Wall clock time and date at job start Sat Apr 11 2020 04:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47438 * 2 1 4 4 C 1.53001 * 109.47357 * 120.00053 * 2 1 3 5 5 N 1.46497 * 109.47211 * 173.58178 * 4 2 1 6 6 C 1.36934 * 119.99986 * 185.27372 * 5 4 2 7 7 H 1.08003 * 120.00328 * 5.23330 * 6 5 4 8 8 C 1.38810 * 120.00232 * 185.22985 * 6 5 4 9 9 N 1.31624 * 120.00370 * 184.76798 * 8 6 5 10 10 Si 1.86801 * 119.99819 * 4.76386 * 8 6 5 11 11 H 1.48506 * 109.46777 * 93.95147 * 10 8 6 12 12 H 1.48500 * 109.47235 * 213.94941 * 10 8 6 13 13 H 1.48499 * 109.47303 * 333.95078 * 10 8 6 14 14 N 1.46503 * 109.46948 * 240.00051 * 2 1 3 15 15 C 1.46504 * 119.99895 * 301.94974 * 14 2 1 16 16 C 1.34773 * 120.00228 * 121.95568 * 14 2 1 17 17 O 1.21282 * 119.99900 * 5.12698 * 16 14 2 18 18 C 1.50695 * 120.00040 * 185.13484 * 16 14 2 19 19 H 1.08998 * 109.47045 * 0.53860 * 18 16 14 20 20 C 1.52999 * 109.47055 * 240.53932 * 18 16 14 21 21 C 1.53004 * 109.47383 * 299.99913 * 20 18 16 22 22 C 1.53002 * 109.46977 * 300.00136 * 21 20 18 23 23 C 1.52999 * 109.47175 * 59.99737 * 22 21 20 24 24 C 1.53002 * 109.47188 * 120.53868 * 18 16 14 25 25 H 1.09000 * 109.46856 * 179.97438 * 24 18 16 26 26 C 1.52999 * 109.47175 * 299.99991 * 24 18 16 27 27 F 1.39900 * 109.46752 * 181.39649 * 26 24 18 28 28 F 1.39902 * 109.46888 * 301.39267 * 26 24 18 29 29 F 1.39891 * 109.47040 * 61.39275 * 26 24 18 30 30 H 1.08996 * 109.47345 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47071 * 300.00106 * 1 2 3 32 32 H 1.09003 * 109.47259 * 59.99501 * 1 2 3 33 33 H 1.09009 * 109.46689 * 293.57717 * 4 2 1 34 34 H 1.09000 * 109.47487 * 53.57724 * 4 2 1 35 35 H 0.97001 * 120.00395 * 5.27594 * 5 4 2 36 36 H 0.96990 * 120.00203 * 180.02562 * 9 8 6 37 37 H 1.08993 * 109.47272 * 264.82963 * 15 14 2 38 38 H 1.08999 * 109.46505 * 24.82616 * 15 14 2 39 39 H 1.08994 * 109.47024 * 144.82259 * 15 14 2 40 40 H 1.09003 * 109.47596 * 180.02562 * 20 18 16 41 41 H 1.08998 * 109.47418 * 59.99650 * 20 18 16 42 42 H 1.09000 * 109.47032 * 59.99666 * 21 20 18 43 43 H 1.08991 * 109.47273 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.47134 * 179.97438 * 22 21 20 45 45 H 1.08995 * 109.47299 * 299.99770 * 22 21 20 46 46 H 1.09000 * 109.47309 * 60.00178 * 23 22 21 47 47 H 1.08998 * 109.47418 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4968 -0.8564 1.1745 6 6 4.1685 -1.5673 2.1329 7 1 3.6188 -2.0987 2.8957 8 6 5.5561 -1.6051 2.1240 9 7 6.1994 -2.3630 2.9867 10 14 6.5105 -0.5804 0.8876 11 1 6.8810 0.7194 1.5031 12 1 7.7419 -1.3076 0.4876 13 1 5.6673 -0.3383 -0.3105 14 7 2.0182 -0.6906 -1.1962 15 6 1.6294 -2.0802 -1.4498 16 6 2.8253 -0.0478 -2.0633 17 8 3.2225 1.0693 -1.8079 18 6 3.2339 -0.7169 -3.3502 19 1 2.7750 -1.7038 -3.4082 20 6 4.7567 -0.8593 -3.3898 21 6 5.4009 0.5261 -3.3085 22 6 4.9370 1.3747 -4.4941 23 6 3.4142 1.5171 -4.4545 24 6 2.7700 0.1317 -4.5359 25 1 3.0660 -0.3521 -5.4667 26 6 1.2472 0.2741 -4.4963 27 9 0.8202 1.0232 -5.5980 28 9 0.6589 -0.9945 -4.5387 29 9 0.8702 0.9238 -3.3161 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.7735 -0.1453 2.1355 34 1 1.5859 -1.7104 1.3086 35 1 3.9856 -0.4423 0.4462 36 1 7.1689 -2.3892 2.9807 37 1 2.4015 -2.7488 -1.0693 38 1 0.6859 -2.2910 -0.9464 39 1 1.5113 -2.2344 -2.5223 40 1 5.0524 -1.3429 -4.3209 41 1 5.0872 -1.4637 -2.5452 42 1 5.1053 1.0101 -2.3776 43 1 6.4857 0.4247 -3.3371 44 1 5.3956 2.3618 -4.4359 45 1 5.2325 0.8907 -5.4250 46 1 3.1186 2.0011 -3.5237 47 1 3.0836 2.1212 -5.2994 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732425189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:05 Heat of formation + Delta-G solvation = -178.070886 kcal Electronic energy + Delta-G solvation = -33421.671475 eV Core-core repulsion = 28803.753700 eV Total energy + Delta-G solvation = -4617.917775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -50.26078 -47.76275 -47.67472 -40.73716 -37.99038 -36.00596 -34.20665 -32.43206 -31.88841 -31.00073 -30.23901 -26.80797 -26.07157 -25.80136 -23.83484 -22.29669 -22.04949 -21.33466 -20.10314 -18.83237 -18.44683 -18.37328 -17.63350 -17.54205 -17.17330 -15.74198 -15.52848 -15.00064 -14.66491 -14.50134 -14.49066 -14.24003 -14.14918 -13.95322 -13.89491 -13.78669 -13.69638 -13.58044 -12.91561 -12.87415 -12.79830 -12.57379 -12.37101 -12.32873 -12.31541 -12.08316 -11.90534 -11.80456 -11.73548 -11.24233 -10.96037 -10.87030 -10.73983 -10.47868 -10.41820 -10.26715 -9.99425 -9.58079 -9.11567 -8.87113 -8.30463 -7.17946 -5.75348 -3.09530 2.58178 2.74996 3.13695 3.39724 3.47307 3.49684 3.60485 3.80122 3.87497 4.43483 4.53337 4.62041 4.62688 4.90495 4.99190 5.01683 5.10740 5.11790 5.23491 5.25535 5.30614 5.37390 5.48284 5.53869 5.57030 5.67644 5.75735 5.79696 5.87578 5.89143 5.99513 6.01603 6.08008 6.11458 6.20999 6.27314 6.28486 6.41067 6.58441 6.68049 6.90787 7.62054 8.02982 8.39696 8.44523 9.25748 9.98176 10.19903 11.42805 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.005455 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.919705 B = 5131.647069 C = 6364.634891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.099 0.901 4 C 0.148 3.852 5 N -0.752 5.752 6 C -0.241 4.241 7 H 0.088 0.912 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.881 3.119 11 H -0.286 1.286 12 H -0.293 1.293 13 H -0.270 1.270 14 N -0.592 5.592 15 C 0.073 3.927 16 C 0.520 3.480 17 O -0.525 6.525 18 C -0.113 4.113 19 H 0.103 0.897 20 C -0.101 4.101 21 C -0.140 4.140 22 C -0.102 4.102 23 C -0.132 4.132 24 C -0.115 4.115 25 H 0.119 0.881 26 C 0.448 3.552 27 F -0.184 7.184 28 F -0.185 7.185 29 F -0.170 7.170 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.032 0.968 34 H 0.031 0.969 35 H 0.366 0.634 36 H 0.258 0.742 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.056 0.944 46 H 0.109 0.891 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.434 3.950 -19.290 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 H 0.117 0.883 4 C 0.019 3.981 5 N -0.398 5.398 6 C -0.371 4.371 7 H 0.106 0.894 8 C -0.191 4.191 9 N -0.583 5.583 10 Si 0.711 3.289 11 H -0.213 1.213 12 H -0.220 1.220 13 H -0.196 1.196 14 N -0.325 5.325 15 C -0.070 4.070 16 C 0.308 3.692 17 O -0.403 6.403 18 C -0.134 4.134 19 H 0.121 0.879 20 C -0.139 4.139 21 C -0.177 4.177 22 C -0.139 4.139 23 C -0.169 4.169 24 C -0.134 4.134 25 H 0.137 0.863 26 C 0.394 3.606 27 F -0.166 7.166 28 F -0.166 7.166 29 F -0.151 7.151 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.200 0.800 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.127 0.873 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.234 4.403 -18.930 21.965 hybrid contribution 0.449 0.358 -0.819 1.000 sum -9.785 4.762 -19.748 22.548 Atomic orbital electron populations 1.22058 0.94917 1.02186 1.02231 1.21421 0.93547 0.98311 0.84554 0.88269 1.20990 0.85999 0.97376 0.93687 1.42716 1.01697 1.64977 1.30432 1.19041 0.89643 1.22502 1.05871 0.89435 1.24665 0.96168 0.99774 0.98473 1.69713 1.07394 1.42474 1.38684 0.86585 0.79748 0.80496 0.82030 1.21319 1.21989 1.19641 1.47675 1.48392 1.13290 1.23107 1.21858 1.01751 0.82567 1.00815 1.20137 0.78093 0.86145 0.84809 1.90538 1.53734 1.19656 1.76362 1.21460 1.00089 0.99927 0.91954 0.87929 1.21379 0.90510 0.98890 1.03085 1.21855 0.99552 0.95149 1.01163 1.21333 0.93976 1.00461 0.98176 1.21907 0.96760 0.93073 1.05204 1.22392 0.87633 1.01689 1.01723 0.86317 1.20720 0.92511 0.73647 0.73767 1.93163 1.91846 1.77126 1.54456 1.93161 1.86665 1.40638 1.96150 1.93225 1.92810 1.81556 1.47553 0.92259 0.91297 0.92449 0.95064 0.95140 0.79981 0.93182 0.91474 0.90614 0.91759 0.90784 0.90412 0.88396 0.92028 0.91399 0.92486 0.87333 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.15 37.15 0.34 -1.60 16 2 C 0.12 2.00 2.79 -67.93 -0.19 1.82 16 3 H 0.10 1.79 6.92 -51.93 -0.36 1.43 16 4 C 0.15 2.85 5.58 -4.04 -0.02 2.82 16 5 N -0.75 -18.09 5.16 -59.91 -0.31 -18.40 16 6 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 7 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 8 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 9 N -0.93 -29.57 13.97 55.49 0.78 -28.80 16 10 Si 0.88 22.76 28.00 -169.99 -4.76 18.00 16 11 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 12 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 13 H -0.27 -6.58 6.17 56.52 0.35 -6.23 16 14 N -0.59 -9.08 2.22 -173.94 -0.39 -9.46 16 15 C 0.07 0.93 9.29 59.85 0.56 1.49 16 16 C 0.52 8.20 3.54 -10.99 -0.04 8.16 16 17 O -0.53 -9.58 10.55 5.56 0.06 -9.53 16 18 C -0.11 -1.41 2.15 -91.77 -0.20 -1.60 16 19 H 0.10 1.11 5.02 -51.93 -0.26 0.85 16 20 C -0.10 -1.29 5.44 -26.73 -0.15 -1.43 16 21 C -0.14 -1.93 5.63 -26.73 -0.15 -2.08 16 22 C -0.10 -1.12 5.92 -26.73 -0.16 -1.28 16 23 C -0.13 -1.51 4.66 -26.73 -0.12 -1.64 16 24 C -0.11 -1.23 2.05 -90.62 -0.19 -1.41 16 25 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 26 C 0.45 5.20 2.65 37.16 0.10 5.30 16 27 F -0.18 -2.12 16.85 2.25 0.04 -2.08 16 28 F -0.18 -2.07 16.11 2.25 0.04 -2.03 16 29 F -0.17 -2.34 14.17 2.25 0.03 -2.30 16 30 H 0.06 0.67 6.59 -51.93 -0.34 0.33 16 31 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.03 0.58 7.92 -51.93 -0.41 0.17 16 35 H 0.37 8.94 4.78 -40.82 -0.20 8.75 16 36 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.85 6.33 -51.93 -0.33 0.52 16 39 H 0.06 0.68 5.35 -51.93 -0.28 0.40 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.10 1.70 5.53 -51.93 -0.29 1.42 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.11 1.55 5.12 -51.93 -0.27 1.29 16 47 H 0.07 0.67 7.84 -51.93 -0.41 0.27 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -32.80 361.42 -6.51 -39.31 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.97 Total: 8.28 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -0.47 Total: 1.58 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.08 Total: -56.66 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.06 Total: -9.53 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 0.11 Total: -6.42 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.76 Total: 18.00 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.80 -6.51 -39.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732425189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.758 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds