Wall clock time and date at job start Sat Apr 11 2020 04:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46710 * 2 1 4 4 C 1.36935 * 120.00211 * 275.31287 * 3 2 1 5 5 H 1.07999 * 120.00036 * 37.57963 * 4 3 2 6 6 C 1.38819 * 119.99955 * 217.58067 * 4 3 2 7 7 N 1.31619 * 120.00140 * 21.42419 * 6 4 3 8 8 Si 1.86802 * 120.00098 * 201.42132 * 6 4 3 9 9 H 1.48496 * 109.46966 * 59.99865 * 8 6 4 10 10 H 1.48493 * 109.47231 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46951 * 300.00304 * 8 6 4 12 12 C 1.46501 * 119.99907 * 95.31548 * 3 2 1 13 13 C 1.53006 * 109.46977 * 269.99798 * 12 3 2 14 14 N 1.46501 * 109.46977 * 179.97438 * 13 12 3 15 15 C 1.34779 * 119.99575 * 179.72062 * 14 13 12 16 16 O 1.21278 * 120.00232 * 0.27990 * 15 14 13 17 17 C 1.50697 * 119.99581 * 180.27414 * 15 14 13 18 18 H 1.09004 * 109.47439 * 305.00259 * 17 15 14 19 19 O 1.42908 * 109.47056 * 185.00500 * 17 15 14 20 20 C 1.42896 * 114.00082 * 149.99937 * 19 17 15 21 21 C 1.50703 * 109.47483 * 65.00391 * 17 15 14 22 22 C 1.38290 * 119.97199 * 84.72183 * 21 17 15 23 23 C 1.38237 * 120.11147 * 179.73052 * 22 21 17 24 24 C 1.38166 * 120.05402 * 0.54621 * 23 22 21 25 25 C 1.38710 * 119.94388 * 359.72947 * 24 23 22 26 26 O 1.35905 * 120.05199 * 179.97438 * 25 24 23 27 27 C 1.42901 * 117.00272 * 0.02562 * 26 25 24 28 28 C 1.38124 * 119.97044 * 265.00241 * 21 17 15 29 29 H 1.08995 * 109.47506 * 60.00127 * 1 2 3 30 30 H 1.09003 * 109.46957 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46840 * 299.99600 * 1 2 3 32 32 H 1.09001 * 109.46840 * 240.00400 * 2 1 3 33 33 H 1.08995 * 109.47506 * 119.99873 * 2 1 3 34 34 H 0.96994 * 120.00046 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.47143 * 150.00027 * 12 3 2 36 36 H 1.08994 * 109.47515 * 29.99706 * 12 3 2 37 37 H 1.08992 * 109.47285 * 59.99915 * 13 12 3 38 38 H 1.09003 * 109.46920 * 299.99960 * 13 12 3 39 39 H 0.96994 * 120.00269 * 359.97438 * 14 13 12 40 40 H 1.09000 * 109.47508 * 300.00220 * 20 19 17 41 41 H 1.09005 * 109.46980 * 59.99742 * 20 19 17 42 42 H 1.08994 * 109.46978 * 179.97438 * 20 19 17 43 43 H 1.08008 * 119.93933 * 359.97438 * 22 21 17 44 44 H 1.08004 * 119.97528 * 180.25394 * 23 22 21 45 45 H 1.08004 * 120.02959 * 179.70458 * 24 23 22 46 46 H 1.08995 * 109.47060 * 180.02562 * 27 26 25 47 47 H 1.09002 * 109.46639 * 300.00086 * 27 26 25 48 48 H 1.08996 * 109.47038 * 59.99745 * 27 26 25 49 49 H 1.07999 * 120.02888 * 0.02562 * 28 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1429 2.0634 -1.1808 5 1 1.4103 1.9279 -1.9626 6 6 3.2110 2.9291 -1.3728 7 7 4.3025 2.7982 -0.6491 8 14 3.0992 4.2797 -2.6585 9 1 1.9625 5.1786 -2.3344 10 1 4.3620 5.0609 -2.6669 11 1 2.8842 3.6727 -3.9966 12 6 2.3732 2.0327 1.2633 13 6 1.1425 2.7382 1.8367 14 7 1.4973 3.3891 3.1003 15 6 0.5661 4.0807 3.7866 16 8 -0.5667 4.1600 3.3608 17 6 0.9326 4.7555 5.0833 18 1 1.3665 4.0231 5.7642 19 8 -0.2397 5.3196 5.6747 20 6 -0.2039 5.3699 7.1023 21 6 1.9355 5.8479 4.8153 22 6 1.5028 7.1039 4.4310 23 6 2.4200 8.1097 4.1898 24 6 3.7723 7.8591 4.3213 25 6 4.2091 6.5985 4.7011 26 8 5.5389 6.3495 4.8306 27 6 6.4312 7.4324 4.5604 28 6 3.2864 5.5923 4.9481 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.0489 3.4029 -0.7835 35 1 3.1616 2.7641 1.0859 36 1 2.7255 1.2834 1.9721 37 1 0.3541 2.0068 2.0140 38 1 0.7902 3.4876 1.1278 39 1 2.4032 3.3254 3.4411 40 1 -0.0977 4.3602 7.4989 41 1 0.6425 5.9772 7.4234 42 1 -1.1288 5.8110 7.4736 43 1 0.4462 7.3004 4.3229 44 1 2.0794 9.0909 3.8937 45 1 4.4887 8.6439 4.1281 46 1 7.4596 7.0994 4.7002 47 1 6.2948 7.7676 3.5322 48 1 6.2197 8.2562 5.2422 49 1 3.6240 4.6099 5.2435 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663406828.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:31 Heat of formation + Delta-G solvation = -68.393256 kcal Electronic energy + Delta-G solvation = -29930.900334 eV Core-core repulsion = 25859.595279 eV Total energy + Delta-G solvation = -4071.305056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.53246 -39.50118 -37.87204 -36.97781 -36.21141 -34.05650 -32.12860 -31.86403 -30.52661 -29.62760 -28.21775 -27.40438 -27.23947 -25.63024 -24.13324 -22.71747 -22.08948 -21.39105 -20.39431 -19.97186 -18.23244 -17.28584 -16.93238 -16.45579 -16.21607 -15.87943 -15.83112 -15.68565 -15.05938 -15.01260 -14.49957 -14.33154 -13.98388 -13.80555 -13.66408 -13.56480 -13.18536 -12.99399 -12.66179 -12.43740 -12.36365 -12.12114 -11.97399 -11.75639 -11.50762 -11.40090 -11.23572 -11.09990 -11.03450 -10.73631 -10.61823 -10.51451 -10.13621 -10.05915 -9.85873 -9.79577 -9.52188 -8.87854 -8.54684 -8.42016 -8.27390 -6.60662 -5.81796 -3.40395 1.10434 1.38042 2.83557 3.06435 3.20821 3.37631 3.42316 3.47218 3.60263 4.15974 4.47785 4.49343 4.65785 4.84305 4.93031 4.95364 5.00203 5.02511 5.22605 5.23805 5.28746 5.30395 5.31564 5.37848 5.46634 5.52664 5.56637 5.83634 6.01497 6.13137 6.16244 6.19303 6.32956 6.40400 6.42118 6.44138 6.52965 6.60141 6.70666 6.85532 6.93183 6.95252 7.06113 7.18726 7.27008 7.57135 7.81877 7.92981 8.49662 8.58646 9.16363 9.78441 10.36400 11.18251 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008834 B = 0.004097 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3168.937992 B = 6832.333491 C = 8748.146442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.262 4.262 5 H 0.061 0.939 6 C 0.016 3.984 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.138 3.862 13 C 0.099 3.901 14 N -0.714 5.714 15 C 0.515 3.485 16 O -0.523 6.523 17 C 0.115 3.885 18 H 0.094 0.906 19 O -0.350 6.350 20 C 0.027 3.973 21 C -0.076 4.076 22 C -0.123 4.123 23 C -0.082 4.082 24 C -0.202 4.202 25 C 0.129 3.871 26 O -0.315 6.315 27 C 0.028 3.972 28 C -0.140 4.140 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.255 0.745 35 H 0.099 0.901 36 H 0.029 0.971 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.397 0.603 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.100 0.900 47 H 0.057 0.943 48 H 0.053 0.947 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.147 8.211 16.696 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.392 4.392 5 H 0.079 0.921 6 C -0.185 4.185 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.010 3.990 13 C -0.026 4.026 14 N -0.366 5.366 15 C 0.298 3.702 16 O -0.399 6.399 17 C 0.053 3.947 18 H 0.112 0.888 19 O -0.267 6.267 20 C -0.069 4.069 21 C -0.077 4.077 22 C -0.141 4.141 23 C -0.100 4.100 24 C -0.221 4.221 25 C 0.084 3.916 26 O -0.228 6.228 27 C -0.067 4.067 28 C -0.158 4.158 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.230 0.770 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.109 0.891 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.118 0.882 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.442 8.204 16.280 18.236 hybrid contribution 0.692 1.049 -0.386 1.315 sum 1.134 9.253 15.894 18.426 Atomic orbital electron populations 1.22394 0.99922 0.99065 1.01425 1.20876 0.91757 0.86965 0.98873 1.43596 1.76058 1.08261 1.02057 1.18972 1.04784 1.21436 0.93991 0.92139 1.25163 0.94148 1.01112 0.98066 1.69979 1.03114 1.37279 1.42436 0.86494 0.76980 0.82439 0.81681 1.20756 1.21612 1.20585 1.21056 0.94552 0.96939 0.86418 1.22495 1.01145 0.96498 0.82429 1.46027 1.12953 1.52972 1.24647 1.19975 0.85809 0.79256 0.85188 1.90705 1.20278 1.60196 1.68686 1.20771 0.85914 0.93110 0.94888 0.88800 1.88058 1.36881 1.82182 1.19568 1.22897 1.02598 1.00675 0.80750 1.19805 0.92635 0.95333 0.99891 1.20932 1.00539 0.92367 1.00275 1.20942 0.92201 0.99238 0.97582 1.21284 0.97225 0.96478 1.07111 1.18861 0.83193 0.93456 0.96111 1.86081 1.13585 1.38649 1.84526 1.23056 0.93208 0.89621 1.00832 1.20176 0.90698 0.99046 1.05908 0.93113 0.94466 0.93648 0.93586 0.94741 0.93490 0.88357 0.95301 0.92875 0.91694 0.76997 0.93754 0.93776 0.89143 0.85060 0.85588 0.85460 0.88175 0.92469 0.92842 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 10.21 37.16 0.38 -2.79 16 2 C 0.14 2.99 6.44 -4.04 -0.03 2.96 16 3 N -0.58 -14.22 2.43 -173.24 -0.42 -14.64 16 4 C -0.26 -7.11 9.45 -15.06 -0.14 -7.26 16 5 H 0.06 1.65 7.92 -52.49 -0.42 1.24 16 6 C 0.02 0.43 4.95 -17.43 -0.09 0.34 16 7 N -0.89 -24.90 11.47 55.49 0.64 -24.26 16 8 Si 0.89 21.67 29.60 -169.99 -5.03 16.64 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.14 3.11 5.45 -4.04 -0.02 3.09 16 13 C 0.10 2.07 6.00 -4.04 -0.02 2.05 16 14 N -0.71 -12.51 5.51 -60.29 -0.33 -12.84 16 15 C 0.51 9.20 7.17 -10.99 -0.08 9.12 16 16 O -0.52 -11.55 16.51 -14.30 -0.24 -11.79 16 17 C 0.12 1.59 2.72 -29.03 -0.08 1.51 16 18 H 0.09 1.01 7.70 -51.93 -0.40 0.61 16 19 O -0.35 -4.95 9.04 -55.09 -0.50 -5.45 16 20 C 0.03 0.26 10.81 101.05 1.09 1.35 16 21 C -0.08 -1.02 4.90 -104.64 -0.51 -1.53 16 22 C -0.12 -1.66 9.35 -39.56 -0.37 -2.03 16 23 C -0.08 -0.97 10.04 -39.61 -0.40 -1.37 16 24 C -0.20 -2.37 9.04 -39.43 -0.36 -2.73 16 25 C 0.13 1.66 6.69 -39.22 -0.26 1.40 16 26 O -0.32 -3.89 10.50 -19.44 -0.20 -4.10 16 27 C 0.03 0.24 9.81 101.05 0.99 1.23 16 28 C -0.14 -1.78 9.45 -39.43 -0.37 -2.15 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.86 6.64 -51.93 -0.34 0.52 16 32 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.10 2.50 5.52 -51.93 -0.29 2.21 16 36 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16 37 H 0.05 1.12 6.64 -51.93 -0.34 0.78 16 38 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.40 6.01 8.30 -40.82 -0.34 5.67 16 40 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 41 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.13 1.82 7.63 -52.48 -0.40 1.42 16 44 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 45 H 0.13 1.19 6.30 -52.48 -0.33 0.86 16 46 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 48 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 49 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 405.97 15.07 6.12 6.12 Total: -1.00 -33.30 405.97 -8.07 -41.37 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.83 Total: 5.75 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -0.27 Total: 3.19 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.12 Total: -51.74 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.94 Total: -21.33 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.30 -8.07 -41.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663406828.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.024 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds