Wall clock time and date at job start Sat Apr 11 2020 04:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36004 * 116.99659 * 2 1 4 4 C 1.38560 * 120.07101 * 0.02562 * 3 2 1 5 5 C 1.38240 * 119.99900 * 179.70530 * 4 3 2 6 6 C 1.38254 * 120.14464 * 0.54562 * 5 4 3 7 7 C 1.50701 * 119.92589 * 179.72654 * 6 5 4 8 8 C 1.50703 * 109.47064 * 269.72702 * 7 6 5 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 H 1.08990 * 109.47170 * 54.99738 * 12 11 10 14 14 C 1.53005 * 109.46867 * 294.99527 * 12 11 10 15 15 C 1.53002 * 109.46776 * 174.99842 * 12 11 10 16 16 N 1.46506 * 109.46916 * 184.99371 * 15 12 11 17 17 C 1.36935 * 119.99911 * 179.97438 * 16 15 12 18 18 H 1.07999 * 120.00226 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99846 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00275 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00062 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46963 * 89.99503 * 21 19 17 23 23 H 1.48492 * 109.47321 * 209.99941 * 21 19 17 24 24 H 1.48508 * 109.46965 * 329.99839 * 21 19 17 25 25 C 1.38242 * 120.14529 * 359.45179 * 6 5 4 26 26 C 1.38561 * 119.99932 * 0.27816 * 25 6 5 27 27 O 1.35994 * 120.07398 * 179.97438 * 26 25 6 28 28 C 1.42904 * 116.99641 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47418 * 299.99765 * 1 2 3 30 30 H 1.08993 * 109.47363 * 60.00715 * 1 2 3 31 31 H 1.09009 * 109.46773 * 179.97438 * 1 2 3 32 32 H 1.08004 * 120.00385 * 0.02562 * 4 3 2 33 33 H 1.08006 * 119.93011 * 180.29799 * 5 4 3 34 34 H 1.09002 * 109.47060 * 149.72738 * 7 6 5 35 35 H 1.09001 * 109.47380 * 29.72651 * 7 6 5 36 36 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 38 38 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 39 39 H 1.09001 * 109.47099 * 60.00379 * 14 12 11 40 40 H 1.09004 * 109.46908 * 180.02562 * 14 12 11 41 41 H 1.09000 * 109.47443 * 300.00098 * 14 12 11 42 42 H 1.08993 * 109.47416 * 304.99509 * 15 12 11 43 43 H 1.09001 * 109.46966 * 65.00241 * 15 12 11 44 44 H 0.96999 * 119.99735 * 0.02562 * 16 15 12 45 45 H 0.96997 * 120.00544 * 179.97438 * 20 19 17 46 46 H 1.08003 * 120.00010 * 180.24830 * 25 6 5 47 47 H 1.09002 * 109.46825 * 299.99835 * 28 27 26 48 48 H 1.08991 * 109.47298 * 60.00304 * 28 27 26 49 49 H 1.09001 * 109.46849 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9221 3.6058 0.0067 6 6 3.3027 3.6800 0.0009 7 6 3.9833 5.0246 0.0015 8 6 4.2101 5.4733 -1.4192 9 8 3.8537 4.7708 -2.3413 10 7 4.8090 6.6555 -1.6650 11 6 5.0289 7.0919 -3.0461 12 6 5.7212 8.4564 -3.0455 13 1 6.6366 8.3991 -2.4568 14 6 4.7864 9.5022 -2.4345 15 6 6.0630 8.8553 -4.4825 16 7 6.8306 10.1032 -4.4734 17 6 7.2512 10.6569 -5.6530 18 1 7.0167 10.1741 -6.5902 19 6 7.9789 11.8390 -5.6443 20 7 8.2643 12.4278 -4.5023 21 14 8.5533 12.5941 -7.2535 22 1 7.5154 13.5273 -7.7606 23 1 9.8192 13.3368 -7.0278 24 1 8.7818 11.5182 -8.2514 25 6 4.0601 2.5235 0.0004 26 6 3.4359 1.2865 -0.0001 27 8 4.1795 0.1479 -0.0011 28 6 5.6003 0.3011 -0.0021 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 0.2144 2.3196 0.0014 33 1 1.3339 4.5115 0.0120 34 1 4.9415 4.9466 0.5152 35 1 3.3534 5.7505 0.5156 36 1 5.0937 7.2175 -0.9275 37 1 4.0705 7.1705 -3.5594 38 1 5.6583 6.3658 -3.5607 39 1 4.5428 9.2180 -1.4108 40 1 5.2794 10.4744 -2.4345 41 1 3.8708 9.5595 -3.0233 42 1 6.6559 8.0675 -4.9471 43 1 5.1426 8.9992 -5.0484 44 1 7.0415 10.5367 -3.6316 45 1 8.7731 13.2535 -4.4962 46 1 5.1384 2.5843 0.0000 47 1 5.9058 0.8512 -0.8922 48 1 5.9072 0.8504 0.8878 49 1 6.0716 -0.6818 -0.0033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268011908.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:26 Heat of formation + Delta-G solvation = -82.001599 kcal Electronic energy + Delta-G solvation = -28039.161219 eV Core-core repulsion = 23967.266061 eV Total energy + Delta-G solvation = -4071.895158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90650 -39.73971 -38.69188 -37.43260 -36.66568 -34.35135 -32.73477 -32.16222 -30.60261 -30.08556 -28.74538 -27.52910 -27.01251 -26.13756 -25.01231 -22.63331 -22.46242 -21.78038 -20.56125 -19.81432 -18.70140 -17.46119 -17.30767 -17.05586 -16.76753 -16.29928 -16.03347 -15.53067 -15.50897 -15.03532 -14.78495 -14.70320 -14.45105 -14.29326 -13.87794 -13.63243 -13.50813 -13.06912 -12.82832 -12.76415 -12.52143 -12.40474 -12.31705 -12.07958 -11.92324 -11.48035 -11.46500 -11.39600 -11.18507 -11.07177 -10.92107 -10.70921 -10.58720 -10.43156 -10.09049 -9.87112 -9.67245 -9.03164 -8.94699 -8.88731 -8.01174 -6.93409 -5.78217 -3.06559 1.01897 1.16666 2.60571 2.97997 3.01335 3.11703 3.43179 3.48473 3.50026 3.55976 4.33291 4.46177 4.58422 4.66806 4.74570 4.80218 4.84329 4.85171 4.91832 4.94486 5.07425 5.07741 5.15546 5.19241 5.21282 5.23240 5.24582 5.37285 5.43975 5.56837 5.80321 5.82860 5.95282 5.97576 5.98887 6.09968 6.23217 6.29116 6.37770 6.39491 6.48333 6.63767 6.76095 6.76995 6.85541 7.30994 7.47975 7.69648 8.20285 8.40934 9.52291 10.09477 10.44362 11.44753 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.025024 B = 0.001660 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.660143 B =16859.997139 C =17199.355117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.097 3.903 4 C -0.170 4.170 5 C -0.101 4.101 6 C -0.060 4.060 7 C -0.101 4.101 8 C 0.510 3.490 9 O -0.533 6.533 10 N -0.727 5.727 11 C 0.127 3.873 12 C -0.110 4.110 13 H 0.076 0.924 14 C -0.141 4.141 15 C 0.160 3.840 16 N -0.731 5.731 17 C -0.239 4.239 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.156 4.156 26 C 0.100 3.900 27 O -0.308 6.308 28 C 0.026 3.974 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.400 0.600 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.021 0.979 43 H 0.022 0.978 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.134 0.866 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.408 -22.905 16.588 31.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.051 3.949 4 C -0.189 4.189 5 C -0.119 4.119 6 C -0.061 4.061 7 C -0.140 4.140 8 C 0.295 3.705 9 O -0.409 6.409 10 N -0.379 5.379 11 C 0.003 3.997 12 C -0.129 4.129 13 H 0.094 0.906 14 C -0.199 4.199 15 C 0.032 3.968 16 N -0.375 5.375 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.175 4.175 26 C 0.055 3.945 27 O -0.222 6.222 28 C -0.070 4.070 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.152 0.848 33 H 0.144 0.856 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.235 0.765 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.038 0.962 43 H 0.040 0.960 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.151 0.849 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.604 -23.784 15.718 31.588 hybrid contribution 0.578 1.321 -0.317 1.476 sum -13.026 -22.463 15.401 30.191 Atomic orbital electron populations 1.23059 0.78667 1.03899 1.01245 1.86163 1.20938 1.25996 1.89124 1.18232 0.89129 0.85192 1.02324 1.20992 0.99869 0.91393 1.06649 1.20679 0.93639 0.97171 1.00435 1.18941 0.93253 0.93146 1.00732 1.20645 1.02823 0.95431 0.95147 1.20495 0.77727 0.81138 0.91120 1.90738 1.50064 1.53940 1.46194 1.46089 1.61436 1.20745 1.09613 1.21404 1.00707 0.95673 0.81902 1.21548 0.98731 0.93039 0.99601 0.90559 1.21791 0.99401 0.99848 0.98822 1.20580 0.94758 0.89737 0.91743 1.42334 1.64382 1.24079 1.06721 1.19246 1.27420 1.03954 0.86412 0.91151 1.24731 1.01270 0.98145 0.96865 1.69651 1.44720 1.20119 1.23835 0.86179 0.77924 0.79083 0.82948 1.21728 1.21777 1.20760 1.20867 1.00176 0.90586 1.05869 1.18146 0.88225 0.85991 1.02154 1.86157 1.18688 1.28228 1.89115 1.23078 0.78619 1.03866 1.01387 0.92757 0.92664 0.88286 0.84755 0.85610 0.87968 0.87747 0.76533 0.91422 0.91466 0.93889 0.91166 0.92850 0.96153 0.96014 0.78219 0.93541 0.84863 0.92524 0.92726 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.43 10.28 -34.25 -0.35 -3.78 16 3 C 0.10 1.11 6.70 -39.12 -0.26 0.85 16 4 C -0.17 -1.65 9.04 -39.46 -0.36 -2.01 16 5 C -0.10 -0.99 9.69 -39.57 -0.38 -1.37 16 6 C -0.06 -0.61 4.37 -104.61 -0.46 -1.07 16 7 C -0.10 -0.81 5.83 -29.03 -0.17 -0.98 16 8 C 0.51 6.03 7.82 -10.98 -0.09 5.95 16 9 O -0.53 -8.71 16.03 5.56 0.09 -8.62 16 10 N -0.73 -7.89 5.28 -60.29 -0.32 -8.21 16 11 C 0.13 1.71 5.06 -4.04 -0.02 1.69 16 12 C -0.11 -1.65 2.46 -90.62 -0.22 -1.87 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.14 -2.02 8.94 37.16 0.33 -1.69 16 15 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 16 N -0.73 -18.17 5.33 -59.91 -0.32 -18.49 16 17 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 21 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C -0.16 -1.65 8.69 -39.46 -0.34 -1.99 16 26 C 0.10 1.19 6.70 -39.12 -0.26 0.93 16 27 O -0.31 -3.58 10.28 -34.22 -0.35 -3.93 16 28 C 0.03 0.19 9.81 101.05 0.99 1.18 16 29 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 31 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.13 0.95 6.30 -52.48 -0.33 0.62 16 33 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.10 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.10 0.60 8.08 -51.93 -0.42 0.18 16 36 H 0.40 3.32 7.65 -40.82 -0.31 3.01 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 40 H 0.07 1.19 7.18 -51.93 -0.37 0.81 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.38 9.90 6.85 -40.82 -0.28 9.62 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.13 1.16 6.30 -52.48 -0.33 0.83 16 47 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 48 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 49 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 404.83 15.07 6.10 6.10 Total: -1.00 -35.89 404.83 -7.75 -43.64 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.78 Total: 6.60 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -0.52 Total: -3.43 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.09 Total: -53.95 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.61 Total: -16.33 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.89 -7.75 -43.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268011908.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.367 kcal (2) G-P(sol) polarization free energy of solvation -35.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds