Wall clock time and date at job start Sat Apr 11 2020 04:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00222 * 2 1 4 4 C 1.38757 * 120.05234 * 5.09948 * 3 2 1 5 5 C 1.38128 * 119.94260 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05239 * 359.97383 * 5 4 3 7 7 C 1.38242 * 120.11429 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.97376 * 179.97438 * 7 6 5 9 9 H 1.08995 * 109.47570 * 199.93789 * 8 7 6 10 10 O 1.42900 * 109.46770 * 319.93853 * 8 7 6 11 11 C 1.42909 * 113.99673 * 269.99525 * 10 8 7 12 12 C 1.50699 * 109.46889 * 79.93025 * 8 7 6 13 13 O 1.21281 * 120.00285 * 248.75011 * 12 8 7 14 14 N 1.34780 * 119.99847 * 68.76038 * 12 8 7 15 15 C 1.46500 * 120.00099 * 185.26743 * 14 12 8 16 16 H 1.08991 * 109.47208 * 39.46371 * 15 14 12 17 17 C 1.53004 * 109.46731 * 279.46551 * 15 14 12 18 18 C 1.53005 * 109.47170 * 159.46757 * 15 14 12 19 19 N 1.46493 * 109.46735 * 302.48089 * 18 15 14 20 20 C 1.46500 * 119.99945 * 275.46158 * 19 18 15 21 21 C 1.36945 * 120.00357 * 95.46698 * 19 18 15 22 22 H 1.07994 * 120.00177 * 219.95561 * 21 19 18 23 23 C 1.38815 * 119.99470 * 39.95232 * 21 19 18 24 24 N 1.31612 * 120.00253 * 7.65644 * 23 21 19 25 25 Si 1.86799 * 119.99624 * 187.65130 * 23 21 19 26 26 H 1.48496 * 109.47233 * 55.71782 * 25 23 21 27 27 H 1.48498 * 109.47207 * 175.72029 * 25 23 21 28 28 H 1.48506 * 109.47014 * 295.71994 * 25 23 21 29 29 C 1.38168 * 120.05813 * 0.02562 * 7 6 5 30 30 H 1.09000 * 109.47139 * 303.80331 * 1 2 3 31 31 H 1.09007 * 109.47546 * 63.80422 * 1 2 3 32 32 H 1.09006 * 109.47648 * 183.80161 * 1 2 3 33 33 H 1.07998 * 120.02620 * 0.02562 * 4 3 2 34 34 H 1.07989 * 119.97003 * 179.97438 * 5 4 3 35 35 H 1.08001 * 119.94142 * 180.27761 * 6 5 4 36 36 H 1.08997 * 109.46950 * 60.00376 * 11 10 8 37 37 H 1.08998 * 109.46645 * 180.02562 * 11 10 8 38 38 H 1.08998 * 109.47065 * 300.00057 * 11 10 8 39 39 H 0.97003 * 120.00057 * 5.26380 * 14 12 8 40 40 H 1.08998 * 109.47376 * 60.00152 * 17 15 14 41 41 H 1.09002 * 109.46618 * 180.02562 * 17 15 14 42 42 H 1.09004 * 109.46949 * 299.99901 * 17 15 14 43 43 H 1.09006 * 109.47101 * 62.47877 * 18 15 14 44 44 H 1.08999 * 109.47113 * 182.48058 * 18 15 14 45 45 H 1.09005 * 109.47192 * 95.02025 * 20 19 18 46 46 H 1.09004 * 109.47592 * 215.01537 * 20 19 18 47 47 H 1.09000 * 109.47537 * 335.01703 * 20 19 18 48 48 H 0.97003 * 120.00084 * 180.02562 * 24 23 21 49 49 H 1.07997 * 120.02920 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2956 2.3731 0.1068 5 6 1.9250 3.6026 0.1060 6 6 3.3019 3.6757 -0.0005 7 6 4.0517 2.5192 -0.1070 8 6 5.5519 2.6026 -0.2235 9 1 5.9360 1.6730 -0.6434 10 8 5.9034 3.6925 -1.0782 11 6 6.0106 3.3375 -2.4584 12 6 6.1503 2.8221 1.1421 13 8 6.6758 3.8816 1.4108 14 7 6.1016 1.8409 2.0648 15 6 6.5785 2.0921 3.4271 16 1 6.2801 3.0932 3.7377 17 6 8.1042 1.9809 3.4617 18 6 5.9702 1.0600 4.3789 19 7 4.5088 1.1261 4.3013 20 6 3.7763 2.1069 5.1060 21 6 3.8275 0.2710 3.4768 22 1 2.9807 0.6280 2.9095 23 6 4.2253 -1.0546 3.3702 24 7 5.1574 -1.5283 4.1695 25 14 3.4376 -2.1662 2.0921 26 1 3.5876 -1.5569 0.7463 27 1 4.1041 -3.4930 2.1119 28 1 1.9949 -2.3322 2.4023 29 6 3.4268 1.2869 -0.1078 30 1 -0.3633 0.5717 0.8539 31 1 -0.3634 0.4537 -0.9221 32 1 -0.3634 -1.0254 0.0681 33 1 0.2203 2.3164 0.1904 34 1 1.3414 4.5075 0.1886 35 1 3.7925 4.6378 0.0036 36 1 5.0544 2.9492 -2.8090 37 1 6.2807 4.2187 -3.0402 38 1 6.7790 2.5737 -2.5784 39 1 5.7506 0.9684 1.8270 40 1 8.5376 2.7161 2.7837 41 1 8.4590 2.1674 4.4754 42 1 8.4027 0.9796 3.1510 43 1 6.3044 0.0622 4.0946 44 1 6.2900 1.2735 5.3988 45 1 3.5881 2.9992 4.5088 46 1 2.8270 1.6777 5.4267 47 1 4.3684 2.3739 5.9814 48 1 5.4357 -2.4545 4.0947 49 1 4.0130 0.3837 -0.1914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754317363.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:47 Heat of formation + Delta-G solvation = -83.111934 kcal Electronic energy + Delta-G solvation = -31842.096651 eV Core-core repulsion = 27770.153346 eV Total energy + Delta-G solvation = -4071.943306 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.52434 -40.62715 -39.10099 -38.00875 -37.67954 -35.48525 -33.47216 -33.02382 -31.68666 -31.23187 -28.76350 -28.09071 -27.81458 -27.43991 -26.62027 -23.73762 -23.54746 -22.81725 -21.71487 -21.12173 -19.19575 -18.76390 -18.08877 -17.84456 -17.21197 -17.08263 -16.73496 -16.56087 -16.50553 -16.28523 -15.66706 -15.56458 -15.32663 -15.05018 -14.76710 -14.61038 -14.49963 -14.18427 -13.79360 -13.68842 -13.43857 -13.27714 -13.24396 -12.85663 -12.84429 -12.71744 -12.69017 -12.57455 -12.35969 -12.25427 -12.05608 -11.91560 -11.83050 -11.73880 -11.53904 -11.11032 -10.64184 -10.48167 -9.89284 -9.78757 -9.13644 -8.43769 -7.73259 -5.44574 0.23829 0.50517 1.51308 1.54057 1.62646 1.64604 2.00208 2.42044 2.56012 2.71944 3.17349 3.33268 3.57323 3.75024 3.81030 3.89952 3.97021 4.14642 4.26894 4.29067 4.36952 4.39682 4.50044 4.53504 4.54532 4.55454 4.61196 4.64041 4.70415 4.76689 4.82033 4.89652 4.93367 4.99724 5.03263 5.11175 5.17107 5.31566 5.31701 5.43171 5.53615 5.68892 5.74345 5.76967 5.90413 6.03633 6.49422 6.56481 6.74839 7.23982 7.33425 7.87511 8.44511 9.20546 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007953 B = 0.007458 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3519.619285 B = 3753.681217 C = 5798.302930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.337 6.337 3 C 0.121 3.879 4 C -0.199 4.199 5 C -0.081 4.081 6 C -0.137 4.137 7 C -0.076 4.076 8 C 0.122 3.878 9 H 0.106 0.894 10 O -0.373 6.373 11 C 0.021 3.979 12 C 0.515 3.485 13 O -0.572 6.572 14 N -0.684 5.684 15 C 0.130 3.870 16 H 0.046 0.954 17 C -0.148 4.148 18 C 0.138 3.862 19 N -0.603 5.603 20 C 0.127 3.873 21 C -0.234 4.234 22 H 0.047 0.953 23 C -0.024 4.024 24 N -0.920 5.920 25 Si 0.938 3.062 26 H -0.252 1.252 27 H -0.304 1.304 28 H -0.289 1.289 29 C -0.140 4.140 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.120 0.880 36 H 0.050 0.950 37 H 0.108 0.892 38 H 0.055 0.945 39 H 0.405 0.595 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.098 0.902 44 H 0.038 0.962 45 H -0.001 1.001 46 H 0.029 0.971 47 H 0.041 0.959 48 H 0.251 0.749 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 5.237 -11.534 13.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.251 6.251 3 C 0.076 3.924 4 C -0.218 4.218 5 C -0.099 4.099 6 C -0.156 4.156 7 C -0.077 4.077 8 C 0.060 3.940 9 H 0.124 0.876 10 O -0.291 6.291 11 C -0.075 4.075 12 C 0.300 3.700 13 O -0.452 6.452 14 N -0.334 5.334 15 C 0.023 3.977 16 H 0.064 0.936 17 C -0.206 4.206 18 C 0.011 3.989 19 N -0.325 5.325 20 C -0.018 4.018 21 C -0.364 4.364 22 H 0.065 0.935 23 C -0.221 4.221 24 N -0.565 5.565 25 Si 0.767 3.233 26 H -0.177 1.177 27 H -0.231 1.231 28 H -0.216 1.216 29 C -0.159 4.159 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.138 0.862 36 H 0.069 0.931 37 H 0.126 0.874 38 H 0.074 0.926 39 H 0.241 0.759 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.116 0.884 44 H 0.056 0.944 45 H 0.017 0.983 46 H 0.048 0.952 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.413 5.822 -11.227 13.394 hybrid contribution -0.766 -1.295 -0.437 1.567 sum -5.179 4.526 -11.664 13.541 Atomic orbital electron populations 1.23336 0.76794 1.05112 1.02534 1.86110 1.23302 1.27038 1.88683 1.19013 0.92180 0.84926 0.96325 1.21513 1.01268 0.91755 1.07221 1.21170 0.93897 0.98018 0.96810 1.20928 0.94461 0.97861 1.02308 1.19633 0.93946 0.93205 1.00880 1.20620 0.91003 0.92423 0.89911 0.87649 1.88004 1.90044 1.32400 1.18641 1.23128 1.01056 1.02974 0.80325 1.20431 0.79019 0.83946 0.86568 1.90612 1.46314 1.27440 1.80812 1.45852 1.62255 1.14779 1.10511 1.21682 0.93945 0.99685 0.82350 0.93583 1.21997 0.94730 1.01491 1.02419 1.21370 0.83272 0.99556 0.94692 1.43825 1.01473 1.38916 1.48284 1.21071 0.95800 0.91670 0.93304 1.18920 1.11707 0.88672 1.17138 0.93507 1.25734 0.99350 0.97395 0.99622 1.69862 1.32823 1.14355 1.39500 0.85815 0.77932 0.77990 0.81565 1.17668 1.23124 1.21556 1.20264 0.92534 0.97345 1.05788 0.92029 0.90510 0.87336 0.82967 0.83041 0.86159 0.93118 0.87354 0.92629 0.75928 0.93455 0.90555 0.92374 0.88413 0.94352 0.98324 0.95242 0.94023 0.93907 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.87 113.37 1.12 1.47 16 2 O -0.34 -10.87 10.49 -92.40 -0.97 -11.84 16 3 C 0.12 3.92 6.68 22.51 0.15 4.07 16 4 C -0.20 -5.41 9.07 22.37 0.20 -5.21 16 5 C -0.08 -2.18 10.04 22.26 0.22 -1.96 16 6 C -0.14 -4.34 9.34 22.28 0.21 -4.13 16 7 C -0.08 -2.52 4.91 -19.88 -0.10 -2.61 16 8 C 0.12 4.05 2.72 29.10 0.08 4.13 16 9 H 0.11 3.03 7.64 -2.39 -0.02 3.01 16 10 O -0.37 -11.87 9.22 -130.09 -1.20 -13.07 16 11 C 0.02 0.45 10.81 113.37 1.23 1.68 16 12 C 0.52 20.56 7.02 87.66 0.62 21.17 16 13 O -0.57 -26.18 15.80 15.86 0.25 -25.93 16 14 N -0.68 -27.58 4.73 -442.53 -2.09 -29.67 16 15 C 0.13 5.29 2.79 44.99 0.13 5.42 16 16 H 0.05 2.03 7.80 -2.39 -0.02 2.01 16 17 C -0.15 -5.16 9.39 71.98 0.68 -4.48 16 18 C 0.14 6.15 4.81 86.38 0.42 6.57 16 19 N -0.60 -28.77 2.70 -726.92 -1.96 -30.73 16 20 C 0.13 5.45 10.73 127.77 1.37 6.83 16 21 C -0.23 -11.80 8.28 84.03 0.70 -11.10 16 22 H 0.05 2.47 7.84 -2.91 -0.02 2.45 16 23 C -0.02 -1.24 5.21 84.86 0.44 -0.80 16 24 N -0.92 -49.47 10.91 21.65 0.24 -49.24 16 25 Si 0.94 42.15 29.56 68.60 2.03 44.18 16 26 H -0.25 -10.63 6.34 99.48 0.63 -10.00 16 27 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 28 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 29 C -0.14 -4.82 9.61 22.37 0.21 -4.60 16 30 H 0.06 1.25 7.20 -2.39 -0.02 1.23 16 31 H 0.08 1.25 8.06 -2.38 -0.02 1.23 16 32 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.15 3.17 6.28 -2.91 -0.02 3.15 16 34 H 0.15 3.08 8.06 -2.92 -0.02 3.06 16 35 H 0.12 3.90 7.78 -2.91 -0.02 3.87 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 39 H 0.40 16.91 7.53 -92.71 -0.70 16.22 16 40 H 0.05 1.70 7.64 -2.39 -0.02 1.68 16 41 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.10 4.85 5.23 -2.38 -0.01 4.84 16 44 H 0.04 1.66 7.95 -2.39 -0.02 1.64 16 45 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 46 H 0.03 1.25 8.08 -2.38 -0.02 1.23 16 47 H 0.04 1.62 7.89 -2.39 -0.02 1.60 16 48 H 0.25 13.30 8.31 -92.71 -0.77 12.53 16 49 H 0.12 4.26 7.27 -2.91 -0.02 4.24 16 Total: -1.00 -65.63 402.76 4.13 -61.51 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: 0.17 Total: 38.36 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 7.67 Total: 16.44 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -3.82 Total: -109.64 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -1.92 Total: -50.84 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -65.63 4.13 -61.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754317363.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.605 kcal (2) G-P(sol) polarization free energy of solvation -65.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds