Wall clock time and date at job start Sat Apr 11 2020 04:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47805 * 2 1 4 4 C 1.53000 * 109.47570 * 239.99524 * 2 1 3 5 5 N 1.46506 * 109.46797 * 64.99733 * 4 2 1 6 6 C 1.36933 * 119.99852 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99969 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00131 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99522 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00020 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47108 * 180.02562 * 10 8 6 12 12 H 1.48499 * 109.47163 * 299.99748 * 10 8 6 13 13 H 1.48496 * 109.47502 * 60.00079 * 10 8 6 14 14 C 1.53006 * 109.47033 * 119.99613 * 2 1 3 15 15 N 1.46498 * 109.47103 * 294.99828 * 14 2 1 16 16 C 1.34777 * 120.00123 * 179.97438 * 15 14 2 17 17 O 1.21284 * 119.99712 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00209 * 180.02562 * 16 15 14 19 19 H 1.08995 * 109.46906 * 356.13152 * 18 16 15 20 20 C 1.52997 * 109.47051 * 236.13472 * 18 16 15 21 21 C 1.53008 * 109.47131 * 299.99888 * 20 18 16 22 22 C 1.52993 * 109.47038 * 300.00197 * 21 20 18 23 23 C 1.52997 * 109.47321 * 59.99918 * 22 21 20 24 24 C 1.52994 * 109.46859 * 116.13539 * 18 16 15 25 25 H 1.09004 * 109.46884 * 180.02562 * 24 18 16 26 26 C 1.53003 * 109.46927 * 299.99915 * 24 18 16 27 27 F 1.39892 * 109.47402 * 66.02773 * 26 24 18 28 28 F 1.39904 * 109.47025 * 186.02570 * 26 24 18 29 29 F 1.39905 * 109.47276 * 306.02054 * 26 24 18 30 30 H 1.08998 * 109.47344 * 300.00335 * 1 2 3 31 31 H 1.08999 * 109.47205 * 60.00470 * 1 2 3 32 32 H 1.09001 * 109.47042 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46725 * 305.00436 * 4 2 1 34 34 H 1.08990 * 109.47692 * 185.00015 * 4 2 1 35 35 H 0.97000 * 119.99830 * 0.02562 * 5 4 2 36 36 H 0.96996 * 120.00453 * 359.97438 * 9 8 6 37 37 H 1.08996 * 109.47097 * 55.00101 * 14 2 1 38 38 H 1.08999 * 109.47044 * 175.00220 * 14 2 1 39 39 H 0.96999 * 120.00066 * 0.02562 * 15 14 2 40 40 H 1.09004 * 109.47578 * 59.99918 * 20 18 16 41 41 H 1.08997 * 109.47004 * 180.02562 * 20 18 16 42 42 H 1.08997 * 109.47059 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.46913 * 60.00267 * 21 20 18 44 44 H 1.09004 * 109.47155 * 300.00198 * 22 21 20 45 45 H 1.09004 * 109.47197 * 179.97438 * 22 21 20 46 46 H 1.09004 * 109.47578 * 179.97438 * 23 22 21 47 47 H 1.08998 * 109.47454 * 59.99986 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6524 0.0352 -2.4424 6 6 2.0011 -0.4210 -3.6855 7 1 2.5622 -1.3383 -3.7863 8 6 1.6343 0.2961 -4.8161 9 7 0.9518 1.4147 -4.6931 10 14 2.1094 -0.3267 -6.5119 11 1 1.6030 0.6132 -7.5442 12 1 3.5883 -0.4181 -6.6093 13 1 1.5149 -1.6698 -6.7305 14 6 2.0399 -0.7212 1.2493 15 7 1.6524 0.0355 2.4424 16 6 1.9955 -0.4133 3.6660 17 8 2.6255 -1.4435 3.7794 18 6 1.5963 0.3647 4.8934 19 1 1.1012 1.2881 4.5930 20 6 2.8439 0.6986 5.7136 21 6 3.5391 -0.5976 6.1352 22 6 2.5814 -1.4376 6.9825 23 6 1.3338 -1.7715 6.1622 24 6 0.6387 -0.4753 5.7406 25 1 0.3496 0.0876 6.6281 26 6 -0.6089 -0.8092 4.9203 27 9 -0.2571 -1.6464 3.8562 28 9 -1.5429 -1.4581 5.7351 29 9 -1.1677 0.3717 4.4197 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7996 -1.2055 35 1 1.1488 0.8593 -2.3518 36 1 0.7048 1.7379 -3.8125 37 1 1.6053 -1.7197 1.2953 38 1 3.1262 -0.7994 1.2057 39 1 1.1482 0.8592 2.3517 40 1 3.5263 1.2971 5.1100 41 1 2.5552 1.2610 6.6015 42 1 4.4282 -0.3597 6.7192 43 1 3.8278 -1.1603 5.2475 44 1 2.2926 -0.8748 7.8702 45 1 3.0764 -2.3612 7.2825 46 1 0.6516 -2.3703 6.7657 47 1 1.6224 -2.3342 5.2745 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753622253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:37 Heat of formation + Delta-G solvation = -203.638716 kcal Electronic energy + Delta-G solvation = -31209.728160 eV Core-core repulsion = 26590.701680 eV Total energy + Delta-G solvation = -4619.026479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.38638 -47.88550 -47.80883 -40.87363 -37.98568 -36.59298 -34.58860 -32.90309 -32.21959 -31.46747 -29.79765 -26.90491 -26.05738 -25.09387 -23.55802 -22.60206 -22.27325 -21.29047 -20.49784 -19.59410 -18.63970 -18.51933 -17.97811 -17.31583 -16.90886 -16.03785 -15.95724 -15.21951 -14.89000 -14.75343 -14.59214 -14.55194 -14.28276 -14.19159 -14.08504 -13.99502 -13.90602 -13.67069 -13.53898 -13.21470 -13.01588 -12.70214 -12.66930 -12.61094 -12.33541 -12.18683 -12.13472 -11.55505 -11.25277 -10.99794 -10.82651 -10.74238 -10.64534 -10.61148 -10.60218 -10.37018 -9.97136 -9.49538 -9.16546 -9.04526 -8.87771 -6.99942 -6.10223 -3.09560 2.40495 2.41549 3.00837 3.43874 3.52624 3.56242 3.58567 3.70390 3.73546 4.26146 4.28898 4.40437 4.67022 4.70114 4.71493 4.75345 4.86601 4.93443 4.99659 5.02170 5.14691 5.23257 5.30658 5.43576 5.48028 5.62157 5.70460 5.74640 5.78453 5.85941 5.87782 5.90819 5.94187 5.97972 6.12449 6.23547 6.31445 6.48042 6.54425 6.68220 6.78780 7.38224 7.81693 8.09762 8.76236 9.23397 10.09696 10.24644 11.38492 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.021060 B = 0.002531 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.193633 B =11058.715020 C =11710.917428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 H 0.074 0.926 4 C 0.167 3.833 5 N -0.742 5.742 6 C -0.331 4.331 7 H 0.064 0.936 8 C -0.046 4.046 9 N -0.945 5.945 10 Si 1.081 2.919 11 H -0.285 1.285 12 H -0.295 1.295 13 H -0.295 1.295 14 C 0.129 3.871 15 N -0.719 5.719 16 C 0.512 3.488 17 O -0.523 6.523 18 C -0.107 4.107 19 H 0.098 0.902 20 C -0.098 4.098 21 C -0.141 4.141 22 C -0.104 4.104 23 C -0.131 4.131 24 C -0.116 4.116 25 H 0.121 0.879 26 C 0.446 3.554 27 F -0.171 7.171 28 F -0.183 7.183 29 F -0.183 7.183 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.023 0.977 34 H 0.021 0.979 35 H 0.367 0.633 36 H 0.254 0.746 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.399 0.601 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.101 0.899 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.132 -1.531 28.663 28.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 H 0.093 0.907 4 C 0.039 3.961 5 N -0.388 5.388 6 C -0.462 4.462 7 H 0.082 0.918 8 C -0.243 4.243 9 N -0.591 5.591 10 Si 0.911 3.089 11 H -0.210 1.210 12 H -0.223 1.223 13 H -0.223 1.223 14 C 0.005 3.995 15 N -0.370 5.370 16 C 0.298 3.702 17 O -0.401 6.401 18 C -0.129 4.129 19 H 0.116 0.884 20 C -0.136 4.136 21 C -0.178 4.178 22 C -0.141 4.141 23 C -0.169 4.169 24 C -0.135 4.135 25 H 0.139 0.861 26 C 0.392 3.608 27 F -0.152 7.152 28 F -0.164 7.164 29 F -0.165 7.165 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.200 0.800 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.234 0.766 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.119 0.881 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.327 -2.190 27.027 27.117 hybrid contribution -0.702 0.365 1.494 1.691 sum -0.376 -1.825 28.521 28.582 Atomic orbital electron populations 1.21772 0.94658 1.02059 1.01265 1.21570 0.96690 1.00393 0.94414 0.90718 1.20501 0.96599 0.94120 0.84910 1.42345 1.67610 1.27326 1.01516 1.20042 1.33107 1.07950 0.85064 0.91754 1.25783 0.99531 0.96629 1.02398 1.70888 1.41083 1.22011 1.25083 0.83233 0.75431 0.74883 0.75327 1.21030 1.22266 1.22255 1.21394 1.00031 0.95347 0.82728 1.46127 1.57183 1.27716 1.05974 1.20263 0.79894 0.85785 0.84288 1.90565 1.39528 1.24026 1.85935 1.21332 0.98346 0.98865 0.94372 0.88399 1.21368 0.94420 0.98671 0.99140 1.21889 0.97705 0.96037 1.02134 1.21338 0.95125 1.00292 0.97367 1.21860 0.97407 0.94415 1.03173 1.22402 0.91006 1.01333 0.98806 0.86076 1.20704 0.85995 0.74694 0.79393 1.93243 1.91514 1.72183 1.58268 1.93179 1.68508 1.82124 1.72631 1.93183 1.87150 1.47609 1.88539 0.93779 0.91624 0.92688 0.95924 0.96081 0.79958 0.93493 0.91188 0.91279 0.76632 0.90816 0.90685 0.92031 0.88128 0.92371 0.91267 0.91136 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.94 37.15 0.33 -1.80 16 2 C -0.11 -1.73 2.46 -90.62 -0.22 -1.95 16 3 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.17 3.38 5.65 -4.04 -0.02 3.36 16 5 N -0.74 -18.78 5.33 -59.91 -0.32 -19.10 16 6 C -0.33 -9.48 9.99 -15.06 -0.15 -9.63 16 7 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 8 C -0.05 -1.36 5.50 -17.43 -0.10 -1.45 16 9 N -0.94 -29.39 13.70 55.49 0.76 -28.63 16 10 Si 1.08 26.20 29.92 -169.99 -5.09 21.11 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.13 1.75 5.06 -4.04 -0.02 1.73 16 15 N -0.72 -8.13 5.21 -60.29 -0.31 -8.44 16 16 C 0.51 5.73 4.20 -10.99 -0.05 5.68 16 17 O -0.52 -7.18 11.36 5.55 0.06 -7.12 16 18 C -0.11 -0.85 2.44 -91.78 -0.22 -1.08 16 19 H 0.10 0.62 7.44 -51.93 -0.39 0.24 16 20 C -0.10 -0.67 5.44 -26.73 -0.15 -0.81 16 21 C -0.14 -1.11 5.63 -26.73 -0.15 -1.26 16 22 C -0.10 -0.73 5.92 -26.74 -0.16 -0.89 16 23 C -0.13 -1.10 4.65 -26.73 -0.12 -1.23 16 24 C -0.12 -0.89 2.06 -90.62 -0.19 -1.08 16 25 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 26 C 0.45 4.44 2.63 37.16 0.10 4.54 16 27 F -0.17 -2.12 14.33 2.25 0.03 -2.09 16 28 F -0.18 -1.88 17.04 2.25 0.04 -1.85 16 29 F -0.18 -1.84 16.57 2.25 0.04 -1.80 16 30 H 0.04 0.56 7.18 -51.93 -0.37 0.18 16 31 H 0.06 1.14 7.18 -51.93 -0.37 0.77 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.37 9.38 5.68 -40.82 -0.23 9.15 16 36 H 0.25 7.74 6.77 -40.82 -0.28 7.46 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.40 3.84 7.49 -40.82 -0.31 3.54 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.10 1.08 5.37 -51.93 -0.28 0.80 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.53 7.96 -51.93 -0.41 0.12 16 47 H 0.10 1.17 5.18 -51.93 -0.27 0.91 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -32.99 371.14 -7.50 -40.49 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -7.19 Total: 7.71 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -1.12 Total: -5.87 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.13 Total: -56.17 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: 0.06 Total: -7.12 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.11 Total: -5.74 kcal Atomic # 14 Polarization: 26.20 SS G_CDS: -5.09 Total: 21.11 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.99 -7.50 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753622253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.150 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds