Wall clock time and date at job start Sat Apr 11 2020 04:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00222 * 2 1 4 4 C 1.38757 * 120.05234 * 5.09948 * 3 2 1 5 5 C 1.38128 * 119.94260 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05239 * 359.97383 * 5 4 3 7 7 C 1.38242 * 120.11429 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.97376 * 179.97438 * 7 6 5 9 9 H 1.08995 * 109.47570 * 199.93789 * 8 7 6 10 10 O 1.42900 * 109.46770 * 319.93853 * 8 7 6 11 11 C 1.42909 * 113.99673 * 269.99525 * 10 8 7 12 12 C 1.50699 * 109.46889 * 79.93025 * 8 7 6 13 13 O 1.21281 * 120.00285 * 248.75011 * 12 8 7 14 14 N 1.34780 * 119.99847 * 68.76038 * 12 8 7 15 15 C 1.46500 * 120.00099 * 185.26743 * 14 12 8 16 16 H 1.08991 * 109.47208 * 39.46371 * 15 14 12 17 17 C 1.53004 * 109.46731 * 279.46551 * 15 14 12 18 18 C 1.53005 * 109.47170 * 159.46757 * 15 14 12 19 19 N 1.46493 * 109.46735 * 302.48089 * 18 15 14 20 20 C 1.46500 * 119.99945 * 275.46158 * 19 18 15 21 21 C 1.36945 * 120.00357 * 95.46698 * 19 18 15 22 22 H 1.07994 * 120.00177 * 219.95561 * 21 19 18 23 23 C 1.38815 * 119.99470 * 39.95232 * 21 19 18 24 24 N 1.31612 * 120.00253 * 7.65644 * 23 21 19 25 25 Si 1.86799 * 119.99624 * 187.65130 * 23 21 19 26 26 H 1.48496 * 109.47233 * 55.71782 * 25 23 21 27 27 H 1.48498 * 109.47207 * 175.72029 * 25 23 21 28 28 H 1.48506 * 109.47014 * 295.71994 * 25 23 21 29 29 C 1.38168 * 120.05813 * 0.02562 * 7 6 5 30 30 H 1.09000 * 109.47139 * 303.80331 * 1 2 3 31 31 H 1.09007 * 109.47546 * 63.80422 * 1 2 3 32 32 H 1.09006 * 109.47648 * 183.80161 * 1 2 3 33 33 H 1.07998 * 120.02620 * 0.02562 * 4 3 2 34 34 H 1.07989 * 119.97003 * 179.97438 * 5 4 3 35 35 H 1.08001 * 119.94142 * 180.27761 * 6 5 4 36 36 H 1.08997 * 109.46950 * 60.00376 * 11 10 8 37 37 H 1.08998 * 109.46645 * 180.02562 * 11 10 8 38 38 H 1.08998 * 109.47065 * 300.00057 * 11 10 8 39 39 H 0.97003 * 120.00057 * 5.26380 * 14 12 8 40 40 H 1.08998 * 109.47376 * 60.00152 * 17 15 14 41 41 H 1.09002 * 109.46618 * 180.02562 * 17 15 14 42 42 H 1.09004 * 109.46949 * 299.99901 * 17 15 14 43 43 H 1.09006 * 109.47101 * 62.47877 * 18 15 14 44 44 H 1.08999 * 109.47113 * 182.48058 * 18 15 14 45 45 H 1.09005 * 109.47192 * 95.02025 * 20 19 18 46 46 H 1.09004 * 109.47592 * 215.01537 * 20 19 18 47 47 H 1.09000 * 109.47537 * 335.01703 * 20 19 18 48 48 H 0.97003 * 120.00084 * 180.02562 * 24 23 21 49 49 H 1.07997 * 120.02920 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2956 2.3731 0.1068 5 6 1.9250 3.6026 0.1060 6 6 3.3019 3.6757 -0.0005 7 6 4.0517 2.5192 -0.1070 8 6 5.5519 2.6026 -0.2235 9 1 5.9360 1.6730 -0.6434 10 8 5.9034 3.6925 -1.0782 11 6 6.0106 3.3375 -2.4584 12 6 6.1503 2.8221 1.1421 13 8 6.6758 3.8816 1.4108 14 7 6.1016 1.8409 2.0648 15 6 6.5785 2.0921 3.4271 16 1 6.2801 3.0932 3.7377 17 6 8.1042 1.9809 3.4617 18 6 5.9702 1.0600 4.3789 19 7 4.5088 1.1261 4.3013 20 6 3.7763 2.1069 5.1060 21 6 3.8275 0.2710 3.4768 22 1 2.9807 0.6280 2.9095 23 6 4.2253 -1.0546 3.3702 24 7 5.1574 -1.5283 4.1695 25 14 3.4376 -2.1662 2.0921 26 1 3.5876 -1.5569 0.7463 27 1 4.1041 -3.4930 2.1119 28 1 1.9949 -2.3322 2.4023 29 6 3.4268 1.2869 -0.1078 30 1 -0.3633 0.5717 0.8539 31 1 -0.3634 0.4537 -0.9221 32 1 -0.3634 -1.0254 0.0681 33 1 0.2203 2.3164 0.1904 34 1 1.3414 4.5075 0.1886 35 1 3.7925 4.6378 0.0036 36 1 5.0544 2.9492 -2.8090 37 1 6.2807 4.2187 -3.0402 38 1 6.7790 2.5737 -2.5784 39 1 5.7506 0.9684 1.8270 40 1 8.5376 2.7161 2.7837 41 1 8.4590 2.1674 4.4754 42 1 8.4027 0.9796 3.1510 43 1 6.3044 0.0622 4.0946 44 1 6.2900 1.2735 5.3988 45 1 3.5881 2.9992 4.5088 46 1 2.8270 1.6777 5.4267 47 1 4.3684 2.3739 5.9814 48 1 5.4357 -2.4545 4.0947 49 1 4.0130 0.3837 -0.1914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754317363.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:47 Heat of formation + Delta-G solvation = -65.200359 kcal Electronic energy + Delta-G solvation = -31841.319947 eV Core-core repulsion = 27770.153346 eV Total energy + Delta-G solvation = -4071.166601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.22283 -39.26112 -37.74649 -36.72005 -36.04479 -33.74048 -32.05452 -31.21701 -30.31397 -29.89991 -27.60281 -27.09733 -26.06522 -25.57097 -25.47822 -22.40608 -22.03718 -21.33231 -20.17783 -19.52870 -17.94505 -17.10879 -16.67987 -16.33611 -15.90889 -15.69899 -15.54608 -15.38594 -15.09811 -14.67361 -14.12913 -14.11175 -13.71456 -13.56451 -13.36663 -13.21791 -12.90806 -12.88213 -12.59987 -12.31874 -11.98859 -11.88135 -11.67220 -11.50820 -11.40757 -11.25460 -11.18842 -11.00643 -10.88564 -10.79585 -10.57887 -10.52350 -10.07676 -9.95872 -9.86357 -9.73729 -9.22788 -8.55309 -8.52670 -8.21534 -7.91877 -6.49564 -5.77000 -3.45277 1.45416 1.73407 3.12248 3.33714 3.36420 3.40136 3.47355 3.59025 3.94157 4.44850 4.49188 4.79783 4.95826 5.10600 5.20934 5.22165 5.28074 5.30392 5.32587 5.42119 5.45796 5.55354 5.58582 5.61317 5.66808 5.72969 5.79114 5.90530 6.10689 6.18921 6.21266 6.49134 6.50825 6.51957 6.56965 6.63606 6.73325 6.74439 6.85173 6.89015 6.90651 6.94080 7.14014 7.39097 7.63543 7.69196 7.83235 8.33872 8.55716 8.91687 9.20739 9.78317 10.39534 11.19648 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007953 B = 0.007458 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3519.619285 B = 3753.681217 C = 5798.302930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.133 3.867 4 C -0.202 4.202 5 C -0.086 4.086 6 C -0.122 4.122 7 C -0.071 4.071 8 C 0.115 3.885 9 H 0.088 0.912 10 O -0.351 6.351 11 C 0.028 3.972 12 C 0.517 3.483 13 O -0.540 6.540 14 N -0.684 5.684 15 C 0.124 3.876 16 H 0.062 0.938 17 C -0.158 4.158 18 C 0.131 3.869 19 N -0.589 5.589 20 C 0.124 3.876 21 C -0.240 4.240 22 H 0.059 0.941 23 C 0.007 3.993 24 N -0.898 5.898 25 Si 0.893 3.107 26 H -0.267 1.267 27 H -0.296 1.296 28 H -0.283 1.283 29 C -0.122 4.122 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.408 0.592 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.117 0.883 44 H 0.035 0.965 45 H -0.001 1.001 46 H 0.032 0.968 47 H 0.025 0.975 48 H 0.255 0.745 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.855 4.826 -10.523 12.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.088 3.912 4 C -0.220 4.220 5 C -0.105 4.105 6 C -0.141 4.141 7 C -0.072 4.072 8 C 0.053 3.947 9 H 0.106 0.894 10 O -0.268 6.268 11 C -0.069 4.069 12 C 0.300 3.700 13 O -0.417 6.417 14 N -0.335 5.335 15 C 0.017 3.983 16 H 0.081 0.919 17 C -0.217 4.217 18 C 0.004 3.996 19 N -0.310 5.310 20 C -0.022 4.022 21 C -0.370 4.370 22 H 0.076 0.924 23 C -0.192 4.192 24 N -0.542 5.542 25 Si 0.722 3.278 26 H -0.193 1.193 27 H -0.222 1.222 28 H -0.209 1.209 29 C -0.141 4.141 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.061 0.939 39 H 0.244 0.756 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.135 0.865 44 H 0.053 0.947 45 H 0.017 0.983 46 H 0.050 0.950 47 H 0.043 0.957 48 H 0.066 0.934 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.342 5.401 -10.201 12.016 hybrid contribution -1.030 -1.212 -0.754 1.760 sum -4.372 4.188 -10.955 12.517 Atomic orbital electron populations 1.23021 0.79041 1.03732 1.00991 1.86165 1.20819 1.26752 1.88624 1.18809 0.92106 0.84097 0.96164 1.21198 0.99870 0.92525 1.08436 1.20822 0.94414 0.96779 0.98440 1.20817 0.93452 0.98316 1.01477 1.19652 0.94075 0.93069 1.00430 1.20757 0.90980 0.91483 0.91450 0.89417 1.88037 1.89975 1.32148 1.16683 1.22870 1.00121 1.01444 0.82466 1.19902 0.79764 0.84770 0.85515 1.90641 1.44841 1.26338 1.79920 1.45844 1.62349 1.14822 1.10483 1.21866 0.92454 1.01528 0.82445 0.91939 1.22101 0.96820 1.01455 1.01324 1.21493 0.83900 1.00106 0.94114 1.43614 1.00716 1.38676 1.48018 1.21079 0.95833 0.92279 0.92966 1.18988 1.12216 0.88474 1.17369 0.92370 1.25337 0.98927 0.96592 0.98300 1.69736 1.31748 1.14468 1.38235 0.86537 0.79293 0.79726 0.82229 1.19251 1.22226 1.20949 1.20258 0.91878 0.97591 1.04353 0.92539 0.93033 0.88605 0.85790 0.86042 0.85575 0.93828 0.89352 0.93928 0.75580 0.92971 0.92410 0.92762 0.86545 0.94657 0.98317 0.94963 0.95673 0.93437 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.87 101.05 1.00 1.33 16 2 O -0.31 -5.24 10.49 -19.42 -0.20 -5.45 16 3 C 0.13 2.25 6.68 -39.22 -0.26 1.99 16 4 C -0.20 -2.98 9.07 -39.43 -0.36 -3.33 16 5 C -0.09 -1.26 10.04 -39.60 -0.40 -1.65 16 6 C -0.12 -1.99 9.34 -39.56 -0.37 -2.36 16 7 C -0.07 -1.20 4.91 -104.64 -0.51 -1.72 16 8 C 0.11 1.93 2.72 -29.03 -0.08 1.85 16 9 H 0.09 1.28 7.64 -51.93 -0.40 0.89 16 10 O -0.35 -5.71 9.22 -54.99 -0.51 -6.22 16 11 C 0.03 0.32 10.81 101.05 1.09 1.42 16 12 C 0.52 10.29 7.02 -10.98 -0.08 10.22 16 13 O -0.54 -12.27 15.80 -14.20 -0.22 -12.49 16 14 N -0.68 -13.75 4.73 -53.80 -0.25 -14.00 16 15 C 0.12 2.52 2.79 -67.93 -0.19 2.33 16 16 H 0.06 1.37 7.80 -51.93 -0.41 0.97 16 17 C -0.16 -2.82 9.39 37.16 0.35 -2.47 16 18 C 0.13 2.93 4.81 -4.04 -0.02 2.91 16 19 N -0.59 -14.12 2.70 -181.11 -0.49 -14.61 16 20 C 0.12 2.71 10.73 59.85 0.64 3.35 16 21 C -0.24 -6.08 8.28 -15.05 -0.12 -6.21 16 22 H 0.06 1.54 7.84 -52.49 -0.41 1.13 16 23 C 0.01 0.19 5.21 -17.43 -0.09 0.10 16 24 N -0.90 -24.09 10.91 55.49 0.61 -23.48 16 25 Si 0.89 20.53 29.56 -169.99 -5.02 15.51 16 26 H -0.27 -5.82 6.34 56.52 0.36 -5.46 16 27 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 29 C -0.12 -2.13 9.61 -39.43 -0.38 -2.50 16 30 H 0.06 0.65 7.20 -51.93 -0.37 0.27 16 31 H 0.05 0.50 8.06 -51.93 -0.42 0.08 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.12 1.51 6.28 -52.49 -0.33 1.18 16 34 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.13 2.07 7.78 -52.49 -0.41 1.66 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 39 H 0.41 8.46 7.53 -40.82 -0.31 8.15 16 40 H 0.05 0.95 7.64 -51.93 -0.40 0.55 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.12 2.88 5.23 -51.93 -0.27 2.61 16 44 H 0.04 0.77 7.95 -51.93 -0.41 0.36 16 45 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 46 H 0.03 0.70 8.08 -51.93 -0.42 0.28 16 47 H 0.02 0.50 7.89 -51.93 -0.41 0.09 16 48 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 49 H 0.13 2.30 7.27 -52.49 -0.38 1.92 16 LS Contribution 402.76 15.07 6.07 6.07 Total: -1.00 -30.83 402.76 -7.71 -38.54 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -7.90 Total: 10.88 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 0.22 Total: 5.25 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.14 Total: -52.09 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.94 Total: -24.16 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.83 -7.71 -38.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754317363.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.661 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds