Wall clock time and date at job start Sat Apr 11 2020 04:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 116.99848 * 2 1 4 4 C 1.38756 * 120.05699 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94525 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05605 * 359.74450 * 5 4 3 7 7 C 1.38250 * 120.11019 * 0.50990 * 6 5 4 8 8 C 1.50703 * 119.97023 * 179.76370 * 7 6 5 9 9 H 1.08997 * 109.46712 * 159.72312 * 8 7 6 10 10 O 1.42901 * 109.46693 * 39.72813 * 8 7 6 11 11 C 1.42910 * 113.99730 * 149.99934 * 10 8 7 12 12 C 1.50697 * 109.47105 * 279.72572 * 8 7 6 13 13 O 1.21290 * 119.99959 * 115.00208 * 12 8 7 14 14 N 1.34770 * 120.00173 * 294.99895 * 12 8 7 15 15 C 1.46496 * 120.00190 * 180.27725 * 14 12 8 16 16 H 1.09007 * 109.47383 * 34.72557 * 15 14 12 17 17 C 1.52999 * 109.47176 * 274.72665 * 15 14 12 18 18 C 1.52998 * 109.47611 * 154.72531 * 15 14 12 19 19 N 1.46499 * 109.46765 * 305.00427 * 18 15 14 20 20 C 1.46506 * 119.99708 * 269.99261 * 19 18 15 21 21 C 1.36939 * 120.00376 * 90.00027 * 19 18 15 22 22 H 1.07997 * 119.99774 * 22.33050 * 21 19 18 23 23 C 1.38816 * 119.99776 * 202.33433 * 21 19 18 24 24 N 1.31612 * 120.00352 * 11.36455 * 23 21 19 25 25 Si 1.86799 * 119.99408 * 191.36694 * 23 21 19 26 26 H 1.48500 * 109.47473 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47050 * 120.00109 * 25 23 21 28 28 H 1.48502 * 109.46861 * 239.99710 * 25 23 21 29 29 C 1.38164 * 120.05285 * 359.49114 * 7 6 5 30 30 H 1.08998 * 109.47150 * 300.00214 * 1 2 3 31 31 H 1.09002 * 109.47131 * 60.00497 * 1 2 3 32 32 H 1.08997 * 109.46690 * 179.97438 * 1 2 3 33 33 H 1.08009 * 120.02534 * 0.02562 * 4 3 2 34 34 H 1.08010 * 119.97052 * 180.02562 * 5 4 3 35 35 H 1.08005 * 119.94391 * 180.27604 * 6 5 4 36 36 H 1.08997 * 109.46656 * 299.99560 * 11 10 8 37 37 H 1.09003 * 109.46574 * 59.99372 * 11 10 8 38 38 H 1.08994 * 109.46703 * 179.97438 * 11 10 8 39 39 H 0.96997 * 120.00168 * 0.02562 * 14 12 8 40 40 H 1.09004 * 109.47461 * 59.99755 * 17 15 14 41 41 H 1.09000 * 109.47185 * 179.97438 * 17 15 14 42 42 H 1.08998 * 109.47254 * 299.99730 * 17 15 14 43 43 H 1.08998 * 109.47120 * 64.99908 * 18 15 14 44 44 H 1.09000 * 109.47450 * 185.00220 * 18 15 14 45 45 H 1.08998 * 109.46765 * 94.23333 * 20 19 18 46 46 H 1.08996 * 109.47088 * 214.22574 * 20 19 18 47 47 H 1.08991 * 109.47263 * 334.22666 * 20 19 18 48 48 H 0.96999 * 119.99999 * 180.02562 * 24 23 21 49 49 H 1.07997 * 120.02211 * 180.27239 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6759 0.0064 7 6 4.0559 2.5172 0.0006 8 6 5.5607 2.5983 0.0010 9 1 5.9754 1.6535 0.3524 10 8 5.9805 3.6543 0.8675 11 6 7.2537 3.4339 1.4779 12 6 6.0495 2.8721 -1.3979 13 8 6.6149 3.9153 -1.6495 14 7 5.8583 1.9579 -2.3695 15 6 6.3388 2.2215 -3.7281 16 1 7.2692 2.7875 -3.6811 17 6 5.2884 3.0295 -4.4928 18 6 6.5851 0.8944 -4.4485 19 7 7.5002 0.0705 -3.6548 20 6 8.9465 0.1716 -3.8654 21 6 7.0037 -0.7943 -2.7162 22 1 5.9850 -1.1452 -2.7905 23 6 7.8098 -1.2198 -1.6693 24 7 8.9654 -0.6303 -1.4468 25 14 7.2545 -2.6291 -0.5762 26 1 5.9280 -3.1164 -1.0324 27 1 8.2424 -3.7351 -0.6543 28 1 7.1514 -2.1557 0.8276 29 6 3.4310 1.2849 0.0000 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 0.2127 2.3203 0.0014 34 1 1.3338 4.5115 0.0019 35 1 3.7921 4.6382 0.0113 36 1 7.2173 2.5229 2.0753 37 1 8.0145 3.3309 0.7042 38 1 7.5003 4.2799 2.1194 39 1 5.4058 1.1238 -2.1685 40 1 5.1129 3.9751 -3.9796 41 1 5.6461 3.2260 -5.5035 42 1 4.3581 2.4636 -4.5399 43 1 5.6388 0.3682 -4.5743 44 1 7.0259 1.0881 -5.4264 45 1 9.3680 0.8835 -3.1558 46 1 9.4047 -0.8058 -3.7148 47 1 9.1427 0.5122 -4.8819 48 1 9.5288 -0.9279 -0.7155 49 1 4.0206 0.3801 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754317362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:45 Heat of formation + Delta-G solvation = -65.281851 kcal Electronic energy + Delta-G solvation = -31131.262302 eV Core-core repulsion = 27060.092167 eV Total energy + Delta-G solvation = -4071.170135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.34665 -39.37481 -37.67066 -36.89620 -35.99755 -33.91501 -32.26874 -31.13564 -30.43923 -29.87540 -27.55876 -27.09265 -26.17109 -25.62235 -25.48669 -22.54508 -22.12314 -21.44900 -20.27090 -19.59594 -18.06310 -17.09362 -16.66229 -16.52862 -16.06533 -15.78152 -15.63829 -15.47099 -14.98952 -14.89351 -14.19938 -13.95102 -13.81177 -13.65565 -13.50897 -13.10341 -13.00630 -12.81406 -12.69605 -12.36368 -12.17930 -11.92682 -11.83447 -11.45324 -11.37542 -11.27128 -11.15974 -11.12091 -10.88642 -10.73006 -10.68098 -10.39022 -10.28802 -10.12850 -10.02433 -9.84782 -9.17277 -8.60979 -8.55338 -8.21212 -8.15411 -6.80061 -5.76779 -3.22980 1.24906 1.49934 3.09328 3.30343 3.33693 3.40760 3.40921 3.67130 3.71032 4.34870 4.43474 4.75571 4.76490 4.98979 5.00790 5.08120 5.30205 5.31845 5.33072 5.35315 5.44397 5.51773 5.55486 5.63252 5.69163 5.72099 5.80618 5.92703 5.98571 6.02465 6.02802 6.19196 6.27883 6.28882 6.46027 6.47698 6.56398 6.60804 6.72912 6.75247 6.91285 7.22625 7.35284 7.37955 7.38074 7.69412 7.78075 8.32437 8.35097 8.97153 9.18072 9.81998 10.32274 11.27090 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008899 B = 0.005028 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.745466 B = 5567.204573 C = 6312.187361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.126 3.874 4 C -0.205 4.205 5 C -0.085 4.085 6 C -0.121 4.121 7 C -0.041 4.041 8 C 0.113 3.887 9 H 0.098 0.902 10 O -0.357 6.357 11 C 0.032 3.968 12 C 0.505 3.495 13 O -0.545 6.545 14 N -0.681 5.681 15 C 0.119 3.881 16 H 0.076 0.924 17 C -0.159 4.159 18 C 0.142 3.858 19 N -0.599 5.599 20 C 0.164 3.836 21 C -0.253 4.253 22 H 0.067 0.933 23 C 0.006 3.994 24 N -0.900 5.900 25 Si 0.891 3.109 26 H -0.276 1.276 27 H -0.289 1.289 28 H -0.290 1.290 29 C -0.136 4.136 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.403 0.597 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.027 0.973 46 H 0.044 0.956 47 H -0.004 1.004 48 H 0.251 0.749 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.301 5.165 2.447 15.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.081 3.919 4 C -0.224 4.224 5 C -0.103 4.103 6 C -0.140 4.140 7 C -0.041 4.041 8 C 0.052 3.948 9 H 0.116 0.884 10 O -0.275 6.275 11 C -0.065 4.065 12 C 0.289 3.711 13 O -0.423 6.423 14 N -0.332 5.332 15 C 0.011 3.989 16 H 0.094 0.906 17 C -0.218 4.218 18 C 0.013 3.987 19 N -0.321 5.321 20 C 0.020 3.980 21 C -0.383 4.383 22 H 0.085 0.915 23 C -0.193 4.193 24 N -0.545 5.545 25 Si 0.721 3.279 26 H -0.201 1.201 27 H -0.216 1.216 28 H -0.217 1.217 29 C -0.155 4.155 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.239 0.761 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.046 0.954 46 H 0.063 0.937 47 H 0.014 0.986 48 H 0.062 0.938 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.765 5.808 2.413 15.133 hybrid contribution -0.365 -1.277 0.863 1.583 sum -14.129 4.531 3.276 15.195 Atomic orbital electron populations 1.23030 0.78657 1.03826 1.01149 1.86109 1.21115 1.26807 1.88800 1.18824 0.91950 0.84162 0.96980 1.21222 0.99799 0.92438 1.08950 1.20898 0.94390 0.96912 0.98129 1.20944 0.93347 0.98593 1.01074 1.19192 0.92931 0.92922 0.99075 1.20754 0.91304 0.92854 0.89914 0.88381 1.87882 1.36284 1.42758 1.60530 1.22846 0.85154 1.01232 0.97252 1.20643 0.79552 0.84295 0.86624 1.90630 1.43062 1.26148 1.82505 1.45684 1.58231 1.20279 1.08977 1.21806 0.96436 0.98830 0.81810 0.90591 1.22145 0.99404 1.00294 0.99931 1.21192 0.94629 0.89355 0.93484 1.43903 1.01632 1.44170 1.42377 1.20789 0.83398 1.00457 0.93380 1.19146 0.98209 1.18793 1.02122 0.91494 1.24986 0.97547 0.99494 0.97296 1.70086 1.12092 1.41069 1.31235 0.86389 0.78266 0.82675 0.80578 1.20068 1.21594 1.21668 1.20282 0.91732 0.98055 1.05434 0.92832 0.92714 0.88340 0.85631 0.85739 0.85176 0.93938 0.93009 0.89523 0.76083 0.92952 0.92335 0.93051 0.93337 0.92971 0.95430 0.93703 0.98586 0.93842 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.17 10.50 -19.43 -0.20 -4.37 16 3 C 0.13 1.75 6.69 -39.22 -0.26 1.49 16 4 C -0.21 -2.45 9.04 -39.43 -0.36 -2.80 16 5 C -0.09 -1.04 10.04 -39.61 -0.40 -1.44 16 6 C -0.12 -1.79 9.35 -39.56 -0.37 -2.15 16 7 C -0.04 -0.65 4.92 -104.64 -0.51 -1.16 16 8 C 0.11 2.05 2.72 -29.03 -0.08 1.97 16 9 H 0.10 1.80 7.65 -51.93 -0.40 1.41 16 10 O -0.36 -6.43 9.20 -55.09 -0.51 -6.93 16 11 C 0.03 0.50 10.81 101.05 1.09 1.60 16 12 C 0.50 10.41 7.08 -10.99 -0.08 10.33 16 13 O -0.55 -12.79 16.17 -14.31 -0.23 -13.02 16 14 N -0.68 -13.49 4.44 -53.81 -0.24 -13.73 16 15 C 0.12 2.28 2.88 -67.93 -0.20 2.08 16 16 H 0.08 1.67 7.57 -51.92 -0.39 1.28 16 17 C -0.16 -2.52 9.49 37.16 0.35 -2.17 16 18 C 0.14 2.75 5.36 -4.04 -0.02 2.73 16 19 N -0.60 -14.14 2.82 -181.12 -0.51 -14.65 16 20 C 0.16 3.98 9.01 59.85 0.54 4.52 16 21 C -0.25 -6.34 8.02 -15.06 -0.12 -6.46 16 22 H 0.07 1.64 7.84 -52.49 -0.41 1.23 16 23 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 24 N -0.90 -24.94 10.59 55.49 0.59 -24.36 16 25 Si 0.89 20.65 29.57 -169.99 -5.03 15.62 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 C -0.14 -2.10 9.61 -39.44 -0.38 -2.48 16 30 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 31 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.13 1.14 6.30 -52.48 -0.33 0.81 16 34 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.13 1.96 7.77 -52.48 -0.41 1.56 16 36 H 0.04 0.62 8.08 -51.93 -0.42 0.20 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.40 7.94 7.40 -40.82 -0.30 7.64 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 44 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 45 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 46 H 0.04 1.16 7.19 -51.93 -0.37 0.79 16 47 H 0.00 -0.09 7.84 -51.93 -0.41 -0.50 16 48 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 49 H 0.14 2.14 8.04 -52.49 -0.42 1.72 16 LS Contribution 404.09 15.07 6.09 6.09 Total: -1.00 -31.39 404.09 -7.89 -39.28 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -7.97 Total: 8.72 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 0.11 Total: 7.35 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.16 Total: -52.73 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.94 Total: -24.33 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.39 -7.89 -39.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754317362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.002 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds