Wall clock time and date at job start Sat Apr 11 2020 04:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 O 1.42904 * 109.47174 * 270.02344 * 8 7 6 10 10 C 1.42894 * 113.99876 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.47119 * 179.97438 * 10 9 8 12 12 O 1.21289 * 119.99694 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00371 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99884 * 0.02562 * 13 11 10 15 15 C 1.46495 * 120.00230 * 179.97438 * 13 11 10 16 16 H 1.08998 * 109.47233 * 0.02562 * 15 13 11 17 17 C 1.53006 * 109.47409 * 240.00179 * 15 13 11 18 18 C 1.52997 * 109.47035 * 120.00395 * 15 13 11 19 19 N 1.46501 * 109.47297 * 304.99911 * 18 15 13 20 20 C 1.36930 * 120.00411 * 179.97438 * 19 18 15 21 21 H 1.08001 * 119.99563 * 0.02562 * 20 19 18 22 22 C 1.38808 * 120.00271 * 179.97438 * 20 19 18 23 23 N 1.31615 * 120.00011 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00043 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47054 * 60.00453 * 24 22 20 26 26 H 1.48499 * 109.47080 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47585 * 300.00326 * 24 22 20 28 28 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 29 29 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 30 30 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 32 32 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 33 33 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 34 34 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 35 35 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 36 36 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 37 37 H 1.09005 * 109.47094 * 299.99472 * 10 9 8 38 38 H 1.08996 * 109.47524 * 59.99784 * 10 9 8 39 39 H 1.08997 * 109.47558 * 89.99396 * 14 13 11 40 40 H 1.08997 * 109.46905 * 209.99861 * 14 13 11 41 41 H 1.09005 * 109.46859 * 329.98990 * 14 13 11 42 42 H 1.08993 * 109.47126 * 179.97438 * 17 15 13 43 43 H 1.08994 * 109.47210 * 300.00550 * 17 15 13 44 44 H 1.09000 * 109.46695 * 59.99990 * 17 15 13 45 45 H 1.09003 * 109.47314 * 65.00050 * 18 15 13 46 46 H 1.09008 * 109.47208 * 184.99996 * 18 15 13 47 47 H 0.96997 * 119.99548 * 0.02562 * 19 18 15 48 48 H 0.96999 * 120.00135 * 179.97438 * 23 22 20 49 49 H 1.08006 * 120.02917 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 8 6.0354 2.6239 -1.3486 10 6 7.4578 2.7000 -1.4625 11 6 7.8448 2.7204 -2.9188 12 8 6.9870 2.6738 -3.7749 13 7 9.1441 2.7903 -3.2699 14 6 10.1804 2.8460 -2.2358 15 6 9.5204 2.8096 -4.6856 16 1 8.6220 2.7610 -5.3010 17 6 10.4148 1.6066 -4.9921 18 6 10.2800 4.1014 -4.9939 19 7 9.4697 5.2528 -4.5892 20 6 9.9475 6.5234 -4.7688 21 1 10.9216 6.6767 -5.2093 22 6 9.1795 7.6144 -4.3858 23 7 7.9922 7.4276 -3.8495 24 14 9.8317 9.3477 -4.6302 25 1 10.0903 9.5802 -6.0739 26 1 8.8281 10.3276 -4.1426 27 1 11.0954 9.5133 -3.8680 28 6 3.4311 1.2849 -0.0001 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2128 2.3203 -0.0106 33 1 1.3339 4.5114 0.0011 34 1 3.7922 4.6381 0.0002 35 1 5.8760 3.5065 0.5126 36 1 5.9718 1.7291 0.5125 37 1 7.8128 3.6102 -0.9791 38 1 7.9079 1.8328 -0.9794 39 1 10.4926 1.8337 -1.9793 40 1 11.0370 3.4067 -2.6097 41 1 9.7824 3.3393 -1.3489 42 1 10.6943 1.6206 -6.0455 43 1 11.3130 1.6555 -4.3767 44 1 9.8736 0.6862 -4.7724 45 1 11.2217 4.1090 -4.4451 46 1 10.4823 4.1575 -6.0636 47 1 8.5950 5.1151 -4.1932 48 1 7.4556 8.1900 -3.5815 49 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753699671.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:38 Heat of formation + Delta-G solvation = -92.926698 kcal Electronic energy + Delta-G solvation = -28911.672903 eV Core-core repulsion = 24839.303997 eV Total energy + Delta-G solvation = -4072.368906 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.21437 -41.02223 -39.20965 -38.14845 -37.50750 -35.82889 -33.70638 -32.88858 -31.90464 -31.39865 -29.01177 -28.16855 -27.72986 -27.36994 -26.52397 -24.49197 -23.56584 -22.46312 -22.15726 -20.14944 -19.11276 -18.99771 -18.31145 -17.59341 -17.51348 -17.11677 -16.95709 -16.87991 -16.64442 -16.61140 -15.96501 -15.53223 -15.29028 -15.16997 -14.82558 -14.58116 -14.30400 -14.03638 -13.79702 -13.68328 -13.66059 -13.31616 -13.24176 -13.14396 -13.02148 -12.89465 -12.74718 -12.73139 -12.50081 -12.38413 -12.17496 -12.00650 -11.80123 -11.75255 -11.73340 -10.96062 -10.72765 -10.71761 -9.95027 -9.56632 -9.21590 -8.99571 -7.92116 -5.22871 0.17938 0.43225 1.45404 1.49455 1.55578 1.61809 1.84385 2.32175 2.55682 2.62418 3.14988 3.39924 3.56474 3.81798 3.83786 3.91430 4.06410 4.08674 4.14413 4.18249 4.24292 4.31024 4.31970 4.34323 4.38802 4.39457 4.42495 4.48401 4.53687 4.72015 4.73469 4.76769 4.80176 4.86440 4.94863 5.01091 5.04232 5.16478 5.25634 5.31834 5.41232 5.47962 5.57712 5.65047 5.72794 6.05319 6.26776 6.41666 6.47165 7.24049 7.33123 8.09567 8.32987 9.30580 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011626 B = 0.002591 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.740672 B =10803.511982 C =12475.756860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.110 3.890 4 C -0.203 4.203 5 C -0.087 4.087 6 C -0.151 4.151 7 C -0.064 4.064 8 C 0.098 3.902 9 O -0.392 6.392 10 C 0.054 3.946 11 C 0.504 3.496 12 O -0.581 6.581 13 N -0.596 5.596 14 C 0.073 3.927 15 C 0.129 3.871 16 H 0.061 0.939 17 C -0.140 4.140 18 C 0.142 3.858 19 N -0.743 5.743 20 C -0.245 4.245 21 H 0.079 0.921 22 C -0.078 4.078 23 N -0.969 5.969 24 Si 0.976 3.024 25 H -0.280 1.280 26 H -0.298 1.298 27 H -0.272 1.272 28 C -0.146 4.146 29 H 0.061 0.939 30 H 0.120 0.880 31 H 0.069 0.931 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.042 0.958 46 H 0.028 0.972 47 H 0.370 0.630 48 H 0.249 0.751 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.180 -16.728 13.508 22.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.065 3.935 4 C -0.221 4.221 5 C -0.105 4.105 6 C -0.170 4.170 7 C -0.065 4.065 8 C 0.023 3.977 9 O -0.311 6.311 10 C -0.025 4.025 11 C 0.293 3.707 12 O -0.461 6.461 13 N -0.329 5.329 14 C -0.068 4.068 15 C 0.025 3.975 16 H 0.080 0.920 17 C -0.198 4.198 18 C 0.014 3.986 19 N -0.385 5.385 20 C -0.376 4.376 21 H 0.097 0.903 22 C -0.270 4.270 23 N -0.620 5.620 24 Si 0.805 3.195 25 H -0.207 1.207 26 H -0.225 1.225 27 H -0.198 1.198 28 C -0.165 4.165 29 H 0.079 0.921 30 H 0.138 0.862 31 H 0.087 0.913 32 H 0.172 0.828 33 H 0.167 0.833 34 H 0.145 0.855 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.138 0.862 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.046 0.954 47 H 0.202 0.798 48 H 0.058 0.942 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.520 -16.844 12.856 22.170 hybrid contribution -0.368 1.451 -0.109 1.501 sum -6.888 -15.393 12.747 21.140 Atomic orbital electron populations 1.23356 0.76357 1.05653 1.02287 1.86043 1.23580 1.26612 1.88789 1.19125 0.92315 0.85032 0.97066 1.21561 1.01332 0.91798 1.07450 1.21261 0.94193 0.98303 0.96768 1.21269 0.94810 0.98330 1.02560 1.19518 0.94838 0.92862 0.99239 1.21555 0.90070 1.02992 0.83118 1.88063 1.20242 1.95491 1.27348 1.22320 0.82988 1.04462 0.92749 1.20902 0.82502 0.75639 0.91681 1.90679 1.50519 1.51284 1.53584 1.47738 1.05649 1.71969 1.07556 1.22023 0.91230 1.03296 0.90299 1.21270 0.98516 0.95951 0.81747 0.92040 1.21945 0.99373 0.95243 1.03245 1.21221 0.94037 0.85964 0.97333 1.42536 1.19748 1.01558 1.74693 1.19618 1.00702 0.84483 1.32835 0.90283 1.25631 0.96986 1.01987 1.02405 1.69882 1.12499 1.30321 1.49285 0.85175 0.77057 0.79447 0.77814 1.20673 1.22479 1.19792 1.20444 0.92126 0.98234 1.05682 0.92076 0.86225 0.91277 0.82836 0.83270 0.85527 0.90712 0.89425 0.89100 0.86250 0.89050 0.90805 0.90493 0.90291 0.90048 0.91921 0.94025 0.95373 0.79819 0.94236 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.37 10.50 -92.48 -0.97 -8.34 16 3 C 0.11 2.67 6.69 22.50 0.15 2.82 16 4 C -0.20 -4.27 9.04 22.37 0.20 -4.07 16 5 C -0.09 -1.95 10.04 22.26 0.22 -1.73 16 6 C -0.15 -3.99 9.70 22.28 0.22 -3.78 16 7 C -0.06 -1.74 5.51 -19.88 -0.11 -1.85 16 8 C 0.10 2.45 6.06 71.24 0.43 2.88 16 9 O -0.39 -13.54 9.86 -129.94 -1.28 -14.82 16 10 C 0.05 1.58 4.97 71.24 0.35 1.94 16 11 C 0.50 19.59 7.45 87.66 0.65 20.25 16 12 O -0.58 -29.19 15.83 15.98 0.25 -28.93 16 13 N -0.60 -19.73 2.24 -822.59 -1.85 -21.58 16 14 C 0.07 1.70 9.30 127.77 1.19 2.89 16 15 C 0.13 4.51 2.80 44.99 0.13 4.64 16 16 H 0.06 2.64 6.90 -2.39 -0.02 2.62 16 17 C -0.14 -3.33 9.19 71.98 0.66 -2.66 16 18 C 0.14 5.71 5.50 86.38 0.48 6.18 16 19 N -0.74 -39.51 5.43 -343.45 -1.87 -41.37 16 20 C -0.24 -13.97 9.99 84.03 0.84 -13.13 16 21 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 22 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 23 N -0.97 -62.14 13.06 21.65 0.28 -61.86 16 24 Si 0.98 47.11 29.55 68.60 2.03 49.14 16 25 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 26 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 27 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 28 C -0.15 -3.83 9.64 22.36 0.22 -3.61 16 29 H 0.06 0.69 7.65 -2.39 -0.02 0.67 16 30 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.65 7.67 -2.39 -0.02 0.63 16 32 H 0.15 2.26 6.30 -2.91 -0.02 2.24 16 33 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.07 1.65 8.09 -2.39 -0.02 1.63 16 36 H 0.09 1.62 8.08 -2.39 -0.02 1.60 16 37 H 0.09 2.51 7.40 -2.38 -0.02 2.49 16 38 H 0.12 2.34 8.11 -2.39 -0.02 2.32 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 1.83 6.53 -2.39 -0.02 1.81 16 41 H 0.08 1.65 6.44 -2.38 -0.02 1.63 16 42 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.08 1.57 7.67 -2.39 -0.02 1.55 16 44 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.04 1.53 6.88 -2.39 -0.02 1.51 16 46 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.37 22.00 7.06 -92.71 -0.65 21.34 16 48 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 49 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -85.38 404.80 4.10 -81.28 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: 0.29 Total: 38.54 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 7.21 Total: 7.93 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -3.43 Total: -124.81 kcal Atomic # 8 Polarization: -50.09 SS G_CDS: -2.00 Total: -52.09 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -85.38 4.10 -81.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753699671.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.646 kcal (2) G-P(sol) polarization free energy of solvation -85.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds