Wall clock time and date at job start Sat Apr 11 2020 04:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47044 * 2 1 4 4 C 1.52992 * 109.47123 * 119.99895 * 2 1 3 5 5 N 1.46501 * 109.47234 * 295.00216 * 4 2 1 6 6 C 1.36946 * 119.99855 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99866 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99771 * 180.02562 * 6 5 4 9 9 N 1.31615 * 120.00132 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99841 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46904 * 89.99665 * 10 8 6 12 12 H 1.48500 * 109.47154 * 209.99668 * 10 8 6 13 13 H 1.48501 * 109.46839 * 330.00067 * 10 8 6 14 14 C 1.53000 * 109.47443 * 240.00320 * 2 1 3 15 15 N 1.46507 * 109.47044 * 64.99292 * 14 2 1 16 16 C 1.34774 * 119.99899 * 180.02562 * 15 14 2 17 17 O 1.21286 * 119.99713 * 0.02562 * 16 15 14 18 18 C 1.50694 * 120.00329 * 180.02562 * 16 15 14 19 19 H 1.09005 * 109.47041 * 356.12138 * 18 16 15 20 20 C 1.53002 * 109.47036 * 236.13081 * 18 16 15 21 21 C 1.53005 * 109.46915 * 299.99266 * 20 18 16 22 22 C 1.53004 * 109.46933 * 300.00313 * 21 20 18 23 23 C 1.52995 * 109.47310 * 60.00086 * 22 21 20 24 24 C 1.52995 * 109.47689 * 116.12428 * 18 16 15 25 25 H 1.08995 * 109.47324 * 180.02562 * 24 18 16 26 26 C 1.52995 * 109.47149 * 300.00416 * 24 18 16 27 27 F 1.39897 * 109.47713 * 66.01728 * 26 24 18 28 28 F 1.39900 * 109.47197 * 186.01981 * 26 24 18 29 29 F 1.39900 * 109.47336 * 306.01505 * 26 24 18 30 30 H 1.08994 * 109.47080 * 299.99913 * 1 2 3 31 31 H 1.09001 * 109.47425 * 60.00169 * 1 2 3 32 32 H 1.09002 * 109.47044 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47236 * 55.00645 * 4 2 1 34 34 H 1.09010 * 109.47234 * 175.00303 * 4 2 1 35 35 H 0.96995 * 120.00347 * 359.97438 * 5 4 2 36 36 H 0.96998 * 120.00294 * 180.02562 * 9 8 6 37 37 H 1.08992 * 109.47400 * 184.99719 * 14 2 1 38 38 H 1.09003 * 109.46795 * 305.00391 * 14 2 1 39 39 H 0.96998 * 120.00067 * 0.02562 * 15 14 2 40 40 H 1.08997 * 109.47496 * 59.99256 * 20 18 16 41 41 H 1.09005 * 109.47084 * 179.97438 * 20 18 16 42 42 H 1.08997 * 109.47049 * 180.02562 * 21 20 18 43 43 H 1.08995 * 109.47025 * 60.00280 * 21 20 18 44 44 H 1.08995 * 109.47239 * 299.99836 * 22 21 20 45 45 H 1.09004 * 109.46557 * 179.97438 * 22 21 20 46 46 H 1.08997 * 109.47231 * 179.97438 * 23 22 21 47 47 H 1.09005 * 109.47212 * 59.99737 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 0.0354 2.4423 6 6 2.0019 -0.4203 3.6855 7 1 2.5630 -1.3376 3.7864 8 6 1.6342 0.2963 4.8161 9 7 0.9500 1.4139 4.6932 10 14 2.1104 -0.3256 6.5119 11 1 3.4327 0.2340 6.8911 12 1 1.0893 0.1033 7.5012 13 1 2.1879 -1.8084 6.4916 14 6 2.0401 -0.7212 -1.2493 15 7 1.6524 0.0355 -2.4424 16 6 1.9955 -0.4134 -3.6660 17 8 2.6249 -1.4440 -3.7793 18 6 1.5973 0.3650 -4.8933 19 1 0.9839 1.2171 -4.6000 20 6 0.7977 -0.5391 -5.8336 21 6 1.6586 -1.7351 -6.2454 22 6 2.9145 -1.2364 -6.9629 23 6 3.7140 -0.3322 -6.0227 24 6 2.8532 0.8637 -5.6108 25 1 2.5650 1.4272 -6.4983 26 6 3.6526 1.7679 -4.6706 27 9 4.1390 1.0121 -3.5984 28 9 4.7260 2.3328 -5.3677 29 9 2.8241 2.7856 -4.1858 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6055 -1.7197 1.2951 34 1 3.1264 -0.7994 1.2056 35 1 1.1488 0.8594 2.3518 36 1 0.6934 1.9149 5.4831 37 1 3.1263 -0.7993 -1.2056 38 1 1.6054 -1.7197 -1.2952 39 1 1.1487 0.8595 -2.3518 40 1 -0.0970 -0.8944 -5.3224 41 1 0.5093 0.0241 -6.7211 42 1 1.0892 -2.3790 -6.9156 43 1 1.9467 -2.2982 -5.3577 44 1 2.6264 -0.6733 -7.8506 45 1 3.5280 -2.0884 -7.2559 46 1 4.6090 0.0227 -6.5337 47 1 4.0022 -0.8954 -5.1349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753622252.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:33 Heat of formation + Delta-G solvation = -223.750696 kcal Electronic energy + Delta-G solvation = -31094.194698 eV Core-core repulsion = 26474.296098 eV Total energy + Delta-G solvation = -4619.898600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.15744 -48.64122 -48.62382 -41.62133 -38.90979 -37.69030 -35.90851 -34.19276 -32.89306 -32.32569 -31.59138 -27.91263 -27.34736 -26.57959 -24.77255 -23.73090 -22.98879 -22.00163 -21.55812 -20.61509 -19.43632 -19.27237 -19.14188 -18.64166 -17.70601 -17.15754 -16.77448 -16.37203 -16.13279 -15.73618 -15.49248 -15.45523 -15.33287 -15.09900 -15.04919 -14.85638 -14.78734 -14.71115 -14.60346 -14.39759 -13.96782 -13.63906 -13.58314 -13.35371 -13.27074 -13.14987 -12.96616 -12.83890 -12.80194 -12.23983 -12.17661 -12.14474 -11.95753 -11.89035 -11.68057 -11.61464 -11.30206 -11.16813 -10.95832 -10.26666 -9.98139 -9.01046 -7.96687 -5.25226 1.46529 1.48205 1.56717 1.61197 1.72448 2.17705 2.55740 2.75765 2.91218 3.01432 3.36918 3.58058 3.66052 3.72670 3.81779 3.95970 4.05086 4.11336 4.16409 4.22741 4.33774 4.34263 4.42578 4.48767 4.54108 4.71209 4.72486 4.78412 4.91950 4.95963 5.00072 5.03830 5.11473 5.17292 5.22643 5.32233 5.36012 5.37272 5.40895 5.47289 5.48656 5.75425 6.25994 6.56759 7.29138 7.32685 8.07572 8.32153 9.26856 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.019729 B = 0.002545 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.868297 B =10997.440815 C =11568.417994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.095 4.095 3 H 0.072 0.928 4 C 0.158 3.842 5 N -0.741 5.741 6 C -0.248 4.248 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.973 3.027 11 H -0.287 1.287 12 H -0.293 1.293 13 H -0.270 1.270 14 C 0.143 3.857 15 N -0.716 5.716 16 C 0.506 3.494 17 O -0.551 6.551 18 C -0.103 4.103 19 H 0.121 0.879 20 C -0.095 4.095 21 C -0.142 4.142 22 C -0.100 4.100 23 C -0.131 4.131 24 C -0.108 4.108 25 H 0.158 0.842 26 C 0.439 3.561 27 F -0.192 7.192 28 F -0.187 7.187 29 F -0.184 7.184 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.022 0.978 34 H 0.015 0.985 35 H 0.376 0.624 36 H 0.252 0.748 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.409 0.591 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.369 -0.383 -30.678 30.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.114 4.114 3 H 0.090 0.910 4 C 0.031 3.969 5 N -0.385 5.385 6 C -0.380 4.380 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.619 5.619 10 Si 0.802 3.198 11 H -0.215 1.215 12 H -0.219 1.219 13 H -0.195 1.195 14 C 0.018 3.982 15 N -0.368 5.368 16 C 0.293 3.707 17 O -0.430 6.430 18 C -0.125 4.125 19 H 0.139 0.861 20 C -0.132 4.132 21 C -0.179 4.179 22 C -0.137 4.137 23 C -0.169 4.169 24 C -0.128 4.128 25 H 0.175 0.825 26 C 0.385 3.615 27 F -0.173 7.173 28 F -0.168 7.168 29 F -0.165 7.165 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.033 0.967 35 H 0.209 0.791 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.245 0.755 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.177 -1.234 -30.602 30.627 hybrid contribution 0.266 0.706 1.830 1.979 sum 0.442 -0.528 -28.772 28.780 Atomic orbital electron populations 1.21701 0.93627 1.01989 1.01700 1.21331 0.97340 0.99781 0.92982 0.90975 1.20709 0.96304 0.94188 0.85719 1.42513 1.66785 1.27817 1.01356 1.19631 1.27894 1.05378 0.85068 0.90901 1.25551 1.01625 0.97895 1.01547 1.69801 1.44996 1.17899 1.29171 0.85144 0.76971 0.77987 0.79681 1.21454 1.21944 1.19526 1.21042 0.99070 0.95015 0.83027 1.46054 1.57480 1.27882 1.05419 1.20939 0.78959 0.85820 0.84948 1.90580 1.40403 1.25664 1.86384 1.21430 0.97036 1.00612 0.93410 0.86130 1.21420 0.97079 0.95885 0.98832 1.21848 0.96398 0.98201 1.01464 1.21335 0.96134 0.98776 0.97480 1.21808 0.98124 0.95027 1.01919 1.22510 0.94810 0.97046 0.98407 0.82484 1.21159 0.79039 0.80255 0.80999 1.93208 1.88976 1.75921 1.59200 1.93166 1.58523 1.86372 1.78773 1.93178 1.71594 1.62403 1.89331 0.94010 0.90537 0.92771 0.95957 0.96663 0.79108 0.93916 0.92883 0.91551 0.75469 0.90716 0.87591 0.90936 0.91461 0.89792 0.91730 0.90597 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 8.94 71.98 0.64 -3.15 16 2 C -0.10 -2.94 2.46 -10.80 -0.03 -2.97 16 3 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 4 C 0.16 6.42 5.65 86.38 0.49 6.90 16 5 N -0.74 -38.11 5.33 -343.45 -1.83 -39.94 16 6 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 7 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 8 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 9 N -0.97 -59.48 13.06 21.65 0.28 -59.19 16 10 Si 0.97 46.69 29.55 68.60 2.03 48.72 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 13 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 14 C 0.14 3.88 5.07 86.38 0.44 4.32 16 15 N -0.72 -15.52 5.21 -463.06 -2.41 -17.94 16 16 C 0.51 10.86 4.20 87.66 0.37 11.23 16 17 O -0.55 -15.33 11.36 -3.05 -0.03 -15.37 16 18 C -0.10 -1.37 2.44 -11.54 -0.03 -1.40 16 19 H 0.12 1.08 7.44 -2.38 -0.02 1.07 16 20 C -0.09 -0.96 5.44 30.60 0.17 -0.79 16 21 C -0.14 -1.96 5.63 30.60 0.17 -1.79 16 22 C -0.10 -1.20 5.92 30.59 0.18 -1.02 16 23 C -0.13 -2.06 4.65 30.59 0.14 -1.91 16 24 C -0.11 -1.42 2.06 -10.80 -0.02 -1.44 16 25 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 26 C 0.44 8.34 2.63 71.98 0.19 8.53 16 27 F -0.19 -4.91 14.33 44.97 0.64 -4.26 16 28 F -0.19 -3.71 17.04 44.97 0.77 -2.94 16 29 F -0.18 -3.44 16.56 44.97 0.74 -2.69 16 30 H 0.04 1.44 7.18 -2.39 -0.02 1.42 16 31 H 0.08 1.64 7.18 -2.39 -0.02 1.62 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.38 20.25 6.85 -92.71 -0.64 19.61 16 36 H 0.25 14.97 8.31 -92.71 -0.77 14.19 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.41 7.16 7.50 -92.71 -0.69 6.47 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 41 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 1.43 5.37 -2.39 -0.01 1.42 16 44 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.06 0.82 8.14 -2.38 -0.02 0.81 16 46 H 0.08 1.07 7.96 -2.39 -0.02 1.05 16 47 H 0.07 1.65 5.18 -2.38 -0.01 1.64 16 Total: -1.00 -70.29 372.85 3.87 -66.42 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -0.33 Total: 27.80 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 4.02 Total: -0.60 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -3.96 Total: -117.07 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.03 Total: -15.37 kcal Atomic # 9 Polarization: -12.05 SS G_CDS: 2.16 Total: -9.90 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -70.29 3.87 -66.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753622252.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.332 kcal (2) G-P(sol) polarization free energy of solvation -70.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds