Wall clock time and date at job start Sat Apr 11 2020 04:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47044 * 2 1 4 4 C 1.52992 * 109.47123 * 119.99895 * 2 1 3 5 5 N 1.46501 * 109.47234 * 295.00216 * 4 2 1 6 6 C 1.36946 * 119.99855 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99866 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99771 * 180.02562 * 6 5 4 9 9 N 1.31615 * 120.00132 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99841 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46904 * 89.99665 * 10 8 6 12 12 H 1.48500 * 109.47154 * 209.99668 * 10 8 6 13 13 H 1.48501 * 109.46839 * 330.00067 * 10 8 6 14 14 C 1.53000 * 109.47443 * 240.00320 * 2 1 3 15 15 N 1.46507 * 109.47044 * 64.99292 * 14 2 1 16 16 C 1.34774 * 119.99899 * 180.02562 * 15 14 2 17 17 O 1.21286 * 119.99713 * 0.02562 * 16 15 14 18 18 C 1.50694 * 120.00329 * 180.02562 * 16 15 14 19 19 H 1.09005 * 109.47041 * 356.12138 * 18 16 15 20 20 C 1.53002 * 109.47036 * 236.13081 * 18 16 15 21 21 C 1.53005 * 109.46915 * 299.99266 * 20 18 16 22 22 C 1.53004 * 109.46933 * 300.00313 * 21 20 18 23 23 C 1.52995 * 109.47310 * 60.00086 * 22 21 20 24 24 C 1.52995 * 109.47689 * 116.12428 * 18 16 15 25 25 H 1.08995 * 109.47324 * 180.02562 * 24 18 16 26 26 C 1.52995 * 109.47149 * 300.00416 * 24 18 16 27 27 F 1.39897 * 109.47713 * 66.01728 * 26 24 18 28 28 F 1.39900 * 109.47197 * 186.01981 * 26 24 18 29 29 F 1.39900 * 109.47336 * 306.01505 * 26 24 18 30 30 H 1.08994 * 109.47080 * 299.99913 * 1 2 3 31 31 H 1.09001 * 109.47425 * 60.00169 * 1 2 3 32 32 H 1.09002 * 109.47044 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47236 * 55.00645 * 4 2 1 34 34 H 1.09010 * 109.47234 * 175.00303 * 4 2 1 35 35 H 0.96995 * 120.00347 * 359.97438 * 5 4 2 36 36 H 0.96998 * 120.00294 * 180.02562 * 9 8 6 37 37 H 1.08992 * 109.47400 * 184.99719 * 14 2 1 38 38 H 1.09003 * 109.46795 * 305.00391 * 14 2 1 39 39 H 0.96998 * 120.00067 * 0.02562 * 15 14 2 40 40 H 1.08997 * 109.47496 * 59.99256 * 20 18 16 41 41 H 1.09005 * 109.47084 * 179.97438 * 20 18 16 42 42 H 1.08997 * 109.47049 * 180.02562 * 21 20 18 43 43 H 1.08995 * 109.47025 * 60.00280 * 21 20 18 44 44 H 1.08995 * 109.47239 * 299.99836 * 22 21 20 45 45 H 1.09004 * 109.46557 * 179.97438 * 22 21 20 46 46 H 1.08997 * 109.47231 * 179.97438 * 23 22 21 47 47 H 1.09005 * 109.47212 * 59.99737 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 0.0354 2.4423 6 6 2.0019 -0.4203 3.6855 7 1 2.5630 -1.3376 3.7864 8 6 1.6342 0.2963 4.8161 9 7 0.9500 1.4139 4.6932 10 14 2.1104 -0.3256 6.5119 11 1 3.4327 0.2340 6.8911 12 1 1.0893 0.1033 7.5012 13 1 2.1879 -1.8084 6.4916 14 6 2.0401 -0.7212 -1.2493 15 7 1.6524 0.0355 -2.4424 16 6 1.9955 -0.4134 -3.6660 17 8 2.6249 -1.4440 -3.7793 18 6 1.5973 0.3650 -4.8933 19 1 0.9839 1.2171 -4.6000 20 6 0.7977 -0.5391 -5.8336 21 6 1.6586 -1.7351 -6.2454 22 6 2.9145 -1.2364 -6.9629 23 6 3.7140 -0.3322 -6.0227 24 6 2.8532 0.8637 -5.6108 25 1 2.5650 1.4272 -6.4983 26 6 3.6526 1.7679 -4.6706 27 9 4.1390 1.0121 -3.5984 28 9 4.7260 2.3328 -5.3677 29 9 2.8241 2.7856 -4.1858 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6055 -1.7197 1.2951 34 1 3.1264 -0.7994 1.2056 35 1 1.1488 0.8594 2.3518 36 1 0.6934 1.9149 5.4831 37 1 3.1263 -0.7993 -1.2056 38 1 1.6054 -1.7197 -1.2952 39 1 1.1487 0.8595 -2.3518 40 1 -0.0970 -0.8944 -5.3224 41 1 0.5093 0.0241 -6.7211 42 1 1.0892 -2.3790 -6.9156 43 1 1.9467 -2.2982 -5.3577 44 1 2.6264 -0.6733 -7.8506 45 1 3.5280 -2.0884 -7.2559 46 1 4.6090 0.0227 -6.5337 47 1 4.0022 -0.8954 -5.1349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753622252.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:34 Heat of formation + Delta-G solvation = -204.016559 kcal Electronic energy + Delta-G solvation = -31093.338962 eV Core-core repulsion = 26474.296098 eV Total energy + Delta-G solvation = -4619.042864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.33900 -47.83919 -47.75996 -40.83076 -37.92394 -36.49031 -34.38705 -32.73571 -32.16707 -31.43143 -29.96486 -26.83203 -26.05814 -25.30367 -23.57861 -22.49638 -22.17643 -21.23052 -20.42600 -19.51966 -18.60221 -18.47300 -17.93410 -17.17923 -16.76042 -16.11675 -15.74409 -15.20797 -14.83906 -14.63366 -14.56743 -14.49908 -14.22611 -14.18292 -13.94690 -13.93066 -13.85976 -13.65780 -13.43561 -13.08275 -12.92402 -12.65957 -12.61342 -12.49379 -12.26228 -12.15977 -12.02851 -11.51587 -11.22553 -11.04942 -10.89362 -10.71410 -10.68123 -10.61414 -10.54098 -10.39163 -10.03507 -9.69345 -9.42132 -8.98980 -8.86745 -6.91350 -5.76214 -3.04551 2.44963 2.46034 3.06146 3.44591 3.48500 3.49762 3.51334 3.62717 3.74666 4.30246 4.32792 4.44304 4.60077 4.73751 4.74718 4.78741 4.89884 4.97452 5.04112 5.08840 5.23279 5.26477 5.39723 5.46234 5.50990 5.58750 5.73264 5.80968 5.81754 5.88501 5.96236 5.99209 6.02593 6.10104 6.20731 6.29815 6.40246 6.53869 6.65866 6.78449 6.87786 7.43892 7.71278 8.14682 8.42991 9.54212 10.11669 10.46451 11.46851 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.019729 B = 0.002545 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.868297 B =10997.440815 C =11568.417994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.128 3.872 15 N -0.719 5.719 16 C 0.512 3.488 17 O -0.524 6.524 18 C -0.108 4.108 19 H 0.098 0.902 20 C -0.098 4.098 21 C -0.140 4.140 22 C -0.104 4.104 23 C -0.131 4.131 24 C -0.116 4.116 25 H 0.121 0.879 26 C 0.446 3.554 27 F -0.171 7.171 28 F -0.183 7.183 29 F -0.183 7.183 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.399 0.601 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.101 0.899 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 -0.643 -28.529 28.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.005 3.995 15 N -0.369 5.369 16 C 0.297 3.703 17 O -0.402 6.402 18 C -0.129 4.129 19 H 0.116 0.884 20 C -0.136 4.136 21 C -0.177 4.177 22 C -0.141 4.141 23 C -0.169 4.169 24 C -0.135 4.135 25 H 0.139 0.861 26 C 0.392 3.608 27 F -0.152 7.152 28 F -0.165 7.165 29 F -0.165 7.165 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.038 0.962 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.234 0.766 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.119 0.881 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.970 -1.478 -28.419 28.474 hybrid contribution -0.050 0.828 1.218 1.474 sum 0.920 -0.650 -27.201 27.224 Atomic orbital electron populations 1.21783 0.94688 1.01866 1.01454 1.21553 0.96669 1.00556 0.94245 0.90568 1.20565 0.96591 0.94161 0.85380 1.42342 1.66916 1.27689 1.00591 1.19242 1.28591 1.05450 0.83665 0.91164 1.24733 1.01023 0.97433 0.97853 1.69653 1.43553 1.16655 1.28488 0.86181 0.77586 0.78019 0.84367 1.21730 1.21788 1.20750 1.21414 1.00223 0.95104 0.82806 1.46135 1.57172 1.27674 1.05951 1.20250 0.79755 0.85958 0.84288 1.90562 1.39402 1.24250 1.85939 1.21334 0.96547 1.00114 0.94941 0.88387 1.21364 0.97746 0.96418 0.98040 1.21891 0.95649 0.97648 1.02562 1.21339 0.96758 0.98901 0.97127 1.21861 0.97316 0.94778 1.02908 1.22398 0.95588 0.97604 0.97954 0.86104 1.20698 0.78906 0.80050 0.81130 1.93246 1.88608 1.75368 1.57974 1.93177 1.58142 1.86274 1.78867 1.93184 1.71741 1.62302 1.89230 0.91168 0.93978 0.92842 0.96035 0.96165 0.78213 0.93535 0.91264 0.91308 0.76603 0.90838 0.90730 0.92081 0.88100 0.92398 0.91294 0.91153 0.87700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 2 C -0.11 -1.72 2.46 -90.62 -0.22 -1.94 16 3 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.16 3.23 5.65 -4.05 -0.02 3.20 16 5 N -0.73 -18.45 5.33 -59.91 -0.32 -18.77 16 6 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 7 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 10 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.13 1.74 5.07 -4.04 -0.02 1.72 16 15 N -0.72 -8.16 5.21 -60.29 -0.31 -8.47 16 16 C 0.51 5.75 4.20 -10.99 -0.05 5.70 16 17 O -0.52 -7.21 11.36 5.55 0.06 -7.14 16 18 C -0.11 -0.86 2.44 -91.78 -0.22 -1.08 16 19 H 0.10 0.63 7.44 -51.93 -0.39 0.24 16 20 C -0.10 -0.66 5.44 -26.73 -0.15 -0.81 16 21 C -0.14 -1.11 5.63 -26.73 -0.15 -1.26 16 22 C -0.10 -0.74 5.92 -26.73 -0.16 -0.90 16 23 C -0.13 -1.12 4.65 -26.73 -0.12 -1.24 16 24 C -0.12 -0.91 2.06 -90.62 -0.19 -1.10 16 25 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 26 C 0.45 4.56 2.63 37.15 0.10 4.66 16 27 F -0.17 -2.19 14.33 2.25 0.03 -2.15 16 28 F -0.18 -1.94 17.04 2.25 0.04 -1.90 16 29 F -0.18 -1.89 16.56 2.25 0.04 -1.86 16 30 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 31 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 35 H 0.38 10.08 6.85 -40.82 -0.28 9.80 16 36 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.40 3.88 7.50 -40.82 -0.31 3.58 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 1.08 5.37 -51.93 -0.28 0.80 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.54 7.96 -51.93 -0.41 0.13 16 47 H 0.10 1.19 5.18 -51.93 -0.27 0.92 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -31.81 372.85 -7.56 -39.37 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -7.30 Total: 7.49 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -1.12 Total: -2.16 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.09 Total: -54.82 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: 0.06 Total: -7.14 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.11 Total: -5.91 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.81 -7.56 -39.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753622252.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.644 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds