Wall clock time and date at job start Sat Apr 11 2020 04:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 117.00041 * 2 1 4 4 C 1.38751 * 120.05759 * 0.02562 * 3 2 1 5 5 C 1.38114 * 119.94576 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05666 * 359.74657 * 5 4 3 7 7 C 1.38242 * 120.10673 * 0.51351 * 6 5 4 8 8 C 1.50708 * 119.96957 * 179.76564 * 7 6 5 9 9 O 1.42901 * 109.46875 * 269.72040 * 8 7 6 10 10 C 1.42899 * 113.99607 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46876 * 179.97438 * 10 9 8 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46506 * 120.00264 * 0.28128 * 13 11 10 15 15 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 16 16 H 1.09005 * 109.47049 * 0.02562 * 15 13 11 17 17 C 1.53000 * 109.47264 * 120.00374 * 15 13 11 18 18 C 1.53000 * 109.47359 * 240.00361 * 15 13 11 19 19 N 1.46498 * 109.46946 * 55.00072 * 18 15 13 20 20 C 1.36941 * 119.99685 * 180.02562 * 19 18 15 21 21 H 1.07998 * 120.00213 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99909 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00086 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00183 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47053 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46907 * 119.99790 * 24 22 20 27 27 H 1.48502 * 109.47469 * 240.00060 * 24 22 20 28 28 C 1.38159 * 120.05898 * 359.48503 * 7 6 5 29 29 H 1.09003 * 109.47597 * 300.00615 * 1 2 3 30 30 H 1.09000 * 109.46700 * 60.00901 * 1 2 3 31 31 H 1.09007 * 109.47401 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.02641 * 359.96373 * 4 3 2 33 33 H 1.08003 * 119.97257 * 180.02562 * 5 4 3 34 34 H 1.07995 * 119.94413 * 180.27360 * 6 5 4 35 35 H 1.09003 * 109.47255 * 149.72168 * 8 7 6 36 36 H 1.09001 * 109.46743 * 29.71812 * 8 7 6 37 37 H 1.09004 * 109.47206 * 60.00168 * 10 9 8 38 38 H 1.08994 * 109.47548 * 299.99825 * 10 9 8 39 39 H 1.08998 * 109.46921 * 89.99095 * 14 13 11 40 40 H 1.08994 * 109.46996 * 209.99677 * 14 13 11 41 41 H 1.09001 * 109.46578 * 329.99540 * 14 13 11 42 42 H 1.08995 * 109.47131 * 60.00106 * 17 15 13 43 43 H 1.08998 * 109.47544 * 180.02562 * 17 15 13 44 44 H 1.09007 * 109.46721 * 300.00461 * 17 15 13 45 45 H 1.09002 * 109.46979 * 174.99802 * 18 15 13 46 46 H 1.09001 * 109.47089 * 294.99626 * 18 15 13 47 47 H 0.96994 * 120.00525 * 359.97438 * 19 18 15 48 48 H 0.97001 * 119.99902 * 180.02562 * 23 22 20 49 49 H 1.08001 * 120.02776 * 180.23540 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0064 7 6 4.0559 2.5170 0.0004 8 6 5.5608 2.5981 0.0009 9 8 6.0368 2.6241 -1.3463 10 6 7.4593 2.7013 -1.4587 11 6 7.8477 2.7219 -2.9146 12 8 6.9908 2.6756 -3.7716 13 7 9.1471 2.7980 -3.2644 14 6 10.1823 2.8545 -2.2292 15 6 9.5244 2.8241 -4.6797 16 1 8.6267 2.7746 -5.2960 17 6 10.2795 4.1199 -4.9824 18 6 10.4234 1.6256 -4.9901 19 7 9.7459 0.3902 -4.5889 20 6 10.3626 -0.8189 -4.7709 21 1 11.3480 -0.8617 -5.2106 22 6 9.7209 -1.9895 -4.3903 23 7 8.5201 -1.9372 -3.8540 24 14 10.5616 -3.6389 -4.6392 25 1 11.8958 -3.4263 -5.2557 26 1 10.7252 -4.3141 -3.3267 27 1 9.7326 -4.4873 -5.5326 28 6 3.4311 1.2848 -0.0001 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 0.2128 2.3204 0.0004 33 1 1.3340 4.5113 0.0019 34 1 3.7922 4.6380 0.0112 35 1 5.9714 1.7288 0.5146 36 1 5.8756 3.5062 0.5150 37 1 7.9096 1.8344 -0.9751 38 1 7.8131 3.6117 -0.9750 39 1 10.4981 1.8425 -1.9756 40 1 11.0371 3.4196 -2.6007 41 1 9.7817 3.3433 -1.3411 42 1 11.1771 4.1698 -4.3661 43 1 10.5599 4.1396 -6.0355 44 1 9.6390 4.9738 -4.7612 45 1 10.6316 1.5950 -6.0596 46 1 11.3597 1.7217 -4.4403 47 1 8.8610 0.4287 -4.1936 48 1 8.0719 -2.7552 -3.5877 49 1 4.0207 0.3799 -0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753699672.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:42 Heat of formation + Delta-G solvation = -67.631511 kcal Electronic energy + Delta-G solvation = -28974.771503 eV Core-core repulsion = 24903.499479 eV Total energy + Delta-G solvation = -4071.272024 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.27405 -39.70084 -38.18369 -37.04904 -36.03247 -33.95702 -32.20569 -31.77754 -30.54885 -30.07973 -27.91856 -27.40805 -26.61764 -25.66421 -25.41467 -22.66743 -22.58312 -21.29376 -20.97712 -18.74982 -18.06751 -17.10067 -17.01962 -16.59291 -16.28105 -16.16655 -15.87126 -15.82516 -15.61925 -14.74761 -14.71309 -14.35243 -13.87541 -13.67716 -13.57227 -13.20418 -13.15692 -12.82300 -12.80686 -12.43582 -12.34784 -12.23885 -12.03782 -11.98736 -11.86759 -11.75006 -11.49269 -11.40829 -11.20835 -10.89125 -10.82157 -10.73069 -10.40213 -9.97606 -9.66042 -9.64230 -9.29847 -9.00962 -8.82471 -8.30792 -8.20016 -6.84650 -5.67714 -2.97638 1.10388 1.35499 2.96432 3.08104 3.15834 3.46686 3.51772 3.54712 3.60652 4.17709 4.62275 4.63311 4.67189 4.84918 4.88098 4.93708 4.96923 5.08152 5.10201 5.19198 5.25681 5.27287 5.29787 5.36691 5.43020 5.44493 5.47867 5.58132 5.59790 5.65143 5.72491 5.91082 5.99256 6.12822 6.15226 6.16764 6.22775 6.28075 6.42071 6.47759 6.51857 6.61288 6.77904 6.96094 7.16490 7.27353 7.75043 7.77831 8.49337 8.63635 9.60714 10.19960 10.55203 11.54161 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009627 B = 0.002883 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2907.833192 B = 9708.906034 C =11961.226412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.123 3.877 4 C -0.204 4.204 5 C -0.086 4.086 6 C -0.135 4.135 7 C -0.047 4.047 8 C 0.101 3.899 9 O -0.353 6.353 10 C 0.048 3.952 11 C 0.519 3.481 12 O -0.518 6.518 13 N -0.598 5.598 14 C 0.078 3.922 15 C 0.127 3.873 16 H 0.100 0.900 17 C -0.155 4.155 18 C 0.144 3.856 19 N -0.728 5.728 20 C -0.241 4.241 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.927 5.927 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.125 4.125 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.027 0.973 46 H 0.020 0.980 47 H 0.387 0.613 48 H 0.254 0.746 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.208 14.816 12.426 21.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.078 3.922 4 C -0.223 4.223 5 C -0.104 4.104 6 C -0.153 4.153 7 C -0.047 4.047 8 C 0.024 3.976 9 O -0.271 6.271 10 C -0.032 4.032 11 C 0.306 3.694 12 O -0.392 6.392 13 N -0.333 5.333 14 C -0.065 4.065 15 C 0.024 3.976 16 H 0.118 0.882 17 C -0.213 4.213 18 C 0.016 3.984 19 N -0.373 5.373 20 C -0.372 4.372 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.575 5.575 24 Si 0.736 3.264 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.219 1.219 28 C -0.143 4.143 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.045 0.955 46 H 0.038 0.962 47 H 0.221 0.779 48 H 0.064 0.936 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.603 14.459 11.758 20.965 hybrid contribution 0.161 -0.934 0.269 0.985 sum -9.443 13.525 12.027 20.414 Atomic orbital electron populations 1.23048 0.78517 1.03962 1.01181 1.86108 1.21263 1.26824 1.88702 1.18974 0.92232 0.84237 0.96734 1.21241 0.99935 0.92462 1.08649 1.20878 0.94449 0.96965 0.98125 1.20952 0.93739 0.97939 1.02668 1.19311 0.94193 0.92544 0.98671 1.21349 0.90351 1.01182 0.84700 1.88115 1.19136 1.95171 1.24656 1.22257 0.83349 1.02103 0.95484 1.20020 0.82447 0.76678 0.90274 1.90720 1.48931 1.48034 1.51563 1.47581 1.05259 1.73424 1.07059 1.21758 0.91746 1.02701 0.90336 1.21381 0.99842 0.95052 0.81346 0.88179 1.22061 1.00269 0.96969 1.02037 1.20997 0.93962 0.86181 0.97280 1.42321 1.19966 1.00283 1.74732 1.19242 0.99642 0.84221 1.34106 0.91273 1.24759 0.96697 0.97668 1.01812 1.69706 1.13553 1.26781 1.47476 0.86154 0.78399 0.84622 0.77214 1.20651 1.21966 1.21896 1.20391 0.91479 0.98511 1.03959 0.92809 0.92630 0.88227 0.85544 0.85687 0.85744 0.91820 0.92141 0.89818 0.90812 0.91523 0.91055 0.91973 0.92373 0.91369 0.92636 0.95505 0.96222 0.77909 0.93588 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.32 -4.02 10.50 -19.42 -0.20 -4.22 16 3 C 0.12 1.62 6.69 -39.22 -0.26 1.36 16 4 C -0.20 -2.23 9.04 -39.44 -0.36 -2.59 16 5 C -0.09 -0.90 10.04 -39.61 -0.40 -1.30 16 6 C -0.13 -1.55 9.70 -39.56 -0.38 -1.94 16 7 C -0.05 -0.62 5.51 -104.65 -0.58 -1.20 16 8 C 0.10 1.26 6.06 36.01 0.22 1.48 16 9 O -0.35 -5.96 9.86 -55.14 -0.54 -6.51 16 10 C 0.05 0.72 4.97 36.01 0.18 0.90 16 11 C 0.52 9.90 7.45 -10.98 -0.08 9.81 16 12 O -0.52 -12.29 15.83 -14.35 -0.23 -12.51 16 13 N -0.60 -10.09 2.24 -173.93 -0.39 -10.48 16 14 C 0.08 1.00 9.41 59.85 0.56 1.57 16 15 C 0.13 2.23 2.80 -67.93 -0.19 2.04 16 16 H 0.10 2.04 6.90 -51.93 -0.36 1.68 16 17 C -0.15 -2.00 9.17 37.16 0.34 -1.66 16 18 C 0.14 2.97 5.55 -4.04 -0.02 2.95 16 19 N -0.73 -19.24 5.43 -59.91 -0.33 -19.57 16 20 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -29.23 13.06 55.49 0.72 -28.51 16 24 Si 0.90 22.94 29.55 -169.99 -5.02 17.92 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 28 C -0.12 -1.76 9.64 -39.43 -0.38 -2.14 16 29 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 30 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.13 1.05 6.30 -52.49 -0.33 0.72 16 33 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 36 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 37 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 38 H 0.07 0.81 7.40 -51.93 -0.38 0.42 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 41 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 42 H 0.06 0.66 6.66 -51.93 -0.35 0.32 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.39 7.84 -51.93 -0.41 -0.02 16 47 H 0.39 11.17 7.06 -40.82 -0.29 10.88 16 48 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 49 H 0.14 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 404.77 15.07 6.10 6.10 Total: -1.00 -37.93 404.77 -8.26 -46.19 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -7.77 Total: 8.64 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.60 Total: 2.94 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.01 Total: -58.56 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.97 Total: -23.24 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.93 -8.26 -46.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753699672.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.438 kcal (2) G-P(sol) polarization free energy of solvation -37.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds