Wall clock time and date at job start Sat Apr 11 2020 04:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47295 * 2 1 4 4 C 1.52999 * 109.46829 * 119.99607 * 2 1 3 5 5 C 1.50696 * 109.47438 * 295.00208 * 4 2 1 6 6 O 1.21277 * 119.99798 * 0.02562 * 5 4 2 7 7 N 1.34781 * 120.00062 * 180.02562 * 5 4 2 8 8 C 1.46498 * 119.99947 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.46437 * 34.96486 * 8 7 5 10 10 C 1.53041 * 109.45566 * 274.99409 * 8 7 5 11 11 C 1.53193 * 109.31191 * 178.62660 * 10 8 7 12 12 N 1.46930 * 108.77179 * 54.63872 * 11 10 8 13 13 C 1.36941 * 120.62640 * 126.36927 * 12 11 10 14 14 H 1.08005 * 119.99181 * 209.19561 * 13 12 11 15 15 C 1.38809 * 120.00509 * 29.19812 * 13 12 11 16 16 N 1.31621 * 119.99821 * 24.23101 * 15 13 12 17 17 Si 1.86798 * 120.00043 * 204.23325 * 15 13 12 18 18 H 1.48499 * 109.46860 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.47186 * 299.99863 * 17 15 13 20 20 H 1.48496 * 109.47080 * 60.00024 * 17 15 13 21 21 C 1.46922 * 118.73825 * 306.63793 * 12 11 10 22 22 C 1.52769 * 109.00500 * 53.31449 * 21 12 11 23 23 C 1.52996 * 109.56050 * 185.54974 * 22 21 12 24 24 C 1.53002 * 109.36051 * 65.49764 * 22 21 12 25 25 C 1.52993 * 109.47396 * 239.99670 * 2 1 3 26 26 F 1.39901 * 109.47318 * 300.00298 * 25 2 1 27 27 F 1.39903 * 109.47041 * 60.00077 * 25 2 1 28 28 F 1.39897 * 109.47274 * 179.97438 * 25 2 1 29 29 H 1.09002 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47426 * 300.00103 * 1 2 3 31 31 H 1.09005 * 109.47221 * 60.00222 * 1 2 3 32 32 H 1.09001 * 109.47126 * 175.00177 * 4 2 1 33 33 H 1.09006 * 109.46948 * 55.00330 * 4 2 1 34 34 H 0.97004 * 120.00068 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.49644 * 58.68248 * 10 8 7 36 36 H 1.09000 * 109.52690 * 298.59924 * 10 8 7 37 37 H 1.08996 * 109.58812 * 294.84844 * 11 10 8 38 38 H 1.09006 * 109.58730 * 174.42174 * 11 10 8 39 39 H 0.97004 * 120.00227 * 5.77752 * 16 15 13 40 40 H 1.09004 * 109.58378 * 173.14583 * 21 12 11 41 41 H 1.08997 * 109.58900 * 293.57409 * 21 12 11 42 42 H 1.09004 * 109.46711 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.47116 * 299.96085 * 23 22 21 44 44 H 1.08994 * 109.47561 * 59.96425 * 23 22 21 45 45 H 1.09002 * 109.47191 * 300.15895 * 24 22 21 46 46 H 1.09000 * 109.47203 * 60.15469 * 24 22 21 47 47 H 1.08991 * 109.47026 * 180.15878 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0108 1.0870 2.3632 7 7 1.9852 -0.3913 3.7002 8 6 1.5971 0.3650 4.8933 9 1 0.6209 0.8222 4.7319 10 6 2.6336 1.4581 5.1634 11 6 2.2068 2.2687 6.3913 12 7 1.9947 1.3471 7.5158 13 6 2.6323 1.5467 8.7112 14 1 2.8710 0.7039 9.3431 15 6 2.9717 2.8320 9.1108 16 7 2.3065 3.8650 8.6389 17 14 4.3724 3.0954 10.3182 18 1 4.5331 4.5482 10.5805 19 1 4.0680 2.3928 11.5905 20 1 5.6301 2.5548 9.7428 21 6 1.0902 0.2041 7.3315 22 6 1.5252 -0.5802 6.0947 23 6 0.5126 -1.6913 5.8104 24 6 2.9036 -1.1958 6.3435 25 6 2.0400 -0.7213 -1.2491 26 9 1.5737 -2.0403 -1.2491 27 9 1.5737 -0.0618 -2.3915 28 9 3.4390 -0.7207 -1.2494 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 3.1262 -0.7994 1.2057 33 1 1.6053 -1.7198 1.2952 34 1 2.4891 -1.2152 3.7909 35 1 2.7011 2.1173 4.2980 36 1 3.6054 1.0008 5.3491 37 1 1.2802 2.8000 6.1744 38 1 2.9890 2.9835 6.6472 39 1 1.5270 3.7252 8.0786 40 1 1.1358 -0.4429 8.2075 41 1 0.0706 0.5636 7.1928 42 1 0.8242 -2.2496 4.9276 43 1 0.4618 -2.3643 6.6664 44 1 -0.4693 -1.2520 5.6348 45 1 3.6240 -0.4036 6.5474 46 1 2.8519 -1.8689 7.1993 47 1 3.2170 -1.7535 5.4610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755142594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:34 Heat of formation + Delta-G solvation = -190.909194 kcal Electronic energy + Delta-G solvation = -31053.215478 eV Core-core repulsion = 26434.740992 eV Total energy + Delta-G solvation = -4618.474486 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.40136 -47.87659 -47.86549 -40.34629 -38.58713 -35.41127 -34.80568 -33.32252 -31.47604 -30.09665 -28.27852 -27.02787 -26.58208 -25.80870 -24.79723 -22.65034 -21.63751 -20.69539 -20.26073 -18.96952 -18.66797 -18.15031 -17.83365 -17.44836 -16.44130 -15.95606 -15.77764 -14.85218 -14.77473 -14.44581 -14.36615 -14.29940 -14.12499 -14.08758 -14.02130 -13.98056 -13.69122 -13.55125 -13.42010 -13.37997 -12.78924 -12.62333 -12.36594 -12.06669 -11.74649 -11.70637 -11.60497 -11.52674 -11.36874 -11.03096 -10.95958 -10.78433 -10.62422 -10.37134 -10.14508 -9.98670 -9.93666 -9.76660 -9.29062 -8.79238 -8.37900 -6.89685 -6.07622 -3.26362 2.40841 2.58762 3.10632 3.48014 3.50971 3.54830 3.69268 3.76256 3.76841 4.34155 4.52296 4.56935 4.70851 4.89740 4.99366 5.08993 5.15203 5.17504 5.22698 5.32707 5.47912 5.49321 5.60731 5.70897 5.73901 5.82295 5.93303 5.97470 6.02108 6.13389 6.19249 6.27567 6.36399 6.40431 6.49411 6.64882 6.67974 6.76698 6.83105 7.04637 7.17238 7.54219 7.98985 8.22130 8.56376 9.09528 9.82594 10.27203 11.20678 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.021746 B = 0.002636 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.277672 B =10619.591031 C =10998.849097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.117 4.117 3 H 0.123 0.877 4 C -0.146 4.146 5 C 0.516 3.484 6 O -0.536 6.536 7 N -0.718 5.718 8 C 0.164 3.836 9 H 0.082 0.918 10 C -0.145 4.145 11 C 0.154 3.846 12 N -0.595 5.595 13 C -0.350 4.350 14 H 0.055 0.945 15 C -0.023 4.023 16 N -0.915 5.915 17 Si 1.064 2.936 18 H -0.286 1.286 19 H -0.293 1.293 20 H -0.294 1.294 21 C 0.162 3.838 22 C -0.090 4.090 23 C -0.136 4.136 24 C -0.131 4.131 25 C 0.453 3.547 26 F -0.183 7.183 27 F -0.182 7.182 28 F -0.184 7.184 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.396 0.604 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.018 0.982 38 H 0.080 0.920 39 H 0.270 0.730 40 H 0.059 0.941 41 H 0.017 0.983 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.050 0.950 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.070 -12.984 -17.283 21.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.137 4.137 3 H 0.142 0.858 4 C -0.186 4.186 5 C 0.302 3.698 6 O -0.413 6.413 7 N -0.369 5.369 8 C 0.061 3.939 9 H 0.100 0.900 10 C -0.185 4.185 11 C 0.028 3.972 12 N -0.318 5.318 13 C -0.479 4.479 14 H 0.073 0.927 15 C -0.225 4.225 16 N -0.554 5.554 17 Si 0.893 3.107 18 H -0.211 1.211 19 H -0.220 1.220 20 H -0.221 1.221 21 C 0.035 3.965 22 C -0.092 4.092 23 C -0.194 4.194 24 C -0.188 4.188 25 C 0.399 3.601 26 F -0.165 7.165 27 F -0.163 7.163 28 F -0.166 7.166 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.231 0.769 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.035 0.965 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.094 0.906 46 H 0.069 0.931 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.599 -11.083 -16.563 19.938 hybrid contribution -0.498 -1.852 -1.027 2.176 sum -1.097 -12.935 -17.590 21.861 Atomic orbital electron populations 1.22009 0.90875 1.03320 1.05373 1.22159 1.00385 1.01755 0.89352 0.85849 1.21728 1.03879 1.00750 0.92218 1.20131 0.79623 0.85655 0.84434 1.90700 1.39948 1.24277 1.86425 1.46300 1.57048 1.27600 1.05937 1.20987 0.99010 0.91686 0.82253 0.90034 1.22510 0.98720 0.97570 0.99710 1.20912 0.98904 0.92204 0.85208 1.44090 1.50153 1.27896 1.09675 1.19919 1.36219 0.94013 0.97721 0.92712 1.25843 1.03128 0.92037 1.01501 1.70777 1.18001 1.32036 1.34608 0.83543 0.75861 0.75847 0.75400 1.21128 1.22023 1.22092 1.20817 0.92198 0.89770 0.93744 1.21282 0.96206 0.95194 0.96520 1.21799 0.98782 0.98021 1.00796 1.21791 0.96883 1.00652 0.99492 1.20680 0.75381 0.77680 0.86386 1.93166 1.88447 1.38037 1.96840 1.93180 1.88468 1.80739 1.53942 1.93183 1.30154 1.96420 1.96816 0.91880 0.88159 0.91437 0.87753 0.87737 0.76854 0.92707 0.91829 0.96366 0.90163 0.91933 0.92242 0.96545 0.93343 0.92647 0.92954 0.90609 0.93051 0.94664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 8.69 37.16 0.32 -1.12 16 2 C -0.12 -1.05 2.01 -90.62 -0.18 -1.23 16 3 H 0.12 1.17 7.96 -51.93 -0.41 0.76 16 4 C -0.15 -1.24 4.93 -27.89 -0.14 -1.37 16 5 C 0.52 6.30 7.51 -10.99 -0.08 6.21 16 6 O -0.54 -8.45 13.63 5.56 0.08 -8.38 16 7 N -0.72 -8.71 4.29 -53.77 -0.23 -8.94 16 8 C 0.16 2.59 1.57 -67.89 -0.11 2.48 16 9 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 10 C -0.14 -2.67 5.31 -26.61 -0.14 -2.81 16 11 C 0.15 3.52 4.70 -3.71 -0.02 3.50 16 12 N -0.60 -14.05 2.28 -172.57 -0.39 -14.44 16 13 C -0.35 -9.32 9.48 -15.06 -0.14 -9.47 16 14 H 0.06 1.47 7.94 -52.48 -0.42 1.05 16 15 C -0.02 -0.62 4.69 -17.43 -0.08 -0.71 16 16 N -0.91 -26.97 12.45 55.49 0.69 -26.28 16 17 Si 1.06 24.71 29.98 -169.99 -5.10 19.61 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.16 3.18 5.15 -3.93 -0.02 3.16 16 22 C -0.09 -1.37 0.56 -154.61 -0.09 -1.46 16 23 C -0.14 -1.70 8.31 37.16 0.31 -1.39 16 24 C -0.13 -1.92 7.82 37.16 0.29 -1.63 16 25 C 0.45 4.13 2.69 37.15 0.10 4.23 16 26 F -0.18 -1.69 16.37 2.25 0.04 -1.66 16 27 F -0.18 -1.81 16.80 2.25 0.04 -1.77 16 28 F -0.18 -1.78 16.71 2.25 0.04 -1.74 16 29 H 0.06 0.51 7.80 -51.93 -0.41 0.10 16 30 H 0.10 1.12 5.95 -51.93 -0.31 0.81 16 31 H 0.07 0.57 7.80 -51.93 -0.41 0.16 16 32 H 0.10 0.75 7.66 -51.93 -0.40 0.36 16 33 H 0.10 0.71 7.94 -51.93 -0.41 0.29 16 34 H 0.40 3.87 6.66 -40.82 -0.27 3.60 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.17 6.34 -51.93 -0.33 0.84 16 37 H 0.02 0.44 7.85 -51.93 -0.41 0.03 16 38 H 0.08 2.07 6.39 -51.93 -0.33 1.74 16 39 H 0.27 8.04 6.71 -40.82 -0.27 7.77 16 40 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.05 0.51 7.36 -51.93 -0.38 0.13 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 1.35 5.97 -51.93 -0.31 1.04 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.03 0.41 6.58 -51.93 -0.34 0.07 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -30.05 370.40 -6.36 -36.41 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.12 Total: 3.21 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 0.02 Total: -1.61 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.07 Total: -49.66 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.11 Total: -5.17 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.10 Total: 19.61 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.05 -6.36 -36.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755142594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.497 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds