Wall clock time and date at job start Sat Apr 11 2020 04:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47148 * 2 1 4 4 C 1.52997 * 109.46926 * 240.00090 * 2 1 3 5 5 C 1.53008 * 109.46984 * 66.86300 * 4 2 1 6 6 F 1.39900 * 109.47001 * 53.48743 * 5 4 2 7 7 F 1.39895 * 109.46890 * 173.49002 * 5 4 2 8 8 F 1.39899 * 109.46861 * 293.48896 * 5 4 2 9 9 C 1.50693 * 109.47042 * 120.00304 * 2 1 3 10 10 O 1.21290 * 120.00097 * 119.99818 * 9 2 1 11 11 N 1.34777 * 120.00145 * 299.99886 * 9 2 1 12 12 C 1.46498 * 120.00133 * 0.02562 * 11 9 2 13 13 C 1.46497 * 120.00087 * 180.02562 * 11 9 2 14 14 C 1.53002 * 109.47188 * 239.99961 * 13 11 9 15 15 C 1.52998 * 109.47547 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47285 * 59.99679 * 15 14 13 17 17 N 1.46497 * 109.47424 * 180.02562 * 16 15 14 18 18 C 1.36942 * 119.99742 * 275.00058 * 17 16 15 19 19 H 1.07990 * 120.00018 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99711 * 179.97438 * 18 17 16 21 21 N 1.31615 * 119.99941 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99913 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46904 * 60.00289 * 22 20 18 24 24 H 1.48497 * 109.47486 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47343 * 300.00219 * 22 20 18 26 26 C 1.53006 * 109.47130 * 300.00240 * 16 15 14 27 27 C 1.52997 * 109.47424 * 119.99775 * 13 11 9 28 28 H 1.09001 * 109.46871 * 303.93486 * 1 2 3 29 29 H 1.09003 * 109.47398 * 63.93250 * 1 2 3 30 30 H 1.09000 * 109.47026 * 183.93348 * 1 2 3 31 31 H 1.09004 * 109.47408 * 306.86539 * 4 2 1 32 32 H 1.08997 * 109.47272 * 186.85623 * 4 2 1 33 33 H 1.09000 * 109.47132 * 89.99822 * 12 11 9 34 34 H 1.09004 * 109.47271 * 210.00509 * 12 11 9 35 35 H 1.09002 * 109.46746 * 330.00206 * 12 11 9 36 36 H 1.08999 * 109.47279 * 359.97438 * 13 11 9 37 37 H 1.08999 * 109.47288 * 299.99745 * 14 13 11 38 38 H 1.09000 * 109.47201 * 59.99978 * 14 13 11 39 39 H 1.09003 * 109.47271 * 300.00253 * 15 14 13 40 40 H 1.08996 * 109.47584 * 179.97438 * 15 14 13 41 41 H 1.08999 * 109.47194 * 59.99933 * 16 15 14 42 42 H 0.97004 * 120.00326 * 94.99862 * 17 16 15 43 43 H 0.97004 * 120.00202 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.47242 * 299.99664 * 26 16 15 45 45 H 1.09000 * 109.47241 * 179.97438 * 26 16 15 46 46 H 1.09000 * 109.47102 * 299.99759 * 27 13 11 47 47 H 1.09003 * 109.47355 * 60.00069 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6755 0.0927 -2.4925 6 9 2.1400 1.4040 -2.3441 7 9 2.2677 -0.4871 -3.6196 8 9 0.2855 0.1055 -2.6506 9 6 2.0323 -0.7104 1.2304 10 8 2.7296 -1.6966 1.1191 11 7 1.7067 -0.2501 2.4545 12 6 0.8641 0.9407 2.5891 13 6 2.1955 -0.9404 3.6506 14 6 1.0058 -1.4216 4.4837 15 6 1.5162 -2.1421 5.7332 16 6 2.3657 -1.1797 6.5657 17 7 2.8549 -1.8696 7.7618 18 6 2.0701 -1.9379 8.8820 19 1 1.0904 -1.4834 8.8834 20 6 2.5334 -2.5921 10.0152 21 7 3.7272 -3.1464 10.0132 22 14 1.4632 -2.6846 11.5434 23 1 0.1951 -3.3854 11.2179 24 1 2.1825 -3.4305 12.6071 25 1 1.1614 -1.3111 12.0203 26 6 3.5554 -0.6985 5.7326 27 6 3.0453 0.0215 4.4833 28 1 -0.3633 0.5737 0.8526 29 1 -0.3634 0.4516 -0.9231 30 1 -0.3633 -1.0252 0.0705 31 1 1.5798 -1.7073 -1.3128 32 1 3.1230 -0.8287 -1.1901 33 1 -0.1838 0.6424 2.6226 34 1 1.1219 1.4663 3.5085 35 1 1.0272 1.5995 1.7361 36 1 2.8010 -1.7968 3.3539 37 1 0.4000 -0.5655 4.7805 38 1 0.4004 -2.1070 3.8905 39 1 2.1223 -2.9982 5.4370 40 1 0.6687 -2.4845 6.3269 41 1 1.7597 -0.3235 6.8620 42 1 3.7347 -2.2782 7.7604 43 1 4.0511 -3.6033 10.8052 44 1 4.1615 -1.5546 5.4363 45 1 4.1604 -0.0124 6.3255 46 1 3.8929 0.3643 3.8898 47 1 2.4395 0.8778 4.7801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755275198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:36 Heat of formation + Delta-G solvation = -210.564821 kcal Electronic energy + Delta-G solvation = -30188.976905 eV Core-core repulsion = 25569.650088 eV Total energy + Delta-G solvation = -4619.326818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.15065 -48.65130 -48.59041 -41.52786 -39.48504 -36.82779 -36.15796 -34.96762 -32.65172 -31.70400 -30.31599 -28.93318 -27.89793 -25.99801 -25.30101 -23.75128 -23.55654 -22.11734 -20.72669 -20.21463 -19.57930 -19.36600 -19.06474 -18.67467 -17.50906 -17.28343 -16.83312 -16.49810 -15.98269 -15.77904 -15.48518 -15.37964 -15.22431 -15.15567 -15.08256 -14.94665 -14.74418 -14.71213 -14.45648 -14.13866 -13.94552 -13.79513 -13.45351 -13.16586 -13.09211 -13.01651 -12.99434 -12.77235 -12.62554 -12.39360 -12.27802 -12.24759 -12.11891 -12.04893 -11.88849 -11.62962 -11.48498 -11.11858 -10.83439 -10.69808 -9.60921 -8.98848 -7.92260 -5.20655 1.47470 1.50458 1.54712 1.56413 1.65051 2.01734 2.57589 2.81992 2.96691 3.08052 3.40513 3.45173 3.70893 3.81076 3.82318 3.89041 3.90403 4.12617 4.23329 4.35063 4.37391 4.41114 4.49503 4.54170 4.59156 4.61165 4.64025 4.76678 4.80794 4.84372 4.91531 4.97055 5.04657 5.12481 5.16275 5.23690 5.27595 5.32423 5.49434 5.55346 5.57941 5.64628 6.30057 6.39161 7.10861 7.35318 8.13211 8.35285 9.31374 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.035350 B = 0.002036 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.893450 B =13749.530608 C =13926.972802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.104 4.104 3 H 0.130 0.870 4 C -0.147 4.147 5 C 0.461 3.539 6 F -0.184 7.184 7 F -0.190 7.190 8 F -0.178 7.178 9 C 0.517 3.483 10 O -0.584 6.584 11 N -0.601 5.601 12 C 0.058 3.942 13 C 0.145 3.855 14 C -0.106 4.106 15 C -0.124 4.124 16 C 0.174 3.826 17 N -0.741 5.741 18 C -0.235 4.235 19 H 0.077 0.923 20 C -0.081 4.081 21 N -0.973 5.973 22 Si 0.972 3.028 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.276 1.276 26 C -0.114 4.114 27 C -0.106 4.106 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.037 0.963 40 H 0.046 0.954 41 H 0.050 0.950 42 H 0.370 0.630 43 H 0.249 0.751 44 H 0.047 0.953 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.332 12.840 -26.794 30.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.125 4.125 3 H 0.148 0.852 4 C -0.186 4.186 5 C 0.407 3.593 6 F -0.165 7.165 7 F -0.171 7.171 8 F -0.160 7.160 9 C 0.306 3.694 10 O -0.465 6.465 11 N -0.331 5.331 12 C -0.083 4.083 13 C 0.041 3.959 14 C -0.145 4.145 15 C -0.165 4.165 16 C 0.066 3.934 17 N -0.380 5.380 18 C -0.367 4.367 19 H 0.095 0.905 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.801 3.199 23 H -0.205 1.205 24 H -0.225 1.225 25 H -0.202 1.202 26 C -0.153 4.153 27 C -0.145 4.145 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.201 0.799 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.143 12.408 -26.751 30.592 hybrid contribution 0.177 -0.761 0.991 1.262 sum -7.966 11.646 -25.760 29.371 Atomic orbital electron populations 1.22465 0.90507 1.03997 1.06219 1.21238 0.99683 1.01558 0.90039 0.85196 1.22672 1.06368 1.00257 0.89261 1.20496 0.74348 0.78671 0.85794 1.93181 1.88578 1.39067 1.95715 1.93189 1.84009 1.84329 1.55617 1.93108 1.30479 1.96465 1.95903 1.20834 0.79290 0.83986 0.85273 1.90714 1.40276 1.28494 1.86984 1.47907 1.50848 1.29682 1.04699 1.22353 0.94864 0.86184 1.04917 1.20964 0.95305 0.95344 0.84258 1.21697 0.97080 1.00650 0.95089 1.22032 0.99529 0.98907 0.96003 1.20468 0.93984 0.93207 0.85722 1.42698 1.18653 1.66004 1.10629 1.19598 0.98342 1.27606 0.91166 0.90466 1.25573 0.98367 1.01810 1.01500 1.69820 1.19672 1.43133 1.29737 0.85233 0.77815 0.77684 0.79186 1.20493 1.22506 1.20191 1.21640 0.97664 0.99824 0.96132 1.21691 0.99623 0.98335 0.94856 0.88695 0.89001 0.92391 0.86563 0.86746 0.90457 0.89709 0.88398 0.91010 0.89885 0.92189 0.94422 0.93551 0.93238 0.79876 0.94185 0.93398 0.91983 0.91203 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 8.44 71.98 0.61 -0.99 16 2 C -0.10 -1.27 1.82 -11.54 -0.02 -1.29 16 3 H 0.13 1.08 6.70 -2.39 -0.02 1.07 16 4 C -0.15 -1.93 4.21 30.60 0.13 -1.80 16 5 C 0.46 6.00 3.13 71.98 0.23 6.22 16 6 F -0.18 -2.47 16.42 44.97 0.74 -1.73 16 7 F -0.19 -3.01 17.32 44.97 0.78 -2.23 16 8 F -0.18 -2.30 14.25 44.97 0.64 -1.65 16 9 C 0.52 10.44 7.08 87.65 0.62 11.06 16 10 O -0.58 -17.12 15.21 -3.06 -0.05 -17.17 16 11 N -0.60 -10.79 2.76 -822.60 -2.27 -13.06 16 12 C 0.06 0.55 7.85 127.77 1.00 1.55 16 13 C 0.14 3.48 2.52 44.99 0.11 3.59 16 14 C -0.11 -2.66 5.20 30.59 0.16 -2.50 16 15 C -0.12 -4.29 5.50 30.59 0.17 -4.12 16 16 C 0.17 6.59 2.77 44.99 0.12 6.71 16 17 N -0.74 -37.28 5.12 -322.94 -1.65 -38.93 16 18 C -0.24 -12.95 9.93 84.03 0.83 -12.11 16 19 H 0.08 4.03 7.83 -2.92 -0.02 4.01 16 20 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 21 N -0.97 -60.18 13.06 21.65 0.28 -59.89 16 22 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 C -0.11 -3.60 5.39 30.58 0.16 -3.44 16 27 C -0.11 -2.47 5.18 30.58 0.16 -2.31 16 28 H 0.09 0.57 4.64 -2.39 -0.01 0.55 16 29 H 0.09 0.75 5.29 -2.39 -0.01 0.74 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.11 1.65 7.89 -2.39 -0.02 1.63 16 33 H 0.08 0.56 7.04 -2.39 -0.02 0.54 16 34 H 0.08 0.75 6.43 -2.39 -0.02 0.74 16 35 H 0.10 0.46 5.96 -2.39 -0.01 0.45 16 36 H 0.07 2.20 6.90 -2.39 -0.02 2.19 16 37 H 0.08 1.75 7.67 -2.39 -0.02 1.73 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 42 H 0.37 20.31 7.80 -92.71 -0.72 19.59 16 43 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 44 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 45 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.09 1.66 6.66 -2.39 -0.02 1.65 16 Total: -1.00 -70.26 371.86 5.52 -64.74 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.27 Total: 25.41 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 4.75 Total: -3.59 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -3.64 Total: -111.88 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.05 Total: -17.17 kcal Atomic # 9 Polarization: -7.78 SS G_CDS: 2.16 Total: -5.62 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -70.26 5.52 -64.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755275198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.826 kcal (2) G-P(sol) polarization free energy of solvation -70.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds