Wall clock time and date at job start Sat Apr 11 2020 04:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47295 * 2 1 4 4 C 1.52999 * 109.46829 * 119.99607 * 2 1 3 5 5 C 1.50696 * 109.47438 * 295.00208 * 4 2 1 6 6 O 1.21277 * 119.99798 * 0.02562 * 5 4 2 7 7 N 1.34781 * 120.00062 * 180.02562 * 5 4 2 8 8 C 1.46498 * 119.99947 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.46437 * 34.96486 * 8 7 5 10 10 C 1.53041 * 109.45566 * 274.99409 * 8 7 5 11 11 C 1.53193 * 109.31191 * 178.62660 * 10 8 7 12 12 N 1.46930 * 108.77179 * 54.63872 * 11 10 8 13 13 C 1.36941 * 120.62640 * 126.36927 * 12 11 10 14 14 H 1.08005 * 119.99181 * 209.19561 * 13 12 11 15 15 C 1.38809 * 120.00509 * 29.19812 * 13 12 11 16 16 N 1.31621 * 119.99821 * 24.23101 * 15 13 12 17 17 Si 1.86798 * 120.00043 * 204.23325 * 15 13 12 18 18 H 1.48499 * 109.46860 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.47186 * 299.99863 * 17 15 13 20 20 H 1.48496 * 109.47080 * 60.00024 * 17 15 13 21 21 C 1.46922 * 118.73825 * 306.63793 * 12 11 10 22 22 C 1.52769 * 109.00500 * 53.31449 * 21 12 11 23 23 C 1.52996 * 109.56050 * 185.54974 * 22 21 12 24 24 C 1.53002 * 109.36051 * 65.49764 * 22 21 12 25 25 C 1.52993 * 109.47396 * 239.99670 * 2 1 3 26 26 F 1.39901 * 109.47318 * 300.00298 * 25 2 1 27 27 F 1.39903 * 109.47041 * 60.00077 * 25 2 1 28 28 F 1.39897 * 109.47274 * 179.97438 * 25 2 1 29 29 H 1.09002 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47426 * 300.00103 * 1 2 3 31 31 H 1.09005 * 109.47221 * 60.00222 * 1 2 3 32 32 H 1.09001 * 109.47126 * 175.00177 * 4 2 1 33 33 H 1.09006 * 109.46948 * 55.00330 * 4 2 1 34 34 H 0.97004 * 120.00068 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.49644 * 58.68248 * 10 8 7 36 36 H 1.09000 * 109.52690 * 298.59924 * 10 8 7 37 37 H 1.08996 * 109.58812 * 294.84844 * 11 10 8 38 38 H 1.09006 * 109.58730 * 174.42174 * 11 10 8 39 39 H 0.97004 * 120.00227 * 5.77752 * 16 15 13 40 40 H 1.09004 * 109.58378 * 173.14583 * 21 12 11 41 41 H 1.08997 * 109.58900 * 293.57409 * 21 12 11 42 42 H 1.09004 * 109.46711 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.47116 * 299.96085 * 23 22 21 44 44 H 1.08994 * 109.47561 * 59.96425 * 23 22 21 45 45 H 1.09002 * 109.47191 * 300.15895 * 24 22 21 46 46 H 1.09000 * 109.47203 * 60.15469 * 24 22 21 47 47 H 1.08991 * 109.47026 * 180.15878 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0108 1.0870 2.3632 7 7 1.9852 -0.3913 3.7002 8 6 1.5971 0.3650 4.8933 9 1 0.6209 0.8222 4.7319 10 6 2.6336 1.4581 5.1634 11 6 2.2068 2.2687 6.3913 12 7 1.9947 1.3471 7.5158 13 6 2.6323 1.5467 8.7112 14 1 2.8710 0.7039 9.3431 15 6 2.9717 2.8320 9.1108 16 7 2.3065 3.8650 8.6389 17 14 4.3724 3.0954 10.3182 18 1 4.5331 4.5482 10.5805 19 1 4.0680 2.3928 11.5905 20 1 5.6301 2.5548 9.7428 21 6 1.0902 0.2041 7.3315 22 6 1.5252 -0.5802 6.0947 23 6 0.5126 -1.6913 5.8104 24 6 2.9036 -1.1958 6.3435 25 6 2.0400 -0.7213 -1.2491 26 9 1.5737 -2.0403 -1.2491 27 9 1.5737 -0.0618 -2.3915 28 9 3.4390 -0.7207 -1.2494 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 3.1262 -0.7994 1.2057 33 1 1.6053 -1.7198 1.2952 34 1 2.4891 -1.2152 3.7909 35 1 2.7011 2.1173 4.2980 36 1 3.6054 1.0008 5.3491 37 1 1.2802 2.8000 6.1744 38 1 2.9890 2.9835 6.6472 39 1 1.5270 3.7252 8.0786 40 1 1.1358 -0.4429 8.2075 41 1 0.0706 0.5636 7.1928 42 1 0.8242 -2.2496 4.9276 43 1 0.4618 -2.3643 6.6664 44 1 -0.4693 -1.2520 5.6348 45 1 3.6240 -0.4036 6.5474 46 1 2.8519 -1.8689 7.1993 47 1 3.2170 -1.7535 5.4610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755142594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:33 Heat of formation + Delta-G solvation = -208.002241 kcal Electronic energy + Delta-G solvation = -31053.956688 eV Core-core repulsion = 26434.740992 eV Total energy + Delta-G solvation = -4619.215696 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.12451 -48.61303 -48.57922 -41.51726 -39.88684 -36.74034 -35.95848 -34.61696 -33.21721 -31.74009 -29.22274 -28.18365 -27.39487 -27.25484 -26.50190 -24.14240 -22.57031 -22.38704 -21.28221 -19.86598 -19.50108 -19.41913 -19.21392 -18.60757 -17.48189 -17.08498 -16.70530 -16.11506 -16.03345 -15.68322 -15.54236 -15.43559 -15.32384 -15.30195 -15.02949 -14.94450 -14.76487 -14.71548 -14.55375 -14.28361 -13.99100 -13.91575 -13.59616 -13.29088 -12.90564 -12.75912 -12.68235 -12.56352 -12.45446 -12.38641 -12.35085 -12.27653 -12.26859 -11.92830 -11.76539 -11.58797 -11.41313 -11.18038 -10.82550 -10.45018 -9.99417 -8.91346 -8.22378 -5.39733 1.58944 1.62262 1.65131 1.66692 1.84652 2.16902 2.66735 2.80905 3.00524 3.05712 3.23371 3.51024 3.59243 3.63930 3.82984 3.89377 3.93899 4.00172 4.22621 4.28015 4.35214 4.50949 4.52089 4.53640 4.57638 4.73923 4.75954 4.81005 4.86379 4.91995 4.92675 4.96452 5.05800 5.13802 5.15741 5.22802 5.25477 5.30802 5.38554 5.54526 5.64283 5.87038 6.39601 6.57281 7.06137 7.27147 7.78444 8.24241 9.02274 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.021746 B = 0.002636 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.277672 B =10619.591031 C =10998.849097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 H 0.115 0.885 4 C -0.136 4.136 5 C 0.516 3.484 6 O -0.575 6.575 7 N -0.706 5.706 8 C 0.178 3.822 9 H 0.057 0.943 10 C -0.130 4.130 11 C 0.163 3.837 12 N -0.609 5.609 13 C -0.346 4.346 14 H 0.055 0.945 15 C -0.078 4.078 16 N -0.946 5.946 17 Si 1.114 2.886 18 H -0.297 1.297 19 H -0.275 1.275 20 H -0.278 1.278 21 C 0.157 3.843 22 C -0.079 4.079 23 C -0.129 4.129 24 C -0.125 4.125 25 C 0.460 3.540 26 F -0.181 7.181 27 F -0.188 7.188 28 F -0.186 7.186 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.414 0.586 35 H 0.050 0.950 36 H 0.069 0.931 37 H -0.007 1.007 38 H 0.043 0.957 39 H 0.252 0.748 40 H 0.057 0.943 41 H 0.004 0.996 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.042 0.958 46 H 0.055 0.945 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.077 -16.309 -18.494 24.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.136 4.136 3 H 0.133 0.867 4 C -0.175 4.175 5 C 0.303 3.697 6 O -0.454 6.454 7 N -0.358 5.358 8 C 0.073 3.927 9 H 0.075 0.925 10 C -0.170 4.170 11 C 0.037 3.963 12 N -0.332 5.332 13 C -0.476 4.476 14 H 0.073 0.927 15 C -0.274 4.274 16 N -0.588 5.588 17 Si 0.938 3.062 18 H -0.223 1.223 19 H -0.201 1.201 20 H -0.204 1.204 21 C 0.031 3.969 22 C -0.081 4.081 23 C -0.187 4.187 24 C -0.183 4.183 25 C 0.406 3.594 26 F -0.162 7.162 27 F -0.169 7.169 28 F -0.167 7.167 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.252 0.748 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.011 0.989 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.022 0.978 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.396 -14.482 -17.800 22.950 hybrid contribution -0.877 -0.823 -0.680 1.382 sum -0.481 -15.305 -18.480 24.000 Atomic orbital electron populations 1.21949 0.91031 1.03892 1.04407 1.22114 1.00255 1.01501 0.89700 0.86728 1.21734 1.05304 1.01051 0.89458 1.20775 0.78498 0.85241 0.85174 1.90708 1.41548 1.26219 1.86947 1.46009 1.57260 1.27794 1.04773 1.20519 0.96708 0.91341 0.84154 0.92493 1.22280 0.99757 0.97897 0.97042 1.20660 0.96496 0.92131 0.87036 1.44256 1.51032 1.28854 1.09104 1.20180 1.35221 0.93813 0.98391 0.92735 1.27185 1.04963 0.92181 1.03098 1.70903 1.18571 1.32889 1.36481 0.82874 0.73747 0.75241 0.74310 1.22296 1.20069 1.20427 1.20995 0.90984 0.88796 0.96136 1.21106 0.97870 0.95341 0.93767 1.21748 0.97352 0.96980 1.02606 1.21726 0.95086 0.99885 1.01572 1.20565 0.75194 0.77614 0.86044 1.93173 1.88405 1.37836 1.96812 1.93172 1.88541 1.80915 1.54294 1.93183 1.30322 1.96430 1.96803 0.90510 0.90339 0.91188 0.85640 0.84928 0.74812 0.93147 0.91272 0.98889 0.93840 0.93816 0.92458 0.97767 0.90355 0.91568 0.93559 0.93907 0.92639 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 8.69 71.98 0.63 -1.95 16 2 C -0.12 -1.82 2.01 -10.80 -0.02 -1.85 16 3 H 0.11 2.04 7.96 -2.39 -0.02 2.02 16 4 C -0.14 -1.82 4.93 29.85 0.15 -1.68 16 5 C 0.52 11.40 7.51 87.65 0.66 12.06 16 6 O -0.57 -17.83 13.63 -3.02 -0.04 -17.87 16 7 N -0.71 -15.11 4.29 -442.42 -1.90 -17.01 16 8 C 0.18 5.45 1.57 45.02 0.07 5.52 16 9 H 0.06 2.07 7.58 -2.39 -0.02 2.05 16 10 C -0.13 -4.85 5.31 30.67 0.16 -4.69 16 11 C 0.16 7.87 4.70 86.36 0.41 8.28 16 12 N -0.61 -29.66 2.28 -699.90 -1.60 -31.26 16 13 C -0.35 -18.86 9.48 84.03 0.80 -18.06 16 14 H 0.05 2.93 7.94 -2.91 -0.02 2.91 16 15 C -0.08 -4.43 4.69 84.86 0.40 -4.03 16 16 N -0.95 -58.40 12.45 21.65 0.27 -58.13 16 17 Si 1.11 50.57 29.98 68.60 2.06 52.63 16 18 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 21 C 0.16 6.21 5.15 86.22 0.44 6.66 16 22 C -0.08 -2.28 0.56 -52.25 -0.03 -2.30 16 23 C -0.13 -2.80 8.31 71.98 0.60 -2.20 16 24 C -0.13 -3.33 7.82 71.98 0.56 -2.76 16 25 C 0.46 7.21 2.69 71.98 0.19 7.40 16 26 F -0.18 -2.75 16.37 44.97 0.74 -2.01 16 27 F -0.19 -3.39 16.80 44.97 0.76 -2.64 16 28 F -0.19 -3.09 16.71 44.97 0.75 -2.34 16 29 H 0.08 1.04 7.80 -2.39 -0.02 1.02 16 30 H 0.08 1.70 5.95 -2.39 -0.01 1.68 16 31 H 0.07 1.09 7.80 -2.38 -0.02 1.08 16 32 H 0.13 1.25 7.66 -2.39 -0.02 1.23 16 33 H 0.13 1.12 7.94 -2.38 -0.02 1.10 16 34 H 0.41 6.11 6.66 -92.71 -0.62 5.49 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 2.52 6.34 -2.39 -0.02 2.50 16 37 H -0.01 -0.36 7.85 -2.39 -0.02 -0.37 16 38 H 0.04 2.39 6.39 -2.38 -0.02 2.37 16 39 H 0.25 15.99 6.71 -92.71 -0.62 15.37 16 40 H 0.06 2.26 7.93 -2.38 -0.02 2.24 16 41 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.08 1.27 7.36 -2.38 -0.02 1.25 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.04 1.44 5.97 -2.39 -0.01 1.42 16 46 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.07 1.38 6.58 -2.39 -0.02 1.37 16 Total: -1.00 -69.38 370.40 6.57 -62.82 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.52 Total: 15.41 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 5.01 Total: 0.40 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -3.22 Total: -106.39 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.04 Total: -17.87 kcal Atomic # 9 Polarization: -9.24 SS G_CDS: 2.24 Total: -6.99 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 2.06 Total: 52.63 kcal Total: -69.38 6.57 -62.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755142594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.187 kcal (2) G-P(sol) polarization free energy of solvation -69.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds