Wall clock time and date at job start Sat Apr 11 2020 04:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 117.00041 * 2 1 4 4 C 1.38751 * 120.05759 * 0.02562 * 3 2 1 5 5 C 1.38114 * 119.94576 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05666 * 359.74657 * 5 4 3 7 7 C 1.38242 * 120.10673 * 0.51351 * 6 5 4 8 8 C 1.50708 * 119.96957 * 179.76564 * 7 6 5 9 9 O 1.42901 * 109.46875 * 269.72040 * 8 7 6 10 10 C 1.42899 * 113.99607 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46876 * 179.97438 * 10 9 8 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46506 * 120.00264 * 0.28128 * 13 11 10 15 15 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 16 16 H 1.09005 * 109.47049 * 0.02562 * 15 13 11 17 17 C 1.53000 * 109.47264 * 120.00374 * 15 13 11 18 18 C 1.53000 * 109.47359 * 240.00361 * 15 13 11 19 19 N 1.46498 * 109.46946 * 55.00072 * 18 15 13 20 20 C 1.36941 * 119.99685 * 180.02562 * 19 18 15 21 21 H 1.07998 * 120.00213 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99909 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00086 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00183 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47053 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46907 * 119.99790 * 24 22 20 27 27 H 1.48502 * 109.47469 * 240.00060 * 24 22 20 28 28 C 1.38159 * 120.05898 * 359.48503 * 7 6 5 29 29 H 1.09003 * 109.47597 * 300.00615 * 1 2 3 30 30 H 1.09000 * 109.46700 * 60.00901 * 1 2 3 31 31 H 1.09007 * 109.47401 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.02641 * 359.96373 * 4 3 2 33 33 H 1.08003 * 119.97257 * 180.02562 * 5 4 3 34 34 H 1.07995 * 119.94413 * 180.27360 * 6 5 4 35 35 H 1.09003 * 109.47255 * 149.72168 * 8 7 6 36 36 H 1.09001 * 109.46743 * 29.71812 * 8 7 6 37 37 H 1.09004 * 109.47206 * 60.00168 * 10 9 8 38 38 H 1.08994 * 109.47548 * 299.99825 * 10 9 8 39 39 H 1.08998 * 109.46921 * 89.99095 * 14 13 11 40 40 H 1.08994 * 109.46996 * 209.99677 * 14 13 11 41 41 H 1.09001 * 109.46578 * 329.99540 * 14 13 11 42 42 H 1.08995 * 109.47131 * 60.00106 * 17 15 13 43 43 H 1.08998 * 109.47544 * 180.02562 * 17 15 13 44 44 H 1.09007 * 109.46721 * 300.00461 * 17 15 13 45 45 H 1.09002 * 109.46979 * 174.99802 * 18 15 13 46 46 H 1.09001 * 109.47089 * 294.99626 * 18 15 13 47 47 H 0.96994 * 120.00525 * 359.97438 * 19 18 15 48 48 H 0.97001 * 119.99902 * 180.02562 * 23 22 20 49 49 H 1.08001 * 120.02776 * 180.23540 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0064 7 6 4.0559 2.5170 0.0004 8 6 5.5608 2.5981 0.0009 9 8 6.0368 2.6241 -1.3463 10 6 7.4593 2.7013 -1.4587 11 6 7.8477 2.7219 -2.9146 12 8 6.9908 2.6756 -3.7716 13 7 9.1471 2.7980 -3.2644 14 6 10.1823 2.8545 -2.2292 15 6 9.5244 2.8241 -4.6797 16 1 8.6267 2.7746 -5.2960 17 6 10.2795 4.1199 -4.9824 18 6 10.4234 1.6256 -4.9901 19 7 9.7459 0.3902 -4.5889 20 6 10.3626 -0.8189 -4.7709 21 1 11.3480 -0.8617 -5.2106 22 6 9.7209 -1.9895 -4.3903 23 7 8.5201 -1.9372 -3.8540 24 14 10.5616 -3.6389 -4.6392 25 1 11.8958 -3.4263 -5.2557 26 1 10.7252 -4.3141 -3.3267 27 1 9.7326 -4.4873 -5.5326 28 6 3.4311 1.2848 -0.0001 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 0.2128 2.3204 0.0004 33 1 1.3340 4.5113 0.0019 34 1 3.7922 4.6380 0.0112 35 1 5.9714 1.7288 0.5146 36 1 5.8756 3.5062 0.5150 37 1 7.9096 1.8344 -0.9751 38 1 7.8131 3.6117 -0.9750 39 1 10.4981 1.8425 -1.9756 40 1 11.0371 3.4196 -2.6007 41 1 9.7817 3.3433 -1.3411 42 1 11.1771 4.1698 -4.3661 43 1 10.5599 4.1396 -6.0355 44 1 9.6390 4.9738 -4.7612 45 1 10.6316 1.5950 -6.0596 46 1 11.3597 1.7217 -4.4403 47 1 8.8610 0.4287 -4.1936 48 1 8.0719 -2.7552 -3.5877 49 1 4.0207 0.3799 -0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753699672.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:41 Heat of formation + Delta-G solvation = -93.391956 kcal Electronic energy + Delta-G solvation = -28975.888560 eV Core-core repulsion = 24903.499479 eV Total energy + Delta-G solvation = -4072.389081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.21609 -41.02576 -39.21593 -38.15067 -37.50876 -35.84719 -33.71354 -32.87687 -31.91253 -31.40333 -29.00842 -28.17992 -27.77904 -27.34564 -26.52800 -24.49464 -23.55598 -22.46871 -22.15534 -20.15812 -19.11874 -19.00969 -18.31655 -17.59583 -17.52484 -17.10530 -16.97834 -16.87018 -16.65171 -16.61746 -15.93909 -15.59550 -15.24507 -15.17282 -14.82873 -14.57408 -14.32133 -14.08351 -13.84520 -13.71880 -13.66144 -13.33550 -13.21756 -13.04875 -13.01966 -12.93591 -12.81678 -12.72395 -12.48810 -12.39110 -12.09636 -12.00283 -11.80109 -11.74956 -11.70925 -11.00974 -10.75577 -10.69498 -9.94443 -9.57923 -9.20875 -9.01038 -7.93852 -5.24643 0.18739 0.44565 1.44167 1.46409 1.56402 1.60917 1.84860 2.33205 2.54458 2.63205 3.14785 3.38894 3.56027 3.82622 3.83823 3.91031 4.03999 4.09392 4.12041 4.18244 4.26011 4.30864 4.33945 4.35285 4.36725 4.38117 4.43376 4.47767 4.54118 4.69356 4.71327 4.75926 4.80859 4.87275 4.92904 5.00165 5.05394 5.17032 5.27932 5.33100 5.41622 5.47205 5.57345 5.64955 5.77337 6.05230 6.25175 6.42994 6.46727 7.23570 7.31509 8.08423 8.31233 9.29246 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009627 B = 0.002883 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2907.833192 B = 9708.906034 C =11961.226412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.344 6.344 3 C 0.106 3.894 4 C -0.203 4.203 5 C -0.083 4.083 6 C -0.141 4.141 7 C -0.065 4.065 8 C 0.098 3.902 9 O -0.392 6.392 10 C 0.053 3.947 11 C 0.504 3.496 12 O -0.581 6.581 13 N -0.595 5.595 14 C 0.072 3.928 15 C 0.128 3.872 16 H 0.061 0.939 17 C -0.141 4.141 18 C 0.142 3.858 19 N -0.744 5.744 20 C -0.242 4.242 21 H 0.080 0.920 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.976 3.024 25 H -0.261 1.261 26 H -0.292 1.292 27 H -0.298 1.298 28 C -0.160 4.160 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.147 0.853 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.125 0.875 39 H 0.042 0.958 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.029 0.971 46 H 0.041 0.959 47 H 0.370 0.630 48 H 0.248 0.752 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.058 17.098 13.487 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.258 6.258 3 C 0.061 3.939 4 C -0.222 4.222 5 C -0.101 4.101 6 C -0.159 4.159 7 C -0.065 4.065 8 C 0.022 3.978 9 O -0.311 6.311 10 C -0.026 4.026 11 C 0.293 3.707 12 O -0.460 6.460 13 N -0.329 5.329 14 C -0.069 4.069 15 C 0.025 3.975 16 H 0.080 0.920 17 C -0.199 4.199 18 C 0.015 3.985 19 N -0.386 5.386 20 C -0.373 4.373 21 H 0.098 0.902 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.805 3.195 25 H -0.185 1.185 26 H -0.219 1.219 27 H -0.226 1.226 28 C -0.179 4.179 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.172 0.828 33 H 0.178 0.822 34 H 0.164 0.836 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.142 0.858 39 H 0.061 0.939 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.046 0.954 46 H 0.059 0.941 47 H 0.201 0.799 48 H 0.057 0.943 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.371 16.778 12.825 22.717 hybrid contribution -0.212 -1.602 -0.086 1.618 sum -8.583 15.176 12.739 21.593 Atomic orbital electron populations 1.23354 0.76262 1.05512 1.02441 1.86066 1.23760 1.27187 1.88822 1.19187 0.92176 0.85278 0.97265 1.21586 1.01286 0.91815 1.07484 1.21341 0.94385 0.98039 0.96308 1.21288 0.94453 0.98126 1.02024 1.19540 0.94880 0.92816 0.99259 1.21569 0.90059 1.03025 0.83115 1.88064 1.20128 1.95559 1.27386 1.22327 0.82949 1.04538 0.92753 1.20906 0.82577 0.75555 0.91694 1.90677 1.50764 1.51084 1.53508 1.47740 1.05588 1.71994 1.07569 1.22030 0.91803 1.02218 0.90862 1.21285 0.98196 0.96304 0.81763 0.92033 1.21963 1.00558 0.94051 1.03312 1.21224 0.94802 0.85145 0.97333 1.42565 1.19537 1.01767 1.74755 1.19700 0.99826 0.85253 1.32555 0.90180 1.25645 0.97461 1.01576 1.02455 1.69904 1.15493 1.27243 1.49529 0.85034 0.77942 0.79663 0.76857 1.18541 1.21882 1.22582 1.20492 0.92458 0.98514 1.06398 0.90909 0.91851 0.86722 0.82789 0.82222 0.83555 0.91709 0.88471 0.89569 0.85750 0.93901 0.88336 0.88116 0.89899 0.90228 0.91732 0.95362 0.94139 0.79880 0.94315 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.40 16 2 O -0.34 -9.16 10.50 -92.42 -0.97 -10.13 16 3 C 0.11 2.90 6.69 22.51 0.15 3.05 16 4 C -0.20 -4.22 9.04 22.36 0.20 -4.02 16 5 C -0.08 -1.56 10.04 22.25 0.22 -1.34 16 6 C -0.14 -3.07 9.70 22.28 0.22 -2.86 16 7 C -0.06 -1.75 5.51 -19.88 -0.11 -1.86 16 8 C 0.10 2.44 6.06 71.24 0.43 2.88 16 9 O -0.39 -13.54 9.86 -129.94 -1.28 -14.82 16 10 C 0.05 1.57 4.97 71.24 0.35 1.92 16 11 C 0.50 19.61 7.45 87.66 0.65 20.27 16 12 O -0.58 -29.19 15.83 16.00 0.25 -28.94 16 13 N -0.60 -19.75 2.24 -822.58 -1.85 -21.59 16 14 C 0.07 1.69 9.41 127.77 1.20 2.89 16 15 C 0.13 4.48 2.80 44.99 0.13 4.61 16 16 H 0.06 2.64 6.90 -2.38 -0.02 2.62 16 17 C -0.14 -3.27 9.17 71.98 0.66 -2.61 16 18 C 0.14 5.77 5.55 86.38 0.48 6.25 16 19 N -0.74 -40.08 5.43 -343.45 -1.87 -41.95 16 20 C -0.24 -13.97 9.99 84.03 0.84 -13.13 16 21 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 22 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 23 N -0.97 -63.50 13.06 21.65 0.28 -63.22 16 24 Si 0.98 47.87 29.55 68.60 2.03 49.90 16 25 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 27 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 28 C -0.16 -4.88 9.64 22.36 0.22 -4.66 16 29 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 30 H 0.06 0.86 7.66 -2.39 -0.02 0.85 16 31 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.15 2.21 6.30 -2.91 -0.02 2.19 16 33 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 34 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 36 H 0.10 1.64 8.08 -2.39 -0.02 1.62 16 37 H 0.09 2.46 8.11 -2.38 -0.02 2.44 16 38 H 0.13 2.31 7.40 -2.39 -0.02 2.29 16 39 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.10 1.76 6.43 -2.39 -0.02 1.74 16 41 H 0.10 1.56 6.43 -2.39 -0.02 1.55 16 42 H 0.08 1.53 6.66 -2.39 -0.02 1.52 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 46 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 47 H 0.37 22.30 7.06 -92.71 -0.65 21.64 16 48 H 0.25 15.76 8.31 -92.71 -0.77 14.99 16 49 H 0.11 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -88.75 404.77 4.12 -84.63 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: 0.29 Total: 37.65 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 7.22 Total: 8.47 kcal Atomic # 7 Polarization: -123.33 SS G_CDS: -3.43 Total: -126.76 kcal Atomic # 8 Polarization: -51.90 SS G_CDS: -2.00 Total: -53.89 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -88.75 4.12 -84.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753699672.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.758 kcal (2) G-P(sol) polarization free energy of solvation -88.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds