Wall clock time and date at job start Sat Apr 11 2020 04:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46769 * 2 1 4 4 C 1.52998 * 109.47449 * 120.00102 * 2 1 3 5 5 C 1.50699 * 109.47000 * 295.00536 * 4 2 1 6 6 O 1.21282 * 120.00601 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99823 * 179.97438 * 5 4 2 8 8 C 1.46503 * 120.00003 * 179.97438 * 7 5 4 9 9 H 1.08994 * 109.45847 * 325.03049 * 8 7 5 10 10 C 1.53043 * 109.45838 * 85.00037 * 8 7 5 11 11 C 1.53194 * 109.30962 * 181.38571 * 10 8 7 12 12 N 1.46924 * 108.77727 * 305.36495 * 11 10 8 13 13 C 1.36939 * 120.62780 * 233.58989 * 12 11 10 14 14 H 1.07995 * 120.00585 * 25.20053 * 13 12 11 15 15 C 1.38811 * 119.99469 * 205.19911 * 13 12 11 16 16 N 1.31627 * 119.99946 * 202.59569 * 15 13 12 17 17 Si 1.86797 * 120.00421 * 22.59592 * 15 13 12 18 18 H 1.48498 * 109.47288 * 264.61541 * 17 15 13 19 19 H 1.48497 * 109.47014 * 24.61392 * 17 15 13 20 20 H 1.48495 * 109.47369 * 144.61319 * 17 15 13 21 21 C 1.46924 * 118.73873 * 53.86107 * 12 11 10 22 22 C 1.53037 * 109.45842 * 205.06599 * 8 7 5 23 23 C 1.52995 * 109.50060 * 298.56432 * 22 8 7 24 24 C 1.53002 * 109.49691 * 58.66782 * 22 8 7 25 25 C 1.52996 * 109.47319 * 240.00597 * 2 1 3 26 26 F 1.39901 * 109.46923 * 299.99645 * 25 2 1 27 27 F 1.39898 * 109.47256 * 59.99776 * 25 2 1 28 28 F 1.39894 * 109.47167 * 179.97438 * 25 2 1 29 29 H 1.09001 * 109.47018 * 59.99802 * 1 2 3 30 30 H 1.08998 * 109.46483 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47130 * 299.99212 * 1 2 3 32 32 H 1.08996 * 109.47565 * 175.00124 * 4 2 1 33 33 H 1.09008 * 109.46734 * 55.00194 * 4 2 1 34 34 H 0.97001 * 119.99707 * 359.97438 * 7 5 4 35 35 H 1.09003 * 109.49711 * 61.43579 * 10 8 7 36 36 H 1.09000 * 109.52604 * 301.35074 * 10 8 7 37 37 H 1.09004 * 109.58480 * 185.57771 * 11 10 8 38 38 H 1.08999 * 109.70308 * 65.22324 * 11 10 8 39 39 H 0.97003 * 119.99683 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.58657 * 65.92501 * 21 12 11 41 41 H 1.09000 * 109.58412 * 186.35512 * 21 12 11 42 42 H 1.09007 * 109.47000 * 60.00159 * 23 22 8 43 43 H 1.09001 * 109.47233 * 179.97438 * 23 22 8 44 44 H 1.09000 * 109.47353 * 300.00084 * 23 22 8 45 45 H 1.08997 * 109.47381 * 59.99583 * 24 22 8 46 46 H 1.09003 * 109.47327 * 180.02562 * 24 22 8 47 47 H 1.09006 * 109.46893 * 299.99417 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6413 0.0570 2.4765 6 8 1.0116 1.0873 2.3634 7 7 1.9845 -0.3920 3.7001 8 6 1.5974 0.3648 4.8933 9 1 1.6288 1.4317 4.6726 10 6 0.1777 -0.0285 5.3080 11 6 -0.2366 0.7898 6.5351 12 7 0.7720 0.6072 7.5878 13 6 0.4048 0.1999 8.8426 14 1 -0.5034 -0.3676 8.9820 15 6 1.2002 0.5164 9.9353 16 7 1.1275 -0.2058 11.0334 17 14 2.3736 1.9671 9.8477 18 1 3.7252 1.4880 9.4617 19 1 1.8853 2.9383 8.8361 20 1 2.4434 2.6284 11.1754 21 6 2.1811 0.8758 7.2703 22 6 2.5690 0.0512 6.0334 23 6 2.5000 -1.4402 6.3676 24 6 3.9924 0.4142 5.6056 25 6 2.0401 -0.7211 -1.2493 26 9 1.5738 -2.0401 -1.2493 27 9 1.5737 -0.0615 -2.3915 28 9 3.4390 -0.7206 -1.2495 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 3.1264 -0.7995 1.2056 33 1 1.6055 -1.7199 1.2950 34 1 2.4879 -1.2163 3.7907 35 1 0.1511 -1.0903 5.5529 36 1 -0.5106 0.1729 4.4872 37 1 -1.2062 0.4446 6.8941 38 1 -0.3001 1.8449 6.2689 39 1 1.6836 0.0152 11.7969 40 1 2.3126 1.9374 7.0610 41 1 2.8073 0.5874 8.1145 42 1 2.7728 -2.0227 5.4875 43 1 3.1925 -1.6631 7.1793 44 1 1.4860 -1.6975 6.6736 45 1 4.0409 1.4771 5.3692 46 1 4.6841 0.1903 6.4177 47 1 4.2664 -0.1668 4.7250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755142593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:31 Heat of formation + Delta-G solvation = -181.260795 kcal Electronic energy + Delta-G solvation = -31159.813369 eV Core-core repulsion = 26541.757269 eV Total energy + Delta-G solvation = -4618.056100 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.42689 -47.90660 -47.88690 -40.40071 -38.65940 -35.44286 -34.73154 -33.10336 -32.12406 -30.38039 -28.35256 -26.96724 -26.61501 -26.23436 -24.89874 -22.87319 -21.73746 -20.59432 -20.35306 -19.01122 -18.71735 -18.43740 -17.89567 -17.11072 -16.36345 -16.09642 -15.66389 -15.05718 -14.91571 -14.78498 -14.42212 -14.35632 -14.32549 -14.06611 -14.02606 -13.90237 -13.73643 -13.69303 -13.36623 -13.30533 -12.85687 -12.65120 -12.38632 -12.09518 -11.81063 -11.76226 -11.73288 -11.66468 -11.59279 -11.27719 -11.15391 -10.81598 -10.72895 -10.48142 -10.22058 -9.97211 -9.91437 -9.69698 -9.45225 -8.85957 -8.65364 -7.04493 -5.98590 -3.31509 2.37804 2.53815 3.06465 3.28075 3.46666 3.48707 3.51807 3.73252 3.73808 4.31274 4.49215 4.49364 4.67200 4.85615 4.87540 4.96878 5.12424 5.14342 5.19852 5.22963 5.38422 5.46779 5.58390 5.64517 5.67931 5.79317 5.87596 5.93849 5.98313 6.06919 6.17079 6.23052 6.27434 6.35868 6.42464 6.53954 6.58484 6.64467 6.69255 6.77737 6.97512 7.49472 7.89992 8.16689 8.28485 8.89831 9.68680 10.05217 11.17150 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.027692 B = 0.002687 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.894205 B =10419.695465 C =10677.671679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.116 4.116 3 H 0.122 0.878 4 C -0.146 4.146 5 C 0.517 3.483 6 O -0.538 6.538 7 N -0.717 5.717 8 C 0.163 3.837 9 H 0.083 0.917 10 C -0.144 4.144 11 C 0.150 3.850 12 N -0.603 5.603 13 C -0.257 4.257 14 H 0.087 0.913 15 C 0.024 3.976 16 N -0.906 5.906 17 Si 0.875 3.125 18 H -0.289 1.289 19 H -0.270 1.270 20 H -0.303 1.303 21 C 0.141 3.859 22 C -0.090 4.090 23 C -0.130 4.130 24 C -0.140 4.140 25 C 0.453 3.547 26 F -0.183 7.183 27 F -0.182 7.182 28 F -0.185 7.185 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.398 0.602 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.024 0.976 39 H 0.262 0.738 40 H 0.027 0.973 41 H 0.077 0.923 42 H 0.034 0.966 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.056 0.944 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.771 -2.868 -22.929 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.136 4.136 3 H 0.141 0.859 4 C -0.186 4.186 5 C 0.303 3.697 6 O -0.416 6.416 7 N -0.368 5.368 8 C 0.059 3.941 9 H 0.101 0.899 10 C -0.184 4.184 11 C 0.024 3.976 12 N -0.326 5.326 13 C -0.385 4.385 14 H 0.105 0.895 15 C -0.175 4.175 16 N -0.549 5.549 17 Si 0.705 3.295 18 H -0.217 1.217 19 H -0.195 1.195 20 H -0.232 1.232 21 C 0.015 3.985 22 C -0.092 4.092 23 C -0.187 4.187 24 C -0.198 4.198 25 C 0.398 3.602 26 F -0.164 7.164 27 F -0.163 7.163 28 F -0.166 7.166 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.233 0.767 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.095 0.905 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.346 -2.172 -22.832 23.178 hybrid contribution 1.222 0.242 -0.121 1.252 sum 4.568 -1.930 -22.953 23.483 Atomic orbital electron populations 1.22014 0.90809 1.03442 1.05355 1.22156 1.00439 1.01642 0.89359 0.85946 1.21733 1.03842 1.00894 0.92168 1.20133 0.79587 0.85589 0.84409 1.90690 1.39896 1.24431 1.86533 1.46288 1.57024 1.27692 1.05810 1.20987 0.94406 0.96100 0.82587 0.89896 1.22441 0.95298 1.01728 0.98910 1.20889 0.92978 0.96170 0.87585 1.44386 1.00189 1.79015 1.08972 1.18906 1.10014 1.28119 0.81466 0.89537 1.25209 0.98495 0.98479 0.95318 1.69857 1.41619 1.38268 1.05127 0.87068 0.80675 0.85500 0.76242 1.21711 1.19465 1.23155 1.21468 0.86936 0.95530 0.94602 1.21450 0.93764 0.97996 0.96033 1.21760 1.03932 0.93436 0.99545 1.21835 0.96177 1.01043 1.00722 1.20683 0.75351 0.77735 0.86383 1.93172 1.88433 1.37975 1.96833 1.93179 1.88465 1.80738 1.53961 1.93180 1.30201 1.96429 1.96819 0.91459 0.91793 0.88118 0.87785 0.87586 0.76657 0.91326 0.92297 0.91608 0.95781 0.92799 0.95535 0.90496 0.94659 0.92620 0.90525 0.92965 0.92455 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.69 37.16 0.32 -1.04 16 2 C -0.12 -0.96 2.01 -90.62 -0.18 -1.14 16 3 H 0.12 1.05 7.96 -51.93 -0.41 0.64 16 4 C -0.15 -1.14 4.93 -27.88 -0.14 -1.28 16 5 C 0.52 5.81 7.51 -10.98 -0.08 5.73 16 6 O -0.54 -7.80 13.63 5.56 0.08 -7.73 16 7 N -0.72 -8.12 4.29 -53.76 -0.23 -8.35 16 8 C 0.16 2.40 1.57 -67.89 -0.11 2.29 16 9 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16 10 C -0.14 -2.27 5.31 -26.61 -0.14 -2.41 16 11 C 0.15 2.85 6.51 -3.71 -0.02 2.83 16 12 N -0.60 -13.49 2.23 -172.05 -0.38 -13.87 16 13 C -0.26 -6.85 10.05 -15.06 -0.15 -7.00 16 14 H 0.09 2.47 8.04 -52.49 -0.42 2.05 16 15 C 0.02 0.67 5.21 -17.43 -0.09 0.58 16 16 N -0.91 -27.02 13.97 55.49 0.78 -26.24 16 17 Si 0.87 21.76 24.36 -169.99 -4.14 17.62 16 18 H -0.29 -6.91 6.68 56.52 0.38 -6.53 16 19 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 20 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 21 C 0.14 2.90 2.93 -3.48 -0.01 2.89 16 22 C -0.09 -1.42 0.56 -154.16 -0.09 -1.51 16 23 C -0.13 -2.00 7.84 37.16 0.29 -1.70 16 24 C -0.14 -1.89 8.31 37.16 0.31 -1.58 16 25 C 0.45 3.89 2.69 37.16 0.10 3.99 16 26 F -0.18 -1.63 16.37 2.25 0.04 -1.60 16 27 F -0.18 -1.72 16.80 2.25 0.04 -1.68 16 28 F -0.18 -1.67 16.71 2.25 0.04 -1.64 16 29 H 0.07 0.53 7.80 -51.93 -0.41 0.13 16 30 H 0.06 0.50 7.80 -51.93 -0.41 0.09 16 31 H 0.10 1.06 5.95 -51.93 -0.31 0.75 16 32 H 0.10 0.66 7.66 -51.93 -0.40 0.26 16 33 H 0.11 0.68 7.94 -51.92 -0.41 0.27 16 34 H 0.40 3.67 6.66 -40.82 -0.27 3.40 16 35 H 0.07 1.09 6.34 -51.93 -0.33 0.76 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.25 7.92 -51.93 -0.41 0.84 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.03 0.56 7.09 -51.93 -0.37 0.19 16 41 H 0.08 1.75 4.36 -51.93 -0.23 1.53 16 42 H 0.03 0.42 6.58 -51.92 -0.34 0.07 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.08 1.36 5.97 -51.93 -0.31 1.05 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.05 0.56 7.36 -51.93 -0.38 0.18 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -30.13 364.84 -5.39 -35.51 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.10 Total: 1.83 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 0.01 Total: 0.63 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.16 Total: -48.46 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.08 Total: -7.73 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.11 Total: -4.91 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.14 Total: 17.62 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.13 -5.39 -35.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755142593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.747 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds