Wall clock time and date at job start Sat Apr 11 2020 04:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47805 * 2 1 4 4 C 1.53000 * 109.47570 * 239.99524 * 2 1 3 5 5 N 1.46506 * 109.46797 * 64.99733 * 4 2 1 6 6 C 1.36933 * 119.99852 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99969 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00131 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99522 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00020 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47108 * 180.02562 * 10 8 6 12 12 H 1.48499 * 109.47163 * 299.99748 * 10 8 6 13 13 H 1.48496 * 109.47502 * 60.00079 * 10 8 6 14 14 C 1.53006 * 109.47033 * 119.99613 * 2 1 3 15 15 N 1.46498 * 109.47103 * 294.99828 * 14 2 1 16 16 C 1.34777 * 120.00123 * 179.97438 * 15 14 2 17 17 O 1.21284 * 119.99712 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00209 * 180.02562 * 16 15 14 19 19 H 1.08995 * 109.46906 * 356.13152 * 18 16 15 20 20 C 1.52997 * 109.47051 * 236.13472 * 18 16 15 21 21 C 1.53008 * 109.47131 * 299.99888 * 20 18 16 22 22 C 1.52993 * 109.47038 * 300.00197 * 21 20 18 23 23 C 1.52997 * 109.47321 * 59.99918 * 22 21 20 24 24 C 1.52994 * 109.46859 * 116.13539 * 18 16 15 25 25 H 1.09004 * 109.46884 * 180.02562 * 24 18 16 26 26 C 1.53003 * 109.46927 * 299.99915 * 24 18 16 27 27 F 1.39892 * 109.47402 * 66.02773 * 26 24 18 28 28 F 1.39904 * 109.47025 * 186.02570 * 26 24 18 29 29 F 1.39905 * 109.47276 * 306.02054 * 26 24 18 30 30 H 1.08998 * 109.47344 * 300.00335 * 1 2 3 31 31 H 1.08999 * 109.47205 * 60.00470 * 1 2 3 32 32 H 1.09001 * 109.47042 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46725 * 305.00436 * 4 2 1 34 34 H 1.08990 * 109.47692 * 185.00015 * 4 2 1 35 35 H 0.97000 * 119.99830 * 0.02562 * 5 4 2 36 36 H 0.96996 * 120.00453 * 359.97438 * 9 8 6 37 37 H 1.08996 * 109.47097 * 55.00101 * 14 2 1 38 38 H 1.08999 * 109.47044 * 175.00220 * 14 2 1 39 39 H 0.96999 * 120.00066 * 0.02562 * 15 14 2 40 40 H 1.09004 * 109.47578 * 59.99918 * 20 18 16 41 41 H 1.08997 * 109.47004 * 180.02562 * 20 18 16 42 42 H 1.08997 * 109.47059 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.46913 * 60.00267 * 21 20 18 44 44 H 1.09004 * 109.47155 * 300.00198 * 22 21 20 45 45 H 1.09004 * 109.47197 * 179.97438 * 22 21 20 46 46 H 1.09004 * 109.47578 * 179.97438 * 23 22 21 47 47 H 1.08998 * 109.47454 * 59.99986 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6524 0.0352 -2.4424 6 6 2.0011 -0.4210 -3.6855 7 1 2.5622 -1.3383 -3.7863 8 6 1.6343 0.2961 -4.8161 9 7 0.9518 1.4147 -4.6931 10 14 2.1094 -0.3267 -6.5119 11 1 1.6030 0.6132 -7.5442 12 1 3.5883 -0.4181 -6.6093 13 1 1.5149 -1.6698 -6.7305 14 6 2.0399 -0.7212 1.2493 15 7 1.6524 0.0355 2.4424 16 6 1.9955 -0.4133 3.6660 17 8 2.6255 -1.4435 3.7794 18 6 1.5963 0.3647 4.8934 19 1 1.1012 1.2881 4.5930 20 6 2.8439 0.6986 5.7136 21 6 3.5391 -0.5976 6.1352 22 6 2.5814 -1.4376 6.9825 23 6 1.3338 -1.7715 6.1622 24 6 0.6387 -0.4753 5.7406 25 1 0.3496 0.0876 6.6281 26 6 -0.6089 -0.8092 4.9203 27 9 -0.2571 -1.6464 3.8562 28 9 -1.5429 -1.4581 5.7351 29 9 -1.1677 0.3717 4.4197 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7996 -1.2055 35 1 1.1488 0.8593 -2.3518 36 1 0.7048 1.7379 -3.8125 37 1 1.6053 -1.7197 1.2953 38 1 3.1262 -0.7994 1.2057 39 1 1.1482 0.8592 2.3517 40 1 3.5263 1.2971 5.1100 41 1 2.5552 1.2610 6.6015 42 1 4.4282 -0.3597 6.7192 43 1 3.8278 -1.1603 5.2475 44 1 2.2926 -0.8748 7.8702 45 1 3.0764 -2.3612 7.2825 46 1 0.6516 -2.3703 6.7657 47 1 1.6224 -2.3342 5.2745 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753622253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:36 Heat of formation + Delta-G solvation = -224.286018 kcal Electronic energy + Delta-G solvation = -31210.623494 eV Core-core repulsion = 26590.701680 eV Total energy + Delta-G solvation = -4619.921814 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.17562 -48.65786 -48.64131 -41.66423 -39.00604 -37.81506 -36.16262 -34.32859 -32.91292 -32.30009 -31.49677 -28.01287 -27.17277 -26.52443 -24.91010 -23.85997 -23.02285 -22.04698 -21.64770 -20.65661 -19.48748 -19.35202 -19.29037 -18.67619 -17.81404 -17.10730 -16.87617 -16.60709 -16.05078 -15.78038 -15.73077 -15.52605 -15.35585 -15.18135 -15.06565 -14.88357 -14.80903 -14.72378 -14.60435 -14.56630 -14.03331 -13.78595 -13.65310 -13.39790 -13.30932 -13.16438 -12.86176 -12.82980 -12.65052 -12.26588 -12.18634 -12.05434 -11.91142 -11.83009 -11.81579 -11.33269 -11.27639 -11.19683 -10.95886 -10.30592 -10.03968 -9.13687 -8.42571 -5.36213 1.56826 1.57643 1.67521 1.70139 1.84193 2.12131 2.70089 2.73282 2.88829 2.99466 3.37172 3.54249 3.58572 3.63612 3.78065 3.84333 3.94834 4.04915 4.12837 4.15195 4.20127 4.31268 4.39364 4.42890 4.46449 4.61989 4.67268 4.70957 4.80780 4.90793 4.93361 4.96970 4.99319 5.14560 5.19344 5.20985 5.29175 5.33475 5.34747 5.38285 5.55811 5.71827 6.48042 6.51335 7.07196 7.24367 7.97506 8.08203 9.09777 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.021060 B = 0.002531 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.193633 B =11058.715020 C =11710.917428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 H 0.080 0.920 4 C 0.164 3.836 5 N -0.753 5.753 6 C -0.339 4.339 7 H 0.064 0.936 8 C -0.102 4.102 9 N -0.973 5.973 10 Si 1.128 2.872 11 H -0.291 1.291 12 H -0.277 1.277 13 H -0.279 1.279 14 C 0.143 3.857 15 N -0.717 5.717 16 C 0.506 3.494 17 O -0.551 6.551 18 C -0.103 4.103 19 H 0.121 0.879 20 C -0.095 4.095 21 C -0.142 4.142 22 C -0.100 4.100 23 C -0.131 4.131 24 C -0.109 4.109 25 H 0.158 0.842 26 C 0.440 3.560 27 F -0.191 7.191 28 F -0.187 7.187 29 F -0.183 7.183 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.047 0.953 33 H 0.016 0.984 34 H 0.019 0.981 35 H 0.363 0.637 36 H 0.245 0.755 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.409 0.591 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 -0.717 30.722 30.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.113 4.113 3 H 0.098 0.902 4 C 0.037 3.963 5 N -0.398 5.398 6 C -0.470 4.470 7 H 0.082 0.918 8 C -0.294 4.294 9 N -0.621 5.621 10 Si 0.953 3.047 11 H -0.217 1.217 12 H -0.203 1.203 13 H -0.205 1.205 14 C 0.019 3.981 15 N -0.369 5.369 16 C 0.293 3.707 17 O -0.430 6.430 18 C -0.125 4.125 19 H 0.139 0.861 20 C -0.133 4.133 21 C -0.179 4.179 22 C -0.137 4.137 23 C -0.169 4.169 24 C -0.128 4.128 25 H 0.175 0.825 26 C 0.386 3.614 27 F -0.172 7.172 28 F -0.168 7.168 29 F -0.165 7.165 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.037 0.963 35 H 0.196 0.804 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.245 0.755 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.415 -1.387 29.138 29.174 hybrid contribution -0.721 0.037 0.923 1.171 sum -0.305 -1.350 30.060 30.092 Atomic orbital electron populations 1.21693 0.94179 1.01669 1.01491 1.21342 0.96845 1.00123 0.93006 0.90160 1.20635 0.96423 0.93876 0.85397 1.42511 1.67572 1.27602 1.02117 1.20398 1.32282 1.07738 0.86591 0.91814 1.27228 0.99451 0.96438 1.06244 1.70991 1.43035 1.23440 1.24646 0.82626 0.76189 0.74877 0.71057 1.21652 1.20344 1.20489 1.21021 0.99364 0.94763 0.82983 1.46042 1.57495 1.27916 1.05420 1.20959 0.79104 0.85640 0.84949 1.90582 1.40597 1.25401 1.86375 1.21424 0.99209 0.99080 0.92737 0.86135 1.21424 0.93594 0.98177 1.00097 1.21847 0.98607 0.96461 1.01020 1.21334 0.94172 1.00426 0.97791 1.21807 0.98275 0.94682 1.02101 1.22509 0.89573 1.01259 0.99462 0.82477 1.21123 0.86798 0.74329 0.79128 1.93207 1.91694 1.72919 1.59392 1.93169 1.68804 1.82267 1.72557 1.93179 1.87276 1.47396 1.88610 0.90783 0.94038 0.93388 0.96556 0.96286 0.80382 0.94482 0.92464 0.91950 0.75458 0.90881 0.87517 0.90959 0.91537 0.89755 0.91703 0.90505 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 8.94 71.98 0.64 -3.35 16 2 C -0.09 -2.90 2.46 -10.79 -0.03 -2.93 16 3 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 4 C 0.16 6.73 5.65 86.38 0.49 7.21 16 5 N -0.75 -38.72 5.33 -343.45 -1.83 -40.55 16 6 C -0.34 -19.59 9.99 84.03 0.84 -18.75 16 7 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 8 C -0.10 -6.03 5.50 84.86 0.47 -5.57 16 9 N -0.97 -61.31 13.70 21.65 0.30 -61.01 16 10 Si 1.13 52.61 29.92 68.60 2.05 54.66 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 12 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 14 C 0.14 3.90 5.06 86.38 0.44 4.33 16 15 N -0.72 -15.45 5.21 -463.06 -2.41 -17.86 16 16 C 0.51 10.84 4.20 87.66 0.37 11.21 16 17 O -0.55 -15.32 11.36 -3.04 -0.03 -15.35 16 18 C -0.10 -1.36 2.44 -11.54 -0.03 -1.39 16 19 H 0.12 1.07 7.44 -2.39 -0.02 1.05 16 20 C -0.10 -0.99 5.44 30.60 0.17 -0.83 16 21 C -0.14 -1.99 5.63 30.59 0.17 -1.82 16 22 C -0.10 -1.19 5.92 30.59 0.18 -1.01 16 23 C -0.13 -2.01 4.65 30.59 0.14 -1.87 16 24 C -0.11 -1.38 2.06 -10.80 -0.02 -1.40 16 25 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 26 C 0.44 7.99 2.63 71.98 0.19 8.18 16 27 F -0.19 -4.67 14.33 44.97 0.64 -4.02 16 28 F -0.19 -3.55 17.04 44.97 0.77 -2.78 16 29 F -0.18 -3.24 16.57 44.97 0.74 -2.50 16 30 H 0.07 1.76 7.18 -2.39 -0.02 1.75 16 31 H 0.04 1.45 7.18 -2.39 -0.02 1.43 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.36 19.01 5.68 -92.71 -0.53 18.48 16 36 H 0.24 15.27 6.77 -92.71 -0.63 14.64 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.41 7.07 7.49 -92.71 -0.69 6.38 16 40 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 1.43 5.37 -2.39 -0.01 1.42 16 44 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.08 1.05 7.96 -2.38 -0.02 1.03 16 47 H 0.07 1.62 5.18 -2.39 -0.01 1.61 16 Total: -1.00 -72.79 371.14 4.16 -68.62 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -0.08 Total: 28.77 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 4.02 Total: -7.97 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -3.95 Total: -119.43 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.03 Total: -15.35 kcal Atomic # 9 Polarization: -11.46 SS G_CDS: 2.16 Total: -9.31 kcal Atomic # 14 Polarization: 52.61 SS G_CDS: 2.05 Total: 54.66 kcal Total: -72.79 4.16 -68.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753622253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.662 kcal (2) G-P(sol) polarization free energy of solvation -72.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds