1.53006 * 109.49779 * 298.55971 * 22 8 7 24 24 C 1.53001 * 109.50060 * 58.66047 * 22 8 7 25 25 C 1.52996 * 109.46860 * 119.99303 * 2 1 3 26 26 F 1.39902 * 109.47036 * 180.02562 * 25 2 1 27 27 F 1.39897 * 109.47636 * 300.00036 * 25 2 1 28 28 F 1.39905 * 109.47210 * 60.00742 * 25 2 1 29 29 H 1.09001 * 109.47005 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47451 * 300.00364 * 1 2 3 31 31 H 1.09001 * 109.46624 * 60.00841 * 1 2 3 32 32 H 1.09009 * 109.46786 * 304.99795 * 4 2 1 33 33 H 1.08997 * 109.47236 * 185.00293 * 4 2 1 34 34 H 0.97003 * 119.99352 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.49419 * 301.33066 * 10 8 7 36 36 H 1.08996 * 109.50363 * 61.42980 * 10 8 7 37 37 H 1.08998 * 109.58421 * 185.57492 * 11 10 8 38 38 H 1.08996 * 109.59305 * 65.14602 * 11 10 8 39 39 H 0.96993 * 119.99544 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.58935 * 186.60443 * 21 12 11 41 41 H 1.09004 * 109.70638 * 66.25382 * 21 12 11 42 42 H 1.08999 * 109.46422 * 60.00303 * 23 22 8 43 43 H 1.08998 * 109.46927 * 180.02562 * 23 22 8 44 44 H 1.09003 * 109.47032 * 300.00635 * 23 22 8 45 45 H 1.08996 * 109.46917 * 60.00268 * 24 22 8 46 46 H 1.08999 * 109.46942 * 180.02562 * 24 22 8 47 47 H 1.08997 * 109.46743 * 299.99547 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6415 0.0569 -2.4766 6 8 1.0118 1.0873 -2.3633 7 7 1.9846 -0.3921 -3.7001 8 6 1.5920 0.3613 -4.8936 9 1 0.6140 0.8145 -4.7314 10 6 2.6233 1.4585 -5.1662 11 6 2.1914 2.2661 -6.3942 12 7 1.9817 1.3426 -7.5176 13 6 2.6160 1.5442 -8.7143 14 1 3.5651 2.0589 -8.7424 15 6 2.0392 1.0870 -9.8913 16 7 0.7608 0.7754 -9.9199 17 14 3.0775 0.9141 -11.4345 18 1 4.4738 1.3253 -11.1403 19 1 3.0632 -0.5010 -11.8847 20 1 2.5211 1.7798 -12.5050 21 6 1.0780 0.1990 -7.3326 22 6 1.5224 -0.5854 -6.0941 23 6 2.9031 -1.1953 -6.3441 24 6 0.5150 -1.7007 -5.8073 25 6 2.0400 -0.7211 1.2493 26 9 3.4390 -0.7206 1.2496 27 9 1.5737 -0.0615 2.3915 28 9 1.5737 -2.0402 1.2494 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8901 32 1 1.6055 -1.7199 -1.2950 33 1 3.1264 -0.7995 -1.2055 34 1 2.4886 -1.2160 -3.7906 35 1 2.6892 2.1188 -4.3014 36 1 3.5966 1.0048 -5.3530 37 1 2.9701 2.9840 -6.6518 38 1 1.2627 2.7936 -6.1767 39 1 0.3579 0.4556 -10.7422 40 1 1.1221 -0.4471 -8.2095 41 1 0.0576 0.5557 -7.1926 42 1 3.2201 -1.7508 -5.4615 43 1 2.8532 -1.8691 -7.1994 44 1 3.6198 -0.4002 -6.5497 45 1 -0.4685 -1.2653 -5.6308 46 1 0.4662 -2.3749 -6.6623 47 1 0.8301 -2.2566 -4.9243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755142591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:27 Heat of formation + Delta-G solvation = -188.177514 kcal Electronic energy + Delta-G solvation = -31039.283180 eV Core-core repulsion = 26420.927149 eV Total energy + Delta-G solvation = -4618.356031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.38387 -47.86175 -47.84634 -40.24833 -38.41652 -35.32718 -34.56490 -32.92806 -32.05790 -29.76672 -28.16212 -26.80962 -26.54836 -25.94559 -24.88007 -22.59553 -21.56244 -20.63365 -20.19248 -18.93668 -18.64688 -18.08997 -17.80385 -17.01520 -16.22675 -15.87047 -15.65287 -14.93586 -14.77737 -14.72551 -14.28913 -14.20546 -14.07411 -14.00678 -13.96193 -13.86854 -13.57338 -13.38389 -13.28732 -13.24818 -12.70911 -12.55211 -12.30771 -11.69405 -11.68399 -11.62708 -11.56520 -11.51390 -11.32116 -11.09668 -10.91954 -10.70775 -10.62347 -10.25149 -10.13050 -10.00070 -9.87252 -9.68026 -9.43598 -8.73254 -8.48524 -6.70957 -5.82626 -3.24100 2.43093 2.63844 3.16102 3.34167 3.42878 3.44455 3.57394 3.78465 3.80095 4.37287 4.46435 4.55017 4.75523 4.96489 5.16675 5.19006 5.20079 5.24726 5.37371 5.50971 5.53094 5.53907 5.63510 5.82114 5.90190 6.00654 6.03425 6.05534 6.17902 6.26799 6.36497 6.42408 6.44294 6.59858 6.66661 6.78756 6.88404 6.94574 7.00394 7.27836 7.55576 7.64993 7.77449 8.27915 8.41149 9.17647 9.80922 10.37597 11.26053 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.029326 B = 0.002501 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.567103 B =11192.852305 C =11277.777350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.116 4.116 3 H 0.123 0.877 4 C -0.146 4.146 5 C 0.516 3.484 6 O -0.539 6.539 7 N -0.717 5.717 8 C 0.163 3.837 9 H 0.081 0.919 10 C -0.142 4.142 11 C 0.147 3.853 12 N -0.589 5.589 13 C -0.249 4.249 14 H 0.066 0.934 15 C 0.003 3.997 16 N -0.902 5.902 17 Si 0.899 3.101 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.291 1.291 21 C 0.186 3.814 22 C -0.098 4.098 23 C -0.127 4.127 24 C -0.134 4.134 25 C 0.452 3.548 26 F -0.185 7.185 27 F -0.182 7.182 28 F -0.183 7.183 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.397 0.603 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.019 0.981 39 H 0.253 0.747 40 H 0.093 0.907 41 H 0.019 0.981 42 H 0.029 0.971 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.055 0.945 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.028 -6.587 19.646 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.136 4.136 3 H 0.141 0.859 4 C -0.186 4.186 5 C 0.301 3.699 6 O -0.416 6.416 7 N -0.368 5.368 8 C 0.060 3.940 9 H 0.100 0.900 10 C -0.182 4.182 11 C 0.020 3.980 12 N -0.311 5.311 13 C -0.379 4.379 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.546 5.546 17 Si 0.729 3.271 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.218 1.218 21 C 0.060 3.940 22 C -0.100 4.100 23 C -0.184 4.184 24 C -0.192 4.192 25 C 0.398 3.602 26 F -0.166 7.166 27 F -0.164 7.164 28 F -0.165 7.165 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.232 0.768 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.111 0.889 41 H 0.037 0.963 42 H 0.048 0.952 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.501 -5.899 19.581 20.505 hybrid contribution 0.867 -0.727 -0.599 1.280 sum 2.369 -6.626 18.982 20.244 Atomic orbital electron populations 1.22012 0.90864 1.03370 1.05351 1.22155 1.00393 1.01685 0.89350 0.85908 1.21734 1.03815 1.00821 0.92268 1.20120 0.79629 0.85658 0.84471 1.90689 1.40101 1.24366 1.86477 1.46340 1.56810 1.27665 1.05937 1.21028 0.98654 0.91868 0.82464 0.90045 1.22439 0.98951 0.97628 0.99226 1.20875 0.97998 0.91873 0.87260 1.44059 1.53133 1.24652 1.09297 1.19197 1.00085 1.35218 0.83408 0.91646 1.25020 0.95073 1.02064 0.97400 1.70032 1.09273 1.48571 1.26749 0.86270 0.79934 0.77452 0.83416 1.20278 1.21603 1.21765 1.20816 0.91133 0.88692 0.93379 1.21577 0.96017 0.95368 0.97059 1.21748 0.96924 1.00527 0.99235 1.21760 0.98853 0.98095 1.00452 1.20697 0.75358 0.77709 0.86395 1.93182 1.30189 1.96427 1.96820 1.93176 1.88470 1.80741 1.53978 1.93169 1.88445 1.38013 1.96838 0.91859 0.91481 0.88114 0.87735 0.87817 0.76829 0.92789 0.91844 0.92591 0.96270 0.93676 0.88893 0.96299 0.95176 0.92918 0.91074 0.93061 0.92579 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 8.69 37.16 0.32 -1.12 16 2 C -0.12 -1.03 2.01 -90.62 -0.18 -1.21 16 3 H 0.12 1.13 7.95 -51.93 -0.41 0.72 16 4 C -0.15 -1.25 4.93 -27.89 -0.14 -1.38 16 5 C 0.52 6.27 7.51 -10.99 -0.08 6.19 16 6 O -0.54 -8.36 13.63 5.55 0.08 -8.28 16 7 N -0.72 -8.84 4.29 -53.77 -0.23 -9.07 16 8 C 0.16 2.60 1.57 -67.89 -0.11 2.50 16 9 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 10 C -0.14 -2.43 5.31 -26.61 -0.14 -2.57 16 11 C 0.15 3.01 6.52 -3.71 -0.02 2.99 16 12 N -0.59 -13.91 2.43 -172.32 -0.42 -14.33 16 13 C -0.25 -6.53 9.59 -15.06 -0.14 -6.67 16 14 H 0.07 1.70 7.89 -52.48 -0.41 1.29 16 15 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 16 N -0.90 -25.28 11.19 55.49 0.62 -24.66 16 17 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.19 4.13 3.99 -3.71 -0.01 4.11 16 22 C -0.10 -1.64 0.56 -154.38 -0.09 -1.73 16 23 C -0.13 -2.02 7.83 37.16 0.29 -1.73 16 24 C -0.13 -1.95 8.31 37.16 0.31 -1.64 16 25 C 0.45 4.10 2.69 37.16 0.10 4.20 16 26 F -0.18 -1.76 16.71 2.25 0.04 -1.72 16 27 F -0.18 -1.79 16.80 2.25 0.04 -1.75 16 28 F -0.18 -1.71 16.37 2.25 0.04 -1.67 16 29 H 0.06 0.52 7.80 -51.93 -0.41 0.12 16 30 H 0.07 0.56 7.80 -51.93 -0.41 0.16 16 31 H 0.10 1.13 5.95 -51.93 -0.31 0.82 16 32 H 0.10 0.73 7.94 -51.92 -0.41 0.32 16 33 H 0.10 0.74 7.66 -51.93 -0.40 0.34 16 34 H 0.40 4.04 6.65 -40.82 -0.27 3.77 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.07 6.34 -51.93 -0.33 0.74 16 37 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.03 0.37 6.58 -51.93 -0.34 0.03 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 1.28 5.97 -51.93 -0.31 0.97 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.04 0.52 7.35 -51.93 -0.38 0.14 16 LS Contribution 371.35 15.07 5.60 5.60 Total: -1.00 -28.88 371.35 -6.44 -35.32 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.18 Total: 2.62 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 0.02 Total: 1.92 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.03 Total: -48.06 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.08 Total: -8.28 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.11 Total: -5.15 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.88 -6.44 -35.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755142591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.855 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds