Wall clock time and date at job start Sat Apr 11 2020 04:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 O 1.42904 * 109.47174 * 270.02344 * 8 7 6 10 10 C 1.42894 * 113.99876 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.47119 * 179.97438 * 10 9 8 12 12 O 1.21289 * 119.99694 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00371 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99884 * 0.02562 * 13 11 10 15 15 C 1.46495 * 120.00230 * 179.97438 * 13 11 10 16 16 H 1.08998 * 109.47233 * 0.02562 * 15 13 11 17 17 C 1.53006 * 109.47409 * 240.00179 * 15 13 11 18 18 C 1.52997 * 109.47035 * 120.00395 * 15 13 11 19 19 N 1.46501 * 109.47297 * 304.99911 * 18 15 13 20 20 C 1.36930 * 120.00411 * 179.97438 * 19 18 15 21 21 H 1.08001 * 119.99563 * 0.02562 * 20 19 18 22 22 C 1.38808 * 120.00271 * 179.97438 * 20 19 18 23 23 N 1.31615 * 120.00011 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00043 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47054 * 60.00453 * 24 22 20 26 26 H 1.48499 * 109.47080 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47585 * 300.00326 * 24 22 20 28 28 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 29 29 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 30 30 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 32 32 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 33 33 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 34 34 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 35 35 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 36 36 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 37 37 H 1.09005 * 109.47094 * 299.99472 * 10 9 8 38 38 H 1.08996 * 109.47524 * 59.99784 * 10 9 8 39 39 H 1.08997 * 109.47558 * 89.99396 * 14 13 11 40 40 H 1.08997 * 109.46905 * 209.99861 * 14 13 11 41 41 H 1.09005 * 109.46859 * 329.98990 * 14 13 11 42 42 H 1.08993 * 109.47126 * 179.97438 * 17 15 13 43 43 H 1.08994 * 109.47210 * 300.00550 * 17 15 13 44 44 H 1.09000 * 109.46695 * 59.99990 * 17 15 13 45 45 H 1.09003 * 109.47314 * 65.00050 * 18 15 13 46 46 H 1.09008 * 109.47208 * 184.99996 * 18 15 13 47 47 H 0.96997 * 119.99548 * 0.02562 * 19 18 15 48 48 H 0.96999 * 120.00135 * 179.97438 * 23 22 20 49 49 H 1.08006 * 120.02917 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 8 6.0354 2.6239 -1.3486 10 6 7.4578 2.7000 -1.4625 11 6 7.8448 2.7204 -2.9188 12 8 6.9870 2.6738 -3.7749 13 7 9.1441 2.7903 -3.2699 14 6 10.1804 2.8460 -2.2358 15 6 9.5204 2.8096 -4.6856 16 1 8.6220 2.7610 -5.3010 17 6 10.4148 1.6066 -4.9921 18 6 10.2800 4.1014 -4.9939 19 7 9.4697 5.2528 -4.5892 20 6 9.9475 6.5234 -4.7688 21 1 10.9216 6.6767 -5.2093 22 6 9.1795 7.6144 -4.3858 23 7 7.9922 7.4276 -3.8495 24 14 9.8317 9.3477 -4.6302 25 1 10.0903 9.5802 -6.0739 26 1 8.8281 10.3276 -4.1426 27 1 11.0954 9.5133 -3.8680 28 6 3.4311 1.2849 -0.0001 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2128 2.3203 -0.0106 33 1 1.3339 4.5114 0.0011 34 1 3.7922 4.6381 0.0002 35 1 5.8760 3.5065 0.5126 36 1 5.9718 1.7291 0.5125 37 1 7.8128 3.6102 -0.9791 38 1 7.9079 1.8328 -0.9794 39 1 10.4926 1.8337 -1.9793 40 1 11.0370 3.4067 -2.6097 41 1 9.7824 3.3393 -1.3489 42 1 10.6943 1.6206 -6.0455 43 1 11.3130 1.6555 -4.3767 44 1 9.8736 0.6862 -4.7724 45 1 11.2217 4.1090 -4.4451 46 1 10.4823 4.1575 -6.0636 47 1 8.5950 5.1151 -4.1932 48 1 7.4556 8.1900 -3.5815 49 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753699671.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:39 Heat of formation + Delta-G solvation = -68.063906 kcal Electronic energy + Delta-G solvation = -28910.594771 eV Core-core repulsion = 24839.303997 eV Total energy + Delta-G solvation = -4071.290774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.30202 -39.70483 -38.20192 -37.05850 -36.03869 -33.96016 -32.21032 -31.78448 -30.56326 -30.08748 -27.92621 -27.45326 -26.58433 -25.68409 -25.43472 -22.67358 -22.59859 -21.30566 -20.97856 -18.75093 -18.09255 -17.11010 -17.02258 -16.60793 -16.29021 -16.16873 -15.92869 -15.83589 -15.61790 -14.86105 -14.60819 -14.38350 -13.91601 -13.68497 -13.55914 -13.20856 -13.19603 -12.83422 -12.82560 -12.37241 -12.32879 -12.25538 -12.13477 -11.95264 -11.85679 -11.77199 -11.49039 -11.40039 -11.24007 -10.90696 -10.81224 -10.73631 -10.42814 -10.04664 -9.66256 -9.64473 -9.29521 -9.01843 -8.82923 -8.32292 -8.21824 -6.86225 -5.69083 -2.98916 1.09753 1.35515 2.95505 3.05422 3.12130 3.45890 3.50343 3.51745 3.60553 4.18072 4.61081 4.62468 4.66973 4.84232 4.85745 4.87956 4.97337 5.06242 5.18448 5.19003 5.22095 5.28758 5.32508 5.32619 5.41915 5.44254 5.48309 5.59224 5.59575 5.65084 5.72045 5.89339 5.93327 6.08475 6.14070 6.14238 6.22941 6.31961 6.41309 6.49838 6.54206 6.59734 6.75927 6.95495 7.16388 7.22151 7.72668 7.77683 8.48065 8.63320 9.59296 10.18522 10.53932 11.52709 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011626 B = 0.002591 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.740672 B =10803.511982 C =12475.756860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.119 3.881 4 C -0.203 4.203 5 C -0.084 4.084 6 C -0.129 4.129 7 C -0.048 4.048 8 C 0.101 3.899 9 O -0.353 6.353 10 C 0.048 3.952 11 C 0.519 3.481 12 O -0.518 6.518 13 N -0.598 5.598 14 C 0.080 3.920 15 C 0.127 3.873 16 H 0.100 0.900 17 C -0.154 4.154 18 C 0.144 3.856 19 N -0.728 5.728 20 C -0.242 4.242 21 H 0.068 0.932 22 C -0.013 4.013 23 N -0.928 5.928 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.287 1.287 28 C -0.128 4.128 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.020 0.980 46 H 0.028 0.972 47 H 0.387 0.613 48 H 0.255 0.745 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.500 -15.881 12.394 21.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.074 3.926 4 C -0.222 4.222 5 C -0.102 4.102 6 C -0.147 4.147 7 C -0.048 4.048 8 C 0.024 3.976 9 O -0.271 6.271 10 C -0.032 4.032 11 C 0.306 3.694 12 O -0.392 6.392 13 N -0.333 5.333 14 C -0.063 4.063 15 C 0.024 3.976 16 H 0.118 0.882 17 C -0.212 4.212 18 C 0.015 3.985 19 N -0.373 5.373 20 C -0.373 4.373 21 H 0.086 0.914 22 C -0.209 4.209 23 N -0.576 5.576 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.214 1.214 28 C -0.147 4.147 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.046 0.954 47 H 0.221 0.779 48 H 0.065 0.935 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.928 -15.964 11.732 21.339 hybrid contribution 0.055 1.268 0.265 1.297 sum -7.873 -14.696 11.997 20.539 Atomic orbital electron populations 1.23037 0.78512 1.03830 1.01334 1.86064 1.21282 1.26967 1.88944 1.18934 0.92199 0.84155 0.97307 1.21250 0.99938 0.92466 1.08505 1.20944 0.94531 0.97076 0.97613 1.21077 0.93786 0.98369 1.01474 1.19321 0.94217 0.92542 0.98695 1.21348 0.90314 1.01221 0.84688 1.88114 1.19182 1.95146 1.24638 1.22254 0.83265 1.02196 0.95472 1.20038 0.82431 0.76676 0.90278 1.90721 1.48718 1.48130 1.51647 1.47580 1.05288 1.73351 1.07062 1.21722 0.92722 1.00630 0.91228 1.21382 0.99599 0.95309 0.81339 0.88179 1.22045 0.99614 0.97567 1.01997 1.21006 0.93724 0.86473 0.97308 1.42306 1.19822 1.00484 1.74646 1.19154 1.00554 0.83357 1.34232 0.91367 1.24753 0.96603 0.97755 1.01799 1.69684 1.10914 1.29645 1.47353 0.86294 0.77522 0.84757 0.77725 1.21326 1.21743 1.21392 1.20271 0.91337 0.98143 1.04959 0.92613 0.88323 0.92745 0.85541 0.85481 0.85278 0.91723 0.92231 0.89821 0.90796 0.93244 0.90177 0.91469 0.91429 0.92421 0.92672 0.96191 0.95425 0.77903 0.93517 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.60 10.50 -19.44 -0.20 -3.80 16 3 C 0.12 1.46 6.69 -39.22 -0.26 1.20 16 4 C -0.20 -2.22 9.04 -39.43 -0.36 -2.58 16 5 C -0.08 -0.95 10.04 -39.60 -0.40 -1.34 16 6 C -0.13 -1.65 9.70 -39.56 -0.38 -2.03 16 7 C -0.05 -0.63 5.51 -104.65 -0.58 -1.20 16 8 C 0.10 1.26 6.06 36.01 0.22 1.48 16 9 O -0.35 -5.96 9.86 -55.14 -0.54 -6.51 16 10 C 0.05 0.72 4.97 36.01 0.18 0.90 16 11 C 0.52 9.89 7.45 -10.99 -0.08 9.81 16 12 O -0.52 -12.27 15.83 -14.36 -0.23 -12.50 16 13 N -0.60 -10.09 2.24 -173.93 -0.39 -10.48 16 14 C 0.08 1.04 9.30 59.85 0.56 1.60 16 15 C 0.13 2.23 2.80 -67.93 -0.19 2.04 16 16 H 0.10 2.04 6.90 -51.93 -0.36 1.68 16 17 C -0.15 -2.01 9.19 37.16 0.34 -1.66 16 18 C 0.14 2.93 5.50 -4.04 -0.02 2.91 16 19 N -0.73 -19.10 5.43 -59.91 -0.33 -19.42 16 20 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -28.96 13.06 55.49 0.72 -28.24 16 24 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 C -0.13 -1.65 9.64 -39.44 -0.38 -2.03 16 29 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.31 7.67 -51.93 -0.40 -0.09 16 32 H 0.13 1.05 6.30 -52.49 -0.33 0.72 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 36 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 37 H 0.08 1.18 7.40 -51.93 -0.38 0.80 16 38 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 1.10 6.53 -51.93 -0.34 0.76 16 41 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.02 0.39 6.88 -51.93 -0.36 0.04 16 46 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 47 H 0.39 11.09 7.06 -40.82 -0.29 10.80 16 48 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 49 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 404.80 15.07 6.10 6.10 Total: -1.00 -37.41 404.80 -8.28 -45.69 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -7.78 Total: 8.67 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -0.61 Total: 2.74 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.01 Total: -58.14 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.97 Total: -22.81 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.41 -8.28 -45.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753699671.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.378 kcal (2) G-P(sol) polarization free energy of solvation -37.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds