Wall clock time and date at job start Sat Apr 11 2020 04:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47296 * 2 1 4 4 C 1.52996 * 109.47183 * 240.00002 * 2 1 3 5 5 N 1.46498 * 109.47449 * 185.00117 * 4 2 1 6 6 C 1.36936 * 120.00512 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99472 * 0.02562 * 6 5 4 8 8 C 1.38813 * 120.00221 * 180.02562 * 6 5 4 9 9 N 1.31613 * 119.99736 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99893 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47089 * 90.00329 * 10 8 6 12 12 H 1.48505 * 109.46985 * 210.00286 * 10 8 6 13 13 H 1.48495 * 109.47053 * 330.00349 * 10 8 6 14 14 N 1.46501 * 109.46854 * 119.99985 * 2 1 3 15 15 C 1.46505 * 119.99563 * 60.00223 * 14 2 1 16 16 C 1.34770 * 120.00169 * 239.99449 * 14 2 1 17 17 O 1.21282 * 119.99888 * 0.02562 * 16 14 2 18 18 C 1.50703 * 119.99999 * 179.97438 * 16 14 2 19 19 H 1.08996 * 109.47135 * 38.61124 * 18 16 14 20 20 C 1.53002 * 109.47054 * 278.60810 * 18 16 14 21 21 C 1.52993 * 109.47183 * 300.00013 * 20 18 16 22 22 C 1.53002 * 109.47313 * 299.99984 * 21 20 18 23 23 C 1.52996 * 109.47105 * 60.00197 * 22 21 20 24 24 C 1.53002 * 109.47063 * 158.61058 * 18 16 14 25 25 H 1.09000 * 109.47036 * 180.02562 * 24 18 16 26 26 C 1.53010 * 109.46935 * 300.00040 * 24 18 16 27 27 F 1.39897 * 109.47013 * 65.99667 * 26 24 18 28 28 F 1.39901 * 109.46942 * 185.99521 * 26 24 18 29 29 F 1.39899 * 109.46997 * 305.99569 * 26 24 18 30 30 H 1.09009 * 109.46716 * 59.99486 * 1 2 3 31 31 H 1.08996 * 109.47250 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47093 * 300.00434 * 1 2 3 33 33 H 1.08998 * 109.47251 * 305.00675 * 4 2 1 34 34 H 1.08999 * 109.47308 * 65.00185 * 4 2 1 35 35 H 0.97009 * 119.99637 * 0.02562 * 5 4 2 36 36 H 0.97008 * 119.99815 * 179.97438 * 9 8 6 37 37 H 1.08996 * 109.46882 * 269.99459 * 15 14 2 38 38 H 1.08994 * 109.47059 * 29.99954 * 15 14 2 39 39 H 1.09001 * 109.46567 * 149.99909 * 15 14 2 40 40 H 1.09000 * 109.47224 * 60.00380 * 20 18 16 41 41 H 1.09000 * 109.46685 * 179.97438 * 20 18 16 42 42 H 1.09001 * 109.46915 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.47532 * 60.00246 * 21 20 18 44 44 H 1.09000 * 109.47036 * 300.00566 * 22 21 20 45 45 H 1.08998 * 109.47603 * 180.02562 * 22 21 20 46 46 H 1.08999 * 109.47679 * 180.02562 * 23 22 21 47 47 H 1.08998 * 109.47235 * 59.99898 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1839 -1.4379 -2.2072 7 1 3.6469 -1.8423 -3.0524 8 6 5.5673 -1.5380 -2.1513 9 7 6.2245 -2.1254 -3.1287 10 14 6.4961 -0.8379 -0.6896 11 1 6.6267 -1.8807 0.3595 12 1 7.8473 -0.4015 -1.1247 13 1 5.7528 0.3251 -0.1418 14 7 2.0183 -0.6906 1.1962 15 6 1.6643 -2.0933 1.4279 16 6 2.7932 -0.0357 2.0833 17 8 3.0859 1.1255 1.8916 18 6 3.2950 -0.7460 3.3141 19 1 3.5608 -1.7718 3.0587 20 6 2.1984 -0.7539 4.3811 21 6 1.8253 0.6859 4.7396 22 6 3.0583 1.4125 5.2808 23 6 4.1548 1.4205 4.2139 24 6 4.5279 -0.0194 3.8553 25 1 4.8911 -0.5334 4.7452 26 6 5.6245 -0.0115 2.7882 27 9 5.2104 0.7638 1.6998 28 9 6.7961 0.5302 3.3277 29 9 5.8695 -1.3211 2.3616 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6053 -1.7197 -1.2952 34 1 1.7517 -0.1583 -2.1369 35 1 3.9824 -0.4628 -0.4315 36 1 7.1913 -2.1950 -3.0899 37 1 0.7375 -2.1444 1.9992 38 1 1.5294 -2.5968 0.4707 39 1 2.4628 -2.5819 1.9863 40 1 1.3200 -1.2716 3.9956 41 1 2.5612 -1.2681 5.2711 42 1 1.0445 0.6802 5.5001 43 1 1.4624 1.1997 3.8495 44 1 3.4212 0.8987 6.1710 45 1 2.7924 2.4382 5.5367 46 1 5.0333 1.9377 4.5995 47 1 3.7919 1.9342 3.3237 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732425190.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:10 Heat of formation + Delta-G solvation = -162.088506 kcal Electronic energy + Delta-G solvation = -33897.834257 eV Core-core repulsion = 29280.609530 eV Total energy + Delta-G solvation = -4617.224727 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.81941 -47.33839 -47.12900 -40.78817 -38.00286 -36.14522 -34.19596 -32.40231 -31.97278 -30.94999 -30.22543 -26.82446 -25.98798 -25.74074 -23.85058 -22.30892 -21.94642 -21.42553 -20.07659 -18.79560 -18.04356 -17.97608 -17.62465 -17.45302 -17.05778 -15.71211 -15.57081 -15.15032 -14.55198 -14.37887 -14.31762 -14.15943 -13.94635 -13.76198 -13.67237 -13.63946 -13.42617 -13.31456 -12.95837 -12.85742 -12.74149 -12.62704 -12.36612 -12.36178 -12.24615 -12.09715 -11.92134 -11.82159 -11.58749 -11.23043 -10.94701 -10.84537 -10.61712 -10.51346 -10.42649 -10.38518 -9.64166 -9.49352 -9.12234 -8.76861 -8.40497 -7.14633 -5.68128 -3.04742 2.72916 2.98075 3.10164 3.51065 3.58404 3.59812 3.95274 4.01282 4.18481 4.51675 4.61354 4.69370 4.73562 4.76987 4.93441 5.04869 5.08437 5.09871 5.14081 5.19975 5.29633 5.36027 5.43259 5.48477 5.53340 5.57137 5.61821 5.68751 5.81192 5.83823 5.86961 5.92830 5.94895 6.00485 6.04243 6.06488 6.20963 6.35148 6.49057 6.65219 6.86881 7.56263 8.05953 8.36594 8.49219 9.30297 10.03397 10.23084 11.48010 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.011825 B = 0.007214 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.280454 B = 3880.382362 C = 5537.359974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.122 3.878 3 H 0.101 0.899 4 C 0.148 3.852 5 N -0.751 5.751 6 C -0.245 4.245 7 H 0.088 0.912 8 C 0.008 3.992 9 N -0.935 5.935 10 Si 0.849 3.151 11 H -0.272 1.272 12 H -0.298 1.298 13 H -0.246 1.246 14 N -0.594 5.594 15 C 0.075 3.925 16 C 0.515 3.485 17 O -0.518 6.518 18 C -0.113 4.113 19 H 0.106 0.894 20 C -0.101 4.101 21 C -0.125 4.125 22 C -0.108 4.108 23 C -0.147 4.147 24 C -0.110 4.110 25 H 0.112 0.888 26 C 0.434 3.566 27 F -0.149 7.149 28 F -0.190 7.190 29 F -0.181 7.181 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.028 0.972 34 H 0.036 0.964 35 H 0.365 0.635 36 H 0.258 0.742 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.780 3.199 20.069 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.019 3.981 3 H 0.119 0.881 4 C 0.020 3.980 5 N -0.397 5.397 6 C -0.375 4.375 7 H 0.106 0.894 8 C -0.188 4.188 9 N -0.583 5.583 10 Si 0.678 3.322 11 H -0.198 1.198 12 H -0.225 1.225 13 H -0.171 1.171 14 N -0.326 5.326 15 C -0.068 4.068 16 C 0.303 3.697 17 O -0.395 6.395 18 C -0.134 4.134 19 H 0.124 0.876 20 C -0.139 4.139 21 C -0.162 4.162 22 C -0.145 4.145 23 C -0.184 4.184 24 C -0.130 4.130 25 H 0.130 0.870 26 C 0.380 3.620 27 F -0.130 7.130 28 F -0.172 7.172 29 F -0.163 7.163 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.199 0.801 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.568 3.697 19.708 23.150 hybrid contribution 1.236 0.062 0.670 1.407 sum -10.333 3.759 20.379 23.156 Atomic orbital electron populations 1.22031 0.94829 1.02187 1.02104 1.21467 0.93596 0.98547 0.84473 0.88053 1.20970 0.85962 0.97289 0.93827 1.42637 1.01108 1.71191 1.24745 1.19002 0.89856 1.29388 0.99219 0.89408 1.24630 0.96171 1.00391 0.97584 1.69709 1.07211 1.48735 1.32683 0.87286 0.79942 0.81229 0.83721 1.19802 1.22539 1.17068 1.47713 1.50310 1.12262 1.22333 1.21833 0.99908 0.81934 1.03132 1.20252 0.78352 0.87212 0.83898 1.90540 1.56525 1.16731 1.75662 1.21434 0.95845 1.01023 0.95130 0.87614 1.21430 0.97056 0.98157 0.97238 1.21604 0.97852 0.95151 1.01610 1.21401 0.94981 1.00687 0.97433 1.22192 0.99544 0.93348 1.03302 1.22278 0.92436 1.01674 0.96569 0.87006 1.20756 0.82841 0.74416 0.84037 1.93454 1.89415 1.74869 1.55238 1.93134 1.51759 1.86277 1.86029 1.93249 1.94931 1.37197 1.90896 0.91301 0.92289 0.92664 0.95445 0.94668 0.80116 0.93254 0.92884 0.89919 0.91283 0.90600 0.90490 0.91592 0.91189 0.92273 0.91414 0.91563 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.19 37.16 0.34 -1.41 16 2 C 0.12 1.91 2.80 -67.93 -0.19 1.72 16 3 H 0.10 1.80 6.90 -51.93 -0.36 1.45 16 4 C 0.15 2.85 5.50 -4.04 -0.02 2.83 16 5 N -0.75 -18.55 5.24 -59.91 -0.31 -18.87 16 6 C -0.24 -7.20 10.47 -15.06 -0.16 -7.35 16 7 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 8 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 9 N -0.94 -30.71 13.97 55.49 0.78 -29.94 16 10 Si 0.85 23.44 25.28 -169.99 -4.30 19.14 16 11 H -0.27 -7.33 5.76 56.52 0.33 -7.01 16 12 H -0.30 -8.52 7.11 56.52 0.40 -8.12 16 13 H -0.25 -6.56 4.02 56.52 0.23 -6.33 16 14 N -0.59 -8.72 2.24 -173.93 -0.39 -9.11 16 15 C 0.08 0.88 8.70 59.85 0.52 1.41 16 16 C 0.52 7.90 4.40 -10.99 -0.05 7.85 16 17 O -0.52 -9.25 9.55 5.56 0.05 -9.20 16 18 C -0.11 -1.38 1.64 -91.77 -0.15 -1.53 16 19 H 0.11 1.28 5.76 -51.93 -0.30 0.98 16 20 C -0.10 -0.87 5.38 -26.73 -0.14 -1.02 16 21 C -0.12 -1.12 5.68 -26.73 -0.15 -1.27 16 22 C -0.11 -0.98 5.92 -26.73 -0.16 -1.14 16 23 C -0.15 -1.79 4.69 -26.73 -0.13 -1.92 16 24 C -0.11 -1.42 2.06 -90.61 -0.19 -1.60 16 25 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 26 C 0.43 7.63 2.50 37.16 0.09 7.72 16 27 F -0.15 -3.12 9.60 2.25 0.02 -3.10 16 28 F -0.19 -3.27 17.03 2.25 0.04 -3.23 16 29 F -0.18 -3.54 13.58 2.25 0.03 -3.51 16 30 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 31 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.03 0.51 6.88 -51.93 -0.36 0.16 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.37 9.19 4.93 -40.82 -0.20 8.99 16 36 H 0.26 8.13 8.31 -40.82 -0.34 7.79 16 37 H 0.05 0.46 7.75 -51.93 -0.40 0.06 16 38 H 0.08 1.06 6.53 -51.93 -0.34 0.72 16 39 H 0.07 0.78 5.92 -51.93 -0.31 0.47 16 40 H 0.08 0.58 7.13 -51.93 -0.37 0.21 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.77 6.95 -51.93 -0.36 0.41 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.77 7.96 -51.93 -0.41 0.36 16 47 H 0.13 1.93 4.72 -52.04 -0.25 1.69 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -35.42 348.44 -6.55 -41.97 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -7.24 Total: 6.16 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -0.48 Total: 4.43 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.07 Total: -57.92 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.05 Total: -9.20 kcal Atomic # 9 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -4.30 Total: 19.14 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.42 -6.55 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732425190.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.120 kcal (2) G-P(sol) polarization free energy of solvation -35.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds