Wall clock time and date at job start Sat Apr 11 2020 04:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46769 * 2 1 4 4 C 1.52998 * 109.47449 * 120.00102 * 2 1 3 5 5 C 1.50699 * 109.47000 * 295.00536 * 4 2 1 6 6 O 1.21282 * 120.00601 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99823 * 179.97438 * 5 4 2 8 8 C 1.46503 * 120.00003 * 179.97438 * 7 5 4 9 9 H 1.08994 * 109.45847 * 325.03049 * 8 7 5 10 10 C 1.53043 * 109.45838 * 85.00037 * 8 7 5 11 11 C 1.53194 * 109.30962 * 181.38571 * 10 8 7 12 12 N 1.46924 * 108.77727 * 305.36495 * 11 10 8 13 13 C 1.36939 * 120.62780 * 233.58989 * 12 11 10 14 14 H 1.07995 * 120.00585 * 25.20053 * 13 12 11 15 15 C 1.38811 * 119.99469 * 205.19911 * 13 12 11 16 16 N 1.31627 * 119.99946 * 202.59569 * 15 13 12 17 17 Si 1.86797 * 120.00421 * 22.59592 * 15 13 12 18 18 H 1.48498 * 109.47288 * 264.61541 * 17 15 13 19 19 H 1.48497 * 109.47014 * 24.61392 * 17 15 13 20 20 H 1.48495 * 109.47369 * 144.61319 * 17 15 13 21 21 C 1.46924 * 118.73873 * 53.86107 * 12 11 10 22 22 C 1.53037 * 109.45842 * 205.06599 * 8 7 5 23 23 C 1.52995 * 109.50060 * 298.56432 * 22 8 7 24 24 C 1.53002 * 109.49691 * 58.66782 * 22 8 7 25 25 C 1.52996 * 109.47319 * 240.00597 * 2 1 3 26 26 F 1.39901 * 109.46923 * 299.99645 * 25 2 1 27 27 F 1.39898 * 109.47256 * 59.99776 * 25 2 1 28 28 F 1.39894 * 109.47167 * 179.97438 * 25 2 1 29 29 H 1.09001 * 109.47018 * 59.99802 * 1 2 3 30 30 H 1.08998 * 109.46483 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47130 * 299.99212 * 1 2 3 32 32 H 1.08996 * 109.47565 * 175.00124 * 4 2 1 33 33 H 1.09008 * 109.46734 * 55.00194 * 4 2 1 34 34 H 0.97001 * 119.99707 * 359.97438 * 7 5 4 35 35 H 1.09003 * 109.49711 * 61.43579 * 10 8 7 36 36 H 1.09000 * 109.52604 * 301.35074 * 10 8 7 37 37 H 1.09004 * 109.58480 * 185.57771 * 11 10 8 38 38 H 1.08999 * 109.70308 * 65.22324 * 11 10 8 39 39 H 0.97003 * 119.99683 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.58657 * 65.92501 * 21 12 11 41 41 H 1.09000 * 109.58412 * 186.35512 * 21 12 11 42 42 H 1.09007 * 109.47000 * 60.00159 * 23 22 8 43 43 H 1.09001 * 109.47233 * 179.97438 * 23 22 8 44 44 H 1.09000 * 109.47353 * 300.00084 * 23 22 8 45 45 H 1.08997 * 109.47381 * 59.99583 * 24 22 8 46 46 H 1.09003 * 109.47327 * 180.02562 * 24 22 8 47 47 H 1.09006 * 109.46893 * 299.99417 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6413 0.0570 2.4765 6 8 1.0116 1.0873 2.3634 7 7 1.9845 -0.3920 3.7001 8 6 1.5974 0.3648 4.8933 9 1 1.6288 1.4317 4.6726 10 6 0.1777 -0.0285 5.3080 11 6 -0.2366 0.7898 6.5351 12 7 0.7720 0.6072 7.5878 13 6 0.4048 0.1999 8.8426 14 1 -0.5034 -0.3676 8.9820 15 6 1.2002 0.5164 9.9353 16 7 1.1275 -0.2058 11.0334 17 14 2.3736 1.9671 9.8477 18 1 3.7252 1.4880 9.4617 19 1 1.8853 2.9383 8.8361 20 1 2.4434 2.6284 11.1754 21 6 2.1811 0.8758 7.2703 22 6 2.5690 0.0512 6.0334 23 6 2.5000 -1.4402 6.3676 24 6 3.9924 0.4142 5.6056 25 6 2.0401 -0.7211 -1.2493 26 9 1.5738 -2.0401 -1.2493 27 9 1.5737 -0.0615 -2.3915 28 9 3.4390 -0.7206 -1.2495 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 3.1264 -0.7995 1.2056 33 1 1.6055 -1.7199 1.2950 34 1 2.4879 -1.2163 3.7907 35 1 0.1511 -1.0903 5.5529 36 1 -0.5106 0.1729 4.4872 37 1 -1.2062 0.4446 6.8941 38 1 -0.3001 1.8449 6.2689 39 1 1.6836 0.0152 11.7969 40 1 2.3126 1.9374 7.0610 41 1 2.8073 0.5874 8.1145 42 1 2.7728 -2.0227 5.4875 43 1 3.1925 -1.6631 7.1793 44 1 1.4860 -1.6975 6.6736 45 1 4.0409 1.4771 5.3692 46 1 4.6841 0.1903 6.4177 47 1 4.2664 -0.1668 4.7250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755142593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:30 Heat of formation + Delta-G solvation = -199.560132 kcal Electronic energy + Delta-G solvation = -31160.606888 eV Core-core repulsion = 26541.757269 eV Total energy + Delta-G solvation = -4618.849619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -51.09974 -48.58846 -48.55751 -41.48446 -39.88058 -36.56831 -35.85233 -34.35206 -33.93397 -31.93799 -29.20882 -28.19280 -27.72397 -27.30300 -26.46968 -24.33987 -22.56017 -22.17213 -21.26148 -20.03361 -19.58616 -19.34121 -18.81313 -18.56373 -17.39306 -17.26793 -16.86376 -16.40699 -16.07622 -15.77884 -15.50675 -15.41530 -15.20384 -15.02040 -14.98067 -14.91560 -14.74015 -14.69632 -14.52205 -14.33849 -14.28087 -13.93666 -13.76598 -13.24469 -13.20481 -13.00985 -12.84401 -12.62282 -12.42352 -12.35655 -12.31617 -12.26781 -12.22521 -12.05104 -11.82611 -11.52430 -11.40504 -11.15740 -10.87458 -10.60975 -9.94513 -8.95587 -8.15065 -5.43013 1.27473 1.41165 1.48347 1.65794 1.70504 2.20784 2.41157 2.84123 3.03737 3.05186 3.08505 3.34325 3.61475 3.65402 3.86572 3.91724 3.95905 3.98404 4.26201 4.31225 4.32222 4.49553 4.55872 4.57427 4.60079 4.68361 4.77719 4.83494 4.84504 4.88390 4.95724 4.97010 5.02304 5.06882 5.12774 5.21864 5.28403 5.35432 5.38079 5.58373 5.66279 5.87210 6.13779 6.61714 6.91736 7.30611 7.63820 8.03607 9.04606 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.027692 B = 0.002687 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.894205 B =10419.695465 C =10677.671679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 H 0.119 0.881 4 C -0.138 4.138 5 C 0.519 3.481 6 O -0.571 6.571 7 N -0.708 5.708 8 C 0.175 3.825 9 H 0.067 0.933 10 C -0.131 4.131 11 C 0.145 3.855 12 N -0.613 5.613 13 C -0.238 4.238 14 H 0.056 0.944 15 C -0.031 4.031 16 N -0.953 5.953 17 Si 0.933 3.067 18 H -0.274 1.274 19 H -0.266 1.266 20 H -0.314 1.314 21 C 0.135 3.865 22 C -0.082 4.082 23 C -0.125 4.125 24 C -0.136 4.136 25 C 0.458 3.542 26 F -0.183 7.183 27 F -0.188 7.188 28 F -0.186 7.186 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.413 0.587 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.026 0.974 39 H 0.260 0.740 40 H 0.024 0.976 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.039 0.961 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.378 -3.369 -25.936 26.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.133 4.133 3 H 0.137 0.863 4 C -0.178 4.178 5 C 0.306 3.694 6 O -0.451 6.451 7 N -0.360 5.360 8 C 0.070 3.930 9 H 0.086 0.914 10 C -0.171 4.171 11 C 0.020 3.980 12 N -0.337 5.337 13 C -0.368 4.368 14 H 0.074 0.926 15 C -0.226 4.226 16 N -0.600 5.600 17 Si 0.763 3.237 18 H -0.200 1.200 19 H -0.191 1.191 20 H -0.243 1.243 21 C 0.009 3.991 22 C -0.085 4.085 23 C -0.182 4.182 24 C -0.194 4.194 25 C 0.404 3.596 26 F -0.165 7.165 27 F -0.170 7.170 28 F -0.167 7.167 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.250 0.750 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.975 -2.684 -25.905 26.514 hybrid contribution 0.615 0.379 0.734 1.030 sum 5.590 -2.305 -25.171 25.887 Atomic orbital electron populations 1.21958 0.91173 1.03743 1.04516 1.22113 1.00111 1.01602 0.89522 0.86272 1.21741 1.05395 1.00957 0.89706 1.20660 0.78553 0.85190 0.84958 1.90697 1.41282 1.26104 1.86974 1.46034 1.57240 1.27912 1.04798 1.20575 0.93222 0.95694 0.83517 0.91447 1.22259 0.96479 1.00978 0.97335 1.21019 0.92078 0.96885 0.88016 1.44462 1.01928 1.79152 1.08147 1.18836 1.08374 1.26193 0.83405 0.92615 1.25732 1.00950 1.00677 0.95206 1.69972 1.43795 1.40129 1.06102 0.86107 0.79760 0.82363 0.75448 1.20046 1.19063 1.24335 1.21506 0.85293 0.96167 0.96103 1.21287 0.95680 0.97300 0.94192 1.21702 1.01899 0.93648 1.00939 1.21817 0.93996 1.01655 1.01941 1.20631 0.75211 0.77586 0.86162 1.93175 1.88435 1.38022 1.96821 1.93170 1.88546 1.80889 1.54359 1.93180 1.30297 1.96427 1.96809 0.91201 0.90921 0.90037 0.85454 0.85489 0.74952 0.91208 0.91356 0.92363 0.95618 0.93072 0.95833 0.92845 0.90330 0.94132 0.93275 0.92973 0.92723 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 8.69 71.98 0.63 -1.73 16 2 C -0.11 -1.56 2.01 -10.79 -0.02 -1.58 16 3 H 0.12 1.76 7.96 -2.39 -0.02 1.74 16 4 C -0.14 -1.60 4.93 29.85 0.15 -1.45 16 5 C 0.52 9.90 7.51 87.66 0.66 10.56 16 6 O -0.57 -15.31 13.63 -3.04 -0.04 -15.35 16 7 N -0.71 -13.33 4.29 -442.40 -1.90 -15.23 16 8 C 0.17 4.74 1.57 45.02 0.07 4.81 16 9 H 0.07 2.11 7.58 -2.39 -0.02 2.09 16 10 C -0.13 -3.93 5.31 30.67 0.16 -3.77 16 11 C 0.15 5.52 6.51 86.36 0.56 6.08 16 12 N -0.61 -27.63 2.23 -698.25 -1.55 -29.19 16 13 C -0.24 -13.09 10.05 84.03 0.84 -12.25 16 14 H 0.06 3.34 8.04 -2.91 -0.02 3.32 16 15 C -0.03 -1.77 5.21 84.86 0.44 -1.33 16 16 N -0.95 -58.88 13.97 21.65 0.30 -58.58 16 17 Si 0.93 45.95 24.36 68.60 1.67 47.62 16 18 H -0.27 -12.62 6.68 99.48 0.66 -11.96 16 19 H -0.27 -12.73 6.54 99.48 0.65 -12.08 16 20 H -0.31 -15.90 7.11 99.48 0.71 -15.19 16 21 C 0.13 5.44 2.93 86.51 0.25 5.69 16 22 C -0.08 -2.42 0.56 -51.96 -0.03 -2.45 16 23 C -0.12 -3.57 7.84 71.98 0.56 -3.01 16 24 C -0.14 -3.22 8.31 71.98 0.60 -2.62 16 25 C 0.46 6.57 2.69 71.98 0.19 6.76 16 26 F -0.18 -2.70 16.37 44.97 0.74 -1.97 16 27 F -0.19 -3.15 16.80 44.97 0.76 -2.40 16 28 F -0.19 -2.78 16.71 44.97 0.75 -2.03 16 29 H 0.07 0.99 7.80 -2.39 -0.02 0.97 16 30 H 0.07 0.95 7.80 -2.39 -0.02 0.93 16 31 H 0.08 1.60 5.95 -2.39 -0.01 1.58 16 32 H 0.13 0.96 7.66 -2.39 -0.02 0.94 16 33 H 0.13 1.02 7.94 -2.38 -0.02 1.00 16 34 H 0.41 5.51 6.66 -92.71 -0.62 4.90 16 35 H 0.07 2.11 6.34 -2.39 -0.02 2.09 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.06 2.25 7.92 -2.38 -0.02 2.23 16 38 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.02 0.97 7.09 -2.39 -0.02 0.95 16 41 H 0.05 2.41 4.36 -2.39 -0.01 2.40 16 42 H 0.08 1.54 6.58 -2.38 -0.02 1.52 16 43 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.05 1.69 5.97 -2.39 -0.01 1.67 16 45 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.08 1.43 7.36 -2.38 -0.02 1.42 16 Total: -1.00 -67.68 364.84 6.07 -61.61 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.28 Total: 11.81 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 5.07 Total: 3.71 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -3.15 Total: -103.00 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.04 Total: -15.35 kcal Atomic # 9 Polarization: -8.64 SS G_CDS: 2.24 Total: -6.39 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.67 Total: 47.62 kcal Total: -67.68 6.07 -61.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755142593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.953 kcal (2) G-P(sol) polarization free energy of solvation -67.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds