Wall clock time and date at job start Sat Apr 11 2020 04:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47148 * 2 1 4 4 C 1.52997 * 109.46926 * 240.00090 * 2 1 3 5 5 C 1.53008 * 109.46984 * 66.86300 * 4 2 1 6 6 F 1.39900 * 109.47001 * 53.48743 * 5 4 2 7 7 F 1.39895 * 109.46890 * 173.49002 * 5 4 2 8 8 F 1.39899 * 109.46861 * 293.48896 * 5 4 2 9 9 C 1.50693 * 109.47042 * 120.00304 * 2 1 3 10 10 O 1.21290 * 120.00097 * 119.99818 * 9 2 1 11 11 N 1.34777 * 120.00145 * 299.99886 * 9 2 1 12 12 C 1.46498 * 120.00133 * 0.02562 * 11 9 2 13 13 C 1.46497 * 120.00087 * 180.02562 * 11 9 2 14 14 C 1.53002 * 109.47188 * 239.99961 * 13 11 9 15 15 C 1.52998 * 109.47547 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47285 * 59.99679 * 15 14 13 17 17 N 1.46497 * 109.47424 * 180.02562 * 16 15 14 18 18 C 1.36942 * 119.99742 * 275.00058 * 17 16 15 19 19 H 1.07990 * 120.00018 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99711 * 179.97438 * 18 17 16 21 21 N 1.31615 * 119.99941 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99913 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46904 * 60.00289 * 22 20 18 24 24 H 1.48497 * 109.47486 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47343 * 300.00219 * 22 20 18 26 26 C 1.53006 * 109.47130 * 300.00240 * 16 15 14 27 27 C 1.52997 * 109.47424 * 119.99775 * 13 11 9 28 28 H 1.09001 * 109.46871 * 303.93486 * 1 2 3 29 29 H 1.09003 * 109.47398 * 63.93250 * 1 2 3 30 30 H 1.09000 * 109.47026 * 183.93348 * 1 2 3 31 31 H 1.09004 * 109.47408 * 306.86539 * 4 2 1 32 32 H 1.08997 * 109.47272 * 186.85623 * 4 2 1 33 33 H 1.09000 * 109.47132 * 89.99822 * 12 11 9 34 34 H 1.09004 * 109.47271 * 210.00509 * 12 11 9 35 35 H 1.09002 * 109.46746 * 330.00206 * 12 11 9 36 36 H 1.08999 * 109.47279 * 359.97438 * 13 11 9 37 37 H 1.08999 * 109.47288 * 299.99745 * 14 13 11 38 38 H 1.09000 * 109.47201 * 59.99978 * 14 13 11 39 39 H 1.09003 * 109.47271 * 300.00253 * 15 14 13 40 40 H 1.08996 * 109.47584 * 179.97438 * 15 14 13 41 41 H 1.08999 * 109.47194 * 59.99933 * 16 15 14 42 42 H 0.97004 * 120.00326 * 94.99862 * 17 16 15 43 43 H 0.97004 * 120.00202 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.47242 * 299.99664 * 26 16 15 45 45 H 1.09000 * 109.47241 * 179.97438 * 26 16 15 46 46 H 1.09000 * 109.47102 * 299.99759 * 27 13 11 47 47 H 1.09003 * 109.47355 * 60.00069 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6755 0.0927 -2.4925 6 9 2.1400 1.4040 -2.3441 7 9 2.2677 -0.4871 -3.6196 8 9 0.2855 0.1055 -2.6506 9 6 2.0323 -0.7104 1.2304 10 8 2.7296 -1.6966 1.1191 11 7 1.7067 -0.2501 2.4545 12 6 0.8641 0.9407 2.5891 13 6 2.1955 -0.9404 3.6506 14 6 1.0058 -1.4216 4.4837 15 6 1.5162 -2.1421 5.7332 16 6 2.3657 -1.1797 6.5657 17 7 2.8549 -1.8696 7.7618 18 6 2.0701 -1.9379 8.8820 19 1 1.0904 -1.4834 8.8834 20 6 2.5334 -2.5921 10.0152 21 7 3.7272 -3.1464 10.0132 22 14 1.4632 -2.6846 11.5434 23 1 0.1951 -3.3854 11.2179 24 1 2.1825 -3.4305 12.6071 25 1 1.1614 -1.3111 12.0203 26 6 3.5554 -0.6985 5.7326 27 6 3.0453 0.0215 4.4833 28 1 -0.3633 0.5737 0.8526 29 1 -0.3634 0.4516 -0.9231 30 1 -0.3633 -1.0252 0.0705 31 1 1.5798 -1.7073 -1.3128 32 1 3.1230 -0.8287 -1.1901 33 1 -0.1838 0.6424 2.6226 34 1 1.1219 1.4663 3.5085 35 1 1.0272 1.5995 1.7361 36 1 2.8010 -1.7968 3.3539 37 1 0.4000 -0.5655 4.7805 38 1 0.4004 -2.1070 3.8905 39 1 2.1223 -2.9982 5.4370 40 1 0.6687 -2.4845 6.3269 41 1 1.7597 -0.3235 6.8620 42 1 3.7347 -2.2782 7.7604 43 1 4.0511 -3.6033 10.8052 44 1 4.1615 -1.5546 5.4363 45 1 4.1604 -0.0124 6.3255 46 1 3.8929 0.3643 3.8898 47 1 2.4395 0.8778 4.7801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755275198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:37 Heat of formation + Delta-G solvation = -191.937739 kcal Electronic energy + Delta-G solvation = -30188.169175 eV Core-core repulsion = 25569.650088 eV Total energy + Delta-G solvation = -4618.519087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.54825 -48.04613 -47.98343 -40.65328 -38.27020 -35.66367 -35.34700 -33.37690 -30.95522 -30.45147 -29.50067 -27.70232 -27.11410 -25.08767 -23.82233 -22.77858 -22.29434 -20.94318 -19.53411 -19.33471 -18.98101 -18.66488 -18.04130 -17.08197 -16.66000 -16.40769 -15.74935 -15.36641 -15.11499 -14.86462 -14.56531 -14.50984 -14.35033 -14.17430 -14.10501 -13.91767 -13.79399 -13.59917 -13.47836 -13.07302 -12.98198 -12.62957 -12.47604 -12.44669 -12.12100 -11.99317 -11.83802 -11.71293 -11.53895 -11.41567 -10.89137 -10.77810 -10.73532 -10.68052 -10.22373 -10.16737 -9.89727 -9.73688 -9.57316 -8.88393 -8.71820 -6.95307 -5.76087 -3.04820 2.28409 2.37826 2.77033 3.42047 3.43263 3.47721 3.48886 3.56512 3.66095 4.11456 4.36768 4.38078 4.58562 4.64340 4.87778 4.89669 4.97450 5.04445 5.12478 5.23004 5.26254 5.29184 5.37358 5.46952 5.50067 5.55060 5.62361 5.72241 5.78356 5.81552 5.85879 6.01807 6.21639 6.24612 6.26978 6.40290 6.54458 6.60534 6.68248 6.96383 7.11262 7.19662 7.69225 7.93105 8.42678 9.53454 10.12231 10.46619 11.46556 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.035350 B = 0.002036 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.893450 B =13749.530608 C =13926.972802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.113 4.113 3 H 0.110 0.890 4 C -0.149 4.149 5 C 0.454 3.546 6 F -0.183 7.183 7 F -0.183 7.183 8 F -0.179 7.179 9 C 0.522 3.478 10 O -0.539 6.539 11 N -0.604 5.604 12 C 0.069 3.931 13 C 0.139 3.861 14 C -0.120 4.120 15 C -0.133 4.133 16 C 0.179 3.821 17 N -0.725 5.725 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.121 4.121 27 C -0.119 4.119 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.350 10.505 -25.598 28.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.134 4.134 3 H 0.128 0.872 4 C -0.187 4.187 5 C 0.400 3.600 6 F -0.165 7.165 7 F -0.164 7.164 8 F -0.161 7.161 9 C 0.309 3.691 10 O -0.416 6.416 11 N -0.336 5.336 12 C -0.074 4.074 13 C 0.037 3.963 14 C -0.159 4.159 15 C -0.174 4.174 16 C 0.068 3.932 17 N -0.366 5.366 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.160 4.160 27 C -0.158 4.158 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.104 10.014 -25.513 28.079 hybrid contribution -0.429 -0.057 0.695 0.819 sum -6.533 9.957 -24.818 27.527 Atomic orbital electron populations 1.22456 0.91814 1.04138 1.05131 1.21241 0.98821 1.01228 0.92146 0.87236 1.22708 1.06614 1.00205 0.89189 1.20592 0.74436 0.78857 0.86136 1.93182 1.88549 1.39023 1.95742 1.93201 1.83839 1.84173 1.55192 1.93104 1.30583 1.96477 1.95914 1.20216 0.80092 0.84484 0.84298 1.90727 1.38190 1.26356 1.86330 1.47916 1.50786 1.29020 1.05829 1.22012 0.94745 0.87274 1.03324 1.21295 0.95956 0.95834 0.83257 1.21851 0.96729 1.00278 0.97076 1.22241 1.00936 0.99586 0.94608 1.20217 0.92624 0.93377 0.86933 1.42432 1.19306 1.65542 1.09293 1.19186 0.98109 1.29146 0.90503 0.91303 1.24745 0.96952 1.01065 0.98272 1.69650 1.17756 1.41458 1.29280 0.86286 0.79487 0.77473 0.83044 1.21315 1.21724 1.21318 1.21763 0.99087 1.00147 0.95033 1.21803 0.98988 0.98307 0.96685 0.90274 0.89707 0.91507 0.86448 0.86241 0.91950 0.90330 0.90974 0.88059 0.92103 0.92608 0.92462 0.91681 0.93666 0.78280 0.93475 0.92007 0.91470 0.92196 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 8.44 37.16 0.31 -0.78 16 2 C -0.11 -0.83 1.82 -91.78 -0.17 -1.00 16 3 H 0.11 0.66 6.70 -51.93 -0.35 0.31 16 4 C -0.15 -1.08 4.21 -26.73 -0.11 -1.19 16 5 C 0.45 3.35 3.13 37.16 0.12 3.47 16 6 F -0.18 -1.44 16.42 2.25 0.04 -1.41 16 7 F -0.18 -1.55 17.32 2.25 0.04 -1.51 16 8 F -0.18 -1.35 14.25 2.25 0.03 -1.32 16 9 C 0.52 5.71 7.08 -10.99 -0.08 5.63 16 10 O -0.54 -7.93 15.21 5.55 0.08 -7.84 16 11 N -0.60 -6.20 2.76 -173.94 -0.48 -6.69 16 12 C 0.07 0.48 7.85 59.85 0.47 0.95 16 13 C 0.14 1.77 2.52 -67.93 -0.17 1.60 16 14 C -0.12 -1.61 5.20 -26.73 -0.14 -1.75 16 15 C -0.13 -2.29 5.50 -26.73 -0.15 -2.44 16 16 C 0.18 3.39 2.77 -67.93 -0.19 3.20 16 17 N -0.73 -17.90 5.12 -53.43 -0.27 -18.18 16 18 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 22 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C -0.12 -1.94 5.39 -26.75 -0.14 -2.08 16 27 C -0.12 -1.50 5.18 -26.76 -0.14 -1.64 16 28 H 0.08 0.40 4.64 -51.93 -0.24 0.16 16 29 H 0.08 0.49 5.29 -51.93 -0.27 0.21 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.12 0.90 7.89 -51.93 -0.41 0.49 16 33 H 0.06 0.38 7.04 -51.93 -0.37 0.01 16 34 H 0.08 0.54 6.43 -51.93 -0.33 0.20 16 35 H 0.07 0.35 5.96 -51.93 -0.31 0.04 16 36 H 0.10 1.54 6.90 -51.93 -0.36 1.18 16 37 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.73 6.66 -51.93 -0.35 0.39 16 LS Contribution 371.86 15.07 5.60 5.60 Total: -1.00 -31.66 371.86 -6.94 -38.60 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.05 Total: 6.12 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -0.63 Total: -3.20 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.03 Total: -52.27 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.08 Total: -7.84 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.11 Total: -4.24 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.66 -6.94 -38.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755275198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.335 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds