Wall clock time and date at job start Sat Apr 11 2020 04:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 116.99848 * 2 1 4 4 C 1.38756 * 120.05699 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94525 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05605 * 359.74450 * 5 4 3 7 7 C 1.38250 * 120.11019 * 0.50990 * 6 5 4 8 8 C 1.50703 * 119.97023 * 179.76370 * 7 6 5 9 9 H 1.08997 * 109.46712 * 159.72312 * 8 7 6 10 10 O 1.42901 * 109.46693 * 39.72813 * 8 7 6 11 11 C 1.42910 * 113.99730 * 149.99934 * 10 8 7 12 12 C 1.50697 * 109.47105 * 279.72572 * 8 7 6 13 13 O 1.21290 * 119.99959 * 115.00208 * 12 8 7 14 14 N 1.34770 * 120.00173 * 294.99895 * 12 8 7 15 15 C 1.46496 * 120.00190 * 180.27725 * 14 12 8 16 16 H 1.09007 * 109.47383 * 34.72557 * 15 14 12 17 17 C 1.52999 * 109.47176 * 274.72665 * 15 14 12 18 18 C 1.52998 * 109.47611 * 154.72531 * 15 14 12 19 19 N 1.46499 * 109.46765 * 305.00427 * 18 15 14 20 20 C 1.46506 * 119.99708 * 269.99261 * 19 18 15 21 21 C 1.36939 * 120.00376 * 90.00027 * 19 18 15 22 22 H 1.07997 * 119.99774 * 22.33050 * 21 19 18 23 23 C 1.38816 * 119.99776 * 202.33433 * 21 19 18 24 24 N 1.31612 * 120.00352 * 11.36455 * 23 21 19 25 25 Si 1.86799 * 119.99408 * 191.36694 * 23 21 19 26 26 H 1.48500 * 109.47473 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47050 * 120.00109 * 25 23 21 28 28 H 1.48502 * 109.46861 * 239.99710 * 25 23 21 29 29 C 1.38164 * 120.05285 * 359.49114 * 7 6 5 30 30 H 1.08998 * 109.47150 * 300.00214 * 1 2 3 31 31 H 1.09002 * 109.47131 * 60.00497 * 1 2 3 32 32 H 1.08997 * 109.46690 * 179.97438 * 1 2 3 33 33 H 1.08009 * 120.02534 * 0.02562 * 4 3 2 34 34 H 1.08010 * 119.97052 * 180.02562 * 5 4 3 35 35 H 1.08005 * 119.94391 * 180.27604 * 6 5 4 36 36 H 1.08997 * 109.46656 * 299.99560 * 11 10 8 37 37 H 1.09003 * 109.46574 * 59.99372 * 11 10 8 38 38 H 1.08994 * 109.46703 * 179.97438 * 11 10 8 39 39 H 0.96997 * 120.00168 * 0.02562 * 14 12 8 40 40 H 1.09004 * 109.47461 * 59.99755 * 17 15 14 41 41 H 1.09000 * 109.47185 * 179.97438 * 17 15 14 42 42 H 1.08998 * 109.47254 * 299.99730 * 17 15 14 43 43 H 1.08998 * 109.47120 * 64.99908 * 18 15 14 44 44 H 1.09000 * 109.47450 * 185.00220 * 18 15 14 45 45 H 1.08998 * 109.46765 * 94.23333 * 20 19 18 46 46 H 1.08996 * 109.47088 * 214.22574 * 20 19 18 47 47 H 1.08991 * 109.47263 * 334.22666 * 20 19 18 48 48 H 0.96999 * 119.99999 * 180.02562 * 24 23 21 49 49 H 1.07997 * 120.02211 * 180.27239 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6759 0.0064 7 6 4.0559 2.5172 0.0006 8 6 5.5607 2.5983 0.0010 9 1 5.9754 1.6535 0.3524 10 8 5.9805 3.6543 0.8675 11 6 7.2537 3.4339 1.4779 12 6 6.0495 2.8721 -1.3979 13 8 6.6149 3.9153 -1.6495 14 7 5.8583 1.9579 -2.3695 15 6 6.3388 2.2215 -3.7281 16 1 7.2692 2.7875 -3.6811 17 6 5.2884 3.0295 -4.4928 18 6 6.5851 0.8944 -4.4485 19 7 7.5002 0.0705 -3.6548 20 6 8.9465 0.1716 -3.8654 21 6 7.0037 -0.7943 -2.7162 22 1 5.9850 -1.1452 -2.7905 23 6 7.8098 -1.2198 -1.6693 24 7 8.9654 -0.6303 -1.4468 25 14 7.2545 -2.6291 -0.5762 26 1 5.9280 -3.1164 -1.0324 27 1 8.2424 -3.7351 -0.6543 28 1 7.1514 -2.1557 0.8276 29 6 3.4310 1.2849 0.0000 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 0.2127 2.3203 0.0014 34 1 1.3338 4.5115 0.0019 35 1 3.7921 4.6382 0.0113 36 1 7.2173 2.5229 2.0753 37 1 8.0145 3.3309 0.7042 38 1 7.5003 4.2799 2.1194 39 1 5.4058 1.1238 -2.1685 40 1 5.1129 3.9751 -3.9796 41 1 5.6461 3.2260 -5.5035 42 1 4.3581 2.4636 -4.5399 43 1 5.6388 0.3682 -4.5743 44 1 7.0259 1.0881 -5.4264 45 1 9.3680 0.8835 -3.1558 46 1 9.4047 -0.8058 -3.7148 47 1 9.1427 0.5122 -4.8819 48 1 9.5288 -0.9279 -0.7155 49 1 4.0206 0.3801 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754317362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:44 Heat of formation + Delta-G solvation = -84.320902 kcal Electronic energy + Delta-G solvation = -31132.087897 eV Core-core repulsion = 27060.092167 eV Total energy + Delta-G solvation = -4071.995730 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.56030 -40.68359 -39.02791 -38.12690 -37.68756 -35.68597 -33.63581 -32.84489 -31.60173 -31.27566 -28.65276 -28.04629 -28.02939 -27.38055 -26.85302 -23.75811 -23.55410 -22.85258 -21.77507 -21.18004 -19.20045 -18.75934 -18.25703 -17.98239 -17.12479 -17.00285 -16.80302 -16.65543 -16.58595 -16.33296 -15.73134 -15.63337 -15.36956 -14.89453 -14.81240 -14.56291 -14.47782 -14.28421 -13.87899 -13.72299 -13.45810 -13.35083 -13.11087 -12.89217 -12.83355 -12.74219 -12.55598 -12.54723 -12.39993 -12.16212 -12.05588 -11.95610 -11.92597 -11.76369 -11.70093 -11.61183 -10.62318 -10.50502 -9.88065 -9.81051 -9.19223 -8.76701 -7.77915 -5.25194 0.17678 0.44384 1.43841 1.49155 1.56139 1.65109 2.07862 2.41571 2.51526 2.60817 2.99862 3.37018 3.57114 3.69083 3.80545 3.88312 3.95060 4.12896 4.16501 4.31017 4.34616 4.38410 4.43228 4.45238 4.46331 4.52885 4.53875 4.63723 4.70498 4.75052 4.77527 4.84269 4.89948 4.94577 4.99063 5.16417 5.26162 5.34124 5.38757 5.42262 5.49517 5.66307 5.71060 5.73590 5.74679 5.90108 6.35043 6.46202 6.71196 7.17573 7.35179 7.89434 8.35583 9.25539 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008899 B = 0.005028 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.745466 B = 5567.204573 C = 6312.187361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.124 3.876 4 C -0.193 4.193 5 C -0.074 4.074 6 C -0.136 4.136 7 C -0.053 4.053 8 C 0.120 3.880 9 H 0.086 0.914 10 O -0.365 6.365 11 C 0.030 3.970 12 C 0.499 3.501 13 O -0.581 6.581 14 N -0.679 5.679 15 C 0.120 3.880 16 H 0.041 0.959 17 C -0.145 4.145 18 C 0.142 3.858 19 N -0.611 5.611 20 C 0.179 3.821 21 C -0.243 4.243 22 H 0.077 0.923 23 C -0.044 4.044 24 N -0.934 5.934 25 Si 0.945 3.055 26 H -0.260 1.260 27 H -0.299 1.299 28 H -0.295 1.295 29 C -0.155 4.155 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.120 0.880 36 H 0.053 0.947 37 H 0.021 0.979 38 H 0.117 0.883 39 H 0.404 0.596 40 H 0.037 0.963 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.076 0.924 45 H -0.008 1.008 46 H 0.020 0.980 47 H 0.027 0.973 48 H 0.243 0.757 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.990 5.124 1.855 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.078 3.922 4 C -0.212 4.212 5 C -0.092 4.092 6 C -0.154 4.154 7 C -0.054 4.054 8 C 0.058 3.942 9 H 0.104 0.896 10 O -0.283 6.283 11 C -0.066 4.066 12 C 0.285 3.715 13 O -0.462 6.462 14 N -0.328 5.328 15 C 0.013 3.987 16 H 0.060 0.940 17 C -0.204 4.204 18 C 0.015 3.985 19 N -0.334 5.334 20 C 0.034 3.966 21 C -0.373 4.373 22 H 0.095 0.905 23 C -0.240 4.240 24 N -0.581 5.581 25 Si 0.775 3.225 26 H -0.184 1.184 27 H -0.226 1.226 28 H -0.222 1.222 29 C -0.174 4.174 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.133 0.867 33 H 0.179 0.821 34 H 0.176 0.824 35 H 0.138 0.862 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.135 0.865 39 H 0.240 0.760 40 H 0.056 0.944 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.010 0.990 46 H 0.039 0.961 47 H 0.046 0.954 48 H 0.052 0.948 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.504 5.752 1.792 18.512 hybrid contribution 0.700 -1.265 0.993 1.754 sum -16.804 4.487 2.785 17.614 Atomic orbital electron populations 1.23386 0.76130 1.05589 1.02605 1.86086 1.23774 1.26633 1.88612 1.18905 0.91483 0.85305 0.96475 1.21589 1.01472 0.91290 1.06829 1.21244 0.93301 0.98534 0.96127 1.20982 0.94717 0.97558 1.02164 1.19014 0.91356 0.93911 1.01131 1.20672 0.93153 0.92104 0.88277 0.89606 1.87868 1.36858 1.43047 1.60477 1.22966 0.83710 1.03244 0.96675 1.21132 0.78840 0.83818 0.87728 1.90594 1.44712 1.27603 1.83335 1.45739 1.57733 1.20018 1.09359 1.21763 0.96269 0.98762 0.81956 0.94044 1.22009 0.98930 0.99032 1.00382 1.21382 0.94653 0.88764 0.93694 1.44128 1.01884 1.44875 1.42478 1.20494 0.83864 0.98128 0.94092 1.19437 0.98221 1.18086 1.01603 0.90491 1.25592 0.97835 1.01651 0.98873 1.70260 1.13363 1.42628 1.31847 0.85519 0.78173 0.79971 0.78864 1.18427 1.22637 1.22241 1.20214 0.92893 0.97219 1.07034 0.91190 0.91273 0.86684 0.82053 0.82359 0.86190 0.92866 0.96006 0.86451 0.76008 0.94372 0.89803 0.91312 0.91556 0.90598 0.98974 0.96119 0.95438 0.94771 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -8.17 10.50 -92.44 -0.97 -9.14 16 3 C 0.12 3.20 6.69 22.51 0.15 3.35 16 4 C -0.19 -3.91 9.04 22.37 0.20 -3.71 16 5 C -0.07 -1.59 10.04 22.25 0.22 -1.36 16 6 C -0.14 -3.89 9.35 22.28 0.21 -3.68 16 7 C -0.05 -1.73 4.92 -19.88 -0.10 -1.83 16 8 C 0.12 4.52 2.72 29.10 0.08 4.60 16 9 H 0.09 3.38 7.65 -2.39 -0.02 3.36 16 10 O -0.37 -13.62 9.20 -129.99 -1.20 -14.81 16 11 C 0.03 1.00 10.81 113.37 1.23 2.22 16 12 C 0.50 21.44 7.08 87.66 0.62 22.06 16 13 O -0.58 -28.56 16.17 15.93 0.26 -28.30 16 14 N -0.68 -27.35 4.44 -442.54 -1.96 -29.32 16 15 C 0.12 4.56 2.88 44.99 0.13 4.69 16 16 H 0.04 1.87 7.57 -2.38 -0.02 1.85 16 17 C -0.14 -4.33 9.49 71.98 0.68 -3.65 16 18 C 0.14 5.27 5.36 86.38 0.46 5.74 16 19 N -0.61 -28.74 2.82 -726.95 -2.05 -30.79 16 20 C 0.18 8.84 9.01 127.77 1.15 9.99 16 21 C -0.24 -12.16 8.02 84.03 0.67 -11.48 16 22 H 0.08 3.67 7.84 -2.91 -0.02 3.64 16 23 C -0.04 -2.34 5.13 84.86 0.44 -1.91 16 24 N -0.93 -53.79 10.59 21.65 0.23 -53.56 16 25 Si 0.95 43.14 29.57 68.60 2.03 45.17 16 26 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 28 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 29 C -0.15 -4.75 9.61 22.36 0.21 -4.54 16 30 H 0.07 0.71 7.66 -2.39 -0.02 0.70 16 31 H 0.07 0.73 7.66 -2.39 -0.02 0.72 16 32 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.16 2.08 6.30 -2.91 -0.02 2.06 16 34 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 35 H 0.12 3.63 7.77 -2.91 -0.02 3.61 16 36 H 0.05 1.62 8.08 -2.39 -0.02 1.60 16 37 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 39 H 0.40 16.08 7.40 -92.71 -0.69 15.39 16 40 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.07 2.27 8.03 -2.39 -0.02 2.25 16 44 H 0.08 2.48 7.86 -2.39 -0.02 2.46 16 45 H -0.01 -0.45 7.42 -2.39 -0.02 -0.47 16 46 H 0.02 1.08 7.19 -2.39 -0.02 1.06 16 47 H 0.03 1.15 7.84 -2.39 -0.02 1.13 16 48 H 0.24 13.85 8.31 -92.71 -0.77 13.08 16 49 H 0.12 4.00 8.04 -2.91 -0.02 3.97 16 Total: -1.00 -70.83 404.09 4.06 -66.76 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 0.25 Total: 32.17 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 7.48 Total: 21.82 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -3.78 Total: -113.67 kcal Atomic # 8 Polarization: -50.35 SS G_CDS: -1.91 Total: -52.26 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -70.83 4.06 -66.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754317362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.557 kcal (2) G-P(sol) polarization free energy of solvation -70.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds