Wall clock time and date at job start Sat Apr 11 2020 04:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47005 * 2 1 4 4 C 1.52996 * 109.47426 * 239.99830 * 2 1 3 5 5 C 1.50699 * 109.47497 * 64.99804 * 4 2 1 6 6 O 1.21285 * 119.99733 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00270 * 180.02562 * 5 4 2 8 8 C 1.46498 * 119.99818 * 179.72949 * 7 5 4 9 9 H 1.08995 * 109.45932 * 324.96382 * 8 7 5 10 10 C 1.53034 * 109.46280 * 84.93147 * 8 7 5 11 11 C 1.53195 * 109.31210 * 181.38686 * 10 8 7 12 12 N 1.46925 * 108.77296 * 305.35885 * 11 10 8 13 13 C 1.36931 * 120.63455 * 233.58867 * 12 11 10 14 14 H 1.08006 * 119.99874 * 27.69443 * 13 12 11 15 15 C 1.38818 * 120.00354 * 207.69363 * 13 12 11 16 16 N 1.31619 * 119.99708 * 17.36714 * 15 13 12 17 17 Si 1.86802 * 120.00075 * 197.36267 * 15 13 12 18 18 H 1.48504 * 109.47255 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46833 * 119.99846 * 17 15 13 20 20 H 1.48494 * 109.47080 * 240.00128 * 17 15 13 21 21 C 1.46926 * 118.73696 * 53.60996 * 12 11 10 22 22 C 1.53044 * 109.45422 * 204.99880 * 8 7 5 23 23 C 1.53006 * 109.49779 * 298.55971 * 22 8 7 24 24 C 1.53001 * 109.50060 * 58.66047 * 22 8 7 25 25 C 1.52996 * 109.46860 * 119.99303 * 2 1 3 26 26 F 1.39902 * 109.47036 * 180.02562 * 25 2 1 27 27 F 1.39897 * 109.47636 * 300.00036 * 25 2 1 28 28 F 1.39905 * 109.47210 * 60.00742 * 25 2 1 29 29 H 1.09001 * 109.47005 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47451 * 300.00364 * 1 2 3 31 31 H 1.09001 * 109.46624 * 60.00841 * 1 2 3 32 32 H 1.09009 * 109.46786 * 304.99795 * 4 2 1 33 33 H 1.08997 * 109.47236 * 185.00293 * 4 2 1 34 34 H 0.97003 * 119.99352 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.49419 * 301.33066 * 10 8 7 36 36 H 1.08996 * 109.50363 * 61.42980 * 10 8 7 37 37 H 1.08998 * 109.58421 * 185.57492 * 11 10 8 38 38 H 1.08996 * 109.59305 * 65.14602 * 11 10 8 39 39 H 0.96993 * 119.99544 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.58935 * 186.60443 * 21 12 11 41 41 H 1.09004 * 109.70638 * 66.25382 * 21 12 11 42 42 H 1.08999 * 109.46422 * 60.00303 * 23 22 8 43 43 H 1.08998 * 109.46927 * 180.02562 * 23 22 8 44 44 H 1.09003 * 109.47032 * 300.00635 * 23 22 8 45 45 H 1.08996 * 109.46917 * 60.00268 * 24 22 8 46 46 H 1.08999 * 109.46942 * 180.02562 * 24 22 8 47 47 H 1.08997 * 109.46743 * 299.99547 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6415 0.0569 -2.4766 6 8 1.0118 1.0873 -2.3633 7 7 1.9846 -0.3921 -3.7001 8 6 1.5920 0.3613 -4.8936 9 1 0.6140 0.8145 -4.7314 10 6 2.6233 1.4585 -5.1662 11 6 2.1914 2.2661 -6.3942 12 7 1.9817 1.3426 -7.5176 13 6 2.6160 1.5442 -8.7143 14 1 3.5651 2.0589 -8.7424 15 6 2.0392 1.0870 -9.8913 16 7 0.7608 0.7754 -9.9199 17 14 3.0775 0.9141 -11.4345 18 1 4.4738 1.3253 -11.1403 19 1 3.0632 -0.5010 -11.8847 20 1 2.5211 1.7798 -12.5050 21 6 1.0780 0.1990 -7.3326 22 6 1.5224 -0.5854 -6.0941 23 6 2.9031 -1.1953 -6.3441 24 6 0.5150 -1.7007 -5.8073 25 6 2.0400 -0.7211 1.2493 26 9 3.4390 -0.7206 1.2496 27 9 1.5737 -0.0615 2.3915 28 9 1.5737 -2.0402 1.2494 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8901 32 1 1.6055 -1.7199 -1.2950 33 1 3.1264 -0.7995 -1.2055 34 1 2.4886 -1.2160 -3.7906 35 1 2.6892 2.1188 -4.3014 36 1 3.5966 1.0048 -5.3530 37 1 2.9701 2.9840 -6.6518 38 1 1.2627 2.7936 -6.1767 39 1 0.3579 0.4556 -10.7422 40 1 1.1221 -0.4471 -8.2095 41 1 0.0576 0.5557 -7.1926 42 1 3.2201 -1.7508 -5.4615 43 1 2.8532 -1.8691 -7.1994 44 1 3.6198 -0.4002 -6.5497 45 1 -0.4685 -1.2653 -5.6308 46 1 0.4662 -2.3749 -6.6623 47 1 0.8301 -2.2566 -4.9243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755142591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:26 Heat of formation + Delta-G solvation = -203.986543 kcal Electronic energy + Delta-G solvation = -31039.968711 eV Core-core repulsion = 26420.927149 eV Total energy + Delta-G solvation = -4619.041562 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -51.09659 -48.58507 -48.55290 -41.40630 -39.73758 -36.45551 -35.83015 -34.25120 -33.81619 -31.35151 -29.12779 -28.10806 -27.58710 -27.30065 -26.46476 -24.06421 -22.48936 -22.26371 -21.21073 -19.83122 -19.46530 -19.29559 -18.75541 -18.53445 -17.31392 -17.00102 -16.70237 -16.62953 -15.72749 -15.61843 -15.50723 -15.32736 -15.20731 -15.00246 -14.98266 -14.81948 -14.73227 -14.67721 -14.53555 -14.22290 -14.00056 -13.81611 -13.28605 -13.23259 -13.03645 -12.87008 -12.68308 -12.62695 -12.41166 -12.37204 -12.34564 -12.24796 -12.23652 -11.88286 -11.80345 -11.58973 -11.28735 -11.14469 -10.74989 -10.52676 -9.90285 -8.66687 -7.85557 -5.29865 1.46660 1.49570 1.59197 1.67400 1.70519 2.23261 2.52498 2.84464 3.04314 3.08694 3.29846 3.62302 3.67446 3.76771 3.87319 3.97792 4.03793 4.14817 4.26939 4.38552 4.47809 4.55862 4.57702 4.62108 4.69518 4.80890 4.86038 4.89867 4.95517 5.00165 5.01701 5.06270 5.13714 5.26462 5.30388 5.35018 5.39113 5.46947 5.62514 5.64048 5.73219 5.78077 6.40913 6.64358 7.17017 7.32997 7.87136 8.39578 9.21028 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.029326 B = 0.002501 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.567103 B =11192.852305 C =11277.777350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 H 0.118 0.882 4 C -0.137 4.137 5 C 0.516 3.484 6 O -0.574 6.574 7 N -0.707 5.707 8 C 0.177 3.823 9 H 0.055 0.945 10 C -0.127 4.127 11 C 0.143 3.857 12 N -0.603 5.603 13 C -0.254 4.254 14 H 0.066 0.934 15 C -0.048 4.048 16 N -0.934 5.934 17 Si 0.962 3.038 18 H -0.267 1.267 19 H -0.289 1.289 20 H -0.297 1.297 21 C 0.195 3.805 22 C -0.088 4.088 23 C -0.120 4.120 24 C -0.128 4.128 25 C 0.459 3.541 26 F -0.186 7.186 27 F -0.188 7.188 28 F -0.182 7.182 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.412 0.588 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.003 0.997 39 H 0.249 0.751 40 H 0.061 0.939 41 H -0.016 1.016 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.050 0.950 45 H 0.040 0.960 46 H 0.052 0.948 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.754 -8.365 21.549 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.134 4.134 3 H 0.136 0.864 4 C -0.177 4.177 5 C 0.304 3.696 6 O -0.454 6.454 7 N -0.359 5.359 8 C 0.072 3.928 9 H 0.073 0.927 10 C -0.167 4.167 11 C 0.017 3.983 12 N -0.326 5.326 13 C -0.385 4.385 14 H 0.084 0.916 15 C -0.243 4.243 16 N -0.581 5.581 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.216 1.216 20 H -0.224 1.224 21 C 0.069 3.931 22 C -0.090 4.090 23 C -0.178 4.178 24 C -0.186 4.186 25 C 0.405 3.595 26 F -0.167 7.167 27 F -0.169 7.169 28 F -0.164 7.164 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.250 0.750 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.021 0.979 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.002 0.998 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.071 0.929 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.256 -7.697 21.522 23.088 hybrid contribution 0.284 -0.088 -1.142 1.180 sum 3.540 -7.785 20.380 22.102 Atomic orbital electron populations 1.21953 0.91177 1.03782 1.04437 1.22110 1.00119 1.01593 0.89590 0.86409 1.21736 1.05343 1.00972 0.89617 1.20720 0.78518 0.85284 0.85086 1.90698 1.41523 1.26184 1.86951 1.46056 1.57069 1.27908 1.04852 1.20548 0.97068 0.91567 0.83636 0.92721 1.22235 0.99485 0.97640 0.97362 1.20970 0.97293 0.92082 0.87975 1.44282 1.53025 1.25840 1.09440 1.19483 1.00053 1.34413 0.84501 0.91640 1.25719 0.95970 1.02537 1.00105 1.70190 1.10785 1.49988 1.27114 0.85287 0.78887 0.76988 0.79772 1.19094 1.21575 1.22394 1.20601 0.89446 0.88262 0.94823 1.21340 0.97429 0.95513 0.94747 1.21672 0.95302 0.99932 1.00855 1.21718 0.97712 0.97299 1.01888 1.20597 0.75207 0.77588 0.86095 1.93183 1.30288 1.96429 1.96806 1.93170 1.88545 1.80895 1.54318 1.93174 1.88430 1.37947 1.96818 0.90776 0.91139 0.90276 0.85315 0.85526 0.74967 0.92128 0.90876 0.92614 0.97895 0.94192 0.92059 0.99792 0.90748 0.94020 0.93113 0.94033 0.92906 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 8.69 71.98 0.63 -1.94 16 2 C -0.11 -1.74 2.01 -10.80 -0.02 -1.76 16 3 H 0.12 1.95 7.95 -2.39 -0.02 1.94 16 4 C -0.14 -1.81 4.93 29.85 0.15 -1.67 16 5 C 0.52 11.18 7.51 87.66 0.66 11.84 16 6 O -0.57 -17.15 13.63 -3.05 -0.04 -17.19 16 7 N -0.71 -15.26 4.29 -442.42 -1.90 -17.16 16 8 C 0.18 5.46 1.57 45.02 0.07 5.53 16 9 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 10 C -0.13 -4.23 5.31 30.67 0.16 -4.07 16 11 C 0.14 5.99 6.52 86.36 0.56 6.55 16 12 N -0.60 -29.29 2.43 -699.08 -1.70 -30.99 16 13 C -0.25 -13.57 9.59 84.04 0.81 -12.76 16 14 H 0.07 3.43 7.89 -2.91 -0.02 3.41 16 15 C -0.05 -2.62 4.91 84.86 0.42 -2.20 16 16 N -0.93 -54.34 11.19 21.65 0.24 -54.09 16 17 Si 0.96 43.98 29.59 68.60 2.03 46.01 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 21 C 0.20 8.97 3.99 86.36 0.34 9.32 16 22 C -0.09 -2.90 0.56 -52.10 -0.03 -2.93 16 23 C -0.12 -3.57 7.83 71.98 0.56 -3.01 16 24 C -0.13 -3.55 8.31 71.98 0.60 -2.95 16 25 C 0.46 7.05 2.69 71.98 0.19 7.25 16 26 F -0.19 -2.98 16.71 44.97 0.75 -2.23 16 27 F -0.19 -3.31 16.80 44.97 0.76 -2.56 16 28 F -0.18 -2.81 16.37 44.97 0.74 -2.08 16 29 H 0.07 1.04 7.80 -2.39 -0.02 1.02 16 30 H 0.07 1.08 7.80 -2.39 -0.02 1.07 16 31 H 0.08 1.70 5.95 -2.39 -0.01 1.69 16 32 H 0.13 1.17 7.94 -2.38 -0.02 1.15 16 33 H 0.13 1.19 7.66 -2.39 -0.02 1.17 16 34 H 0.41 6.42 6.65 -92.71 -0.62 5.80 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.07 2.32 6.34 -2.39 -0.02 2.31 16 37 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 38 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.06 3.21 6.04 -2.38 -0.01 3.19 16 41 H -0.02 -0.83 8.14 -2.38 -0.02 -0.84 16 42 H 0.07 1.54 6.58 -2.39 -0.02 1.52 16 43 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.05 1.73 5.97 -2.39 -0.01 1.72 16 45 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.08 1.63 7.35 -2.39 -0.02 1.61 16 Total: -1.00 -65.43 371.35 6.34 -59.08 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.37 Total: 14.02 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 5.10 Total: 7.19 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -3.36 Total: -102.24 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.04 Total: -17.19 kcal Atomic # 9 Polarization: -9.11 SS G_CDS: 2.24 Total: -6.87 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -65.43 6.34 -59.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755142591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.905 kcal (2) G-P(sol) polarization free energy of solvation -65.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds