Wall clock time and date at job start Sat Apr 11 2020 04:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 116.99937 * 2 1 4 4 C 1.38755 * 120.05497 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94285 * 180.02562 * 4 3 2 6 6 C 1.38280 * 120.05613 * 0.02670 * 5 4 3 7 7 C 1.38247 * 120.11303 * 359.95444 * 6 5 4 8 8 C 1.50698 * 119.97241 * 179.74957 * 7 6 5 9 9 H 1.09003 * 109.47038 * 204.99750 * 8 7 6 10 10 O 1.42899 * 109.47048 * 324.99550 * 8 7 6 11 11 C 1.42896 * 114.00093 * 269.99919 * 10 8 7 12 12 C 1.50707 * 109.47180 * 84.99482 * 8 7 6 13 13 O 1.21277 * 119.99984 * 245.00038 * 12 8 7 14 14 N 1.34776 * 119.99481 * 65.00214 * 12 8 7 15 15 C 1.46506 * 119.99467 * 179.97438 * 14 12 8 16 16 H 1.08995 * 109.47283 * 325.00065 * 15 14 12 17 17 C 1.52999 * 109.47235 * 85.00125 * 15 14 12 18 18 C 1.52993 * 109.46854 * 204.99936 * 15 14 12 19 19 N 1.46500 * 109.47541 * 55.00196 * 18 15 14 20 20 C 1.46501 * 119.99852 * 270.00273 * 19 18 15 21 21 C 1.36938 * 120.00054 * 89.99632 * 19 18 15 22 22 H 1.07989 * 120.00012 * 23.62266 * 21 19 18 23 23 C 1.38816 * 119.99758 * 203.62044 * 21 19 18 24 24 N 1.31619 * 120.00050 * 11.31383 * 23 21 19 25 25 Si 1.86799 * 119.99618 * 191.31993 * 23 21 19 26 26 H 1.48497 * 109.47468 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47074 * 120.00010 * 25 23 21 28 28 H 1.48495 * 109.46867 * 239.99718 * 25 23 21 29 29 C 1.38158 * 120.05373 * 0.02562 * 7 6 5 30 30 H 1.09005 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47609 * 299.99933 * 1 2 3 32 32 H 1.09004 * 109.47638 * 60.00069 * 1 2 3 33 33 H 1.08000 * 120.02747 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.96807 * 179.97438 * 5 4 3 35 35 H 1.08003 * 119.94509 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.47012 * 60.00168 * 11 10 8 37 37 H 1.09004 * 109.47223 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.47217 * 299.99995 * 11 10 8 39 39 H 0.96999 * 120.00556 * 359.97438 * 14 12 8 40 40 H 1.09007 * 109.47025 * 299.99753 * 17 15 14 41 41 H 1.08995 * 109.47466 * 59.99470 * 17 15 14 42 42 H 1.08994 * 109.47345 * 180.02562 * 17 15 14 43 43 H 1.09002 * 109.47396 * 175.00255 * 18 15 14 44 44 H 1.08997 * 109.47396 * 295.00026 * 18 15 14 45 45 H 1.09003 * 109.47442 * 94.52754 * 20 19 18 46 46 H 1.09005 * 109.47011 * 214.53425 * 20 19 18 47 47 H 1.09003 * 109.46939 * 334.52747 * 20 19 18 48 48 H 0.97004 * 119.99634 * 180.02562 * 24 23 21 49 49 H 1.08006 * 120.02874 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5171 -0.0018 8 6 5.5607 2.5982 -0.0093 9 1 5.9715 1.6864 -0.4428 10 8 5.9732 3.7235 -0.7875 11 6 6.1761 3.4302 -2.1712 12 6 6.0624 2.7533 1.4033 13 8 6.6307 3.7715 1.7366 14 7 5.8796 1.7604 2.2961 15 6 6.3679 1.9109 3.6692 16 1 7.2990 2.4774 3.6637 17 6 5.3231 2.6549 4.5033 18 6 6.6154 0.5288 4.2768 19 7 7.5247 -0.2286 3.4132 20 6 6.9864 -1.0674 2.3394 21 6 8.8778 -0.1526 3.6097 22 1 9.2681 0.1259 4.5773 23 6 9.7477 -0.4334 2.5649 24 7 9.2859 -0.5536 1.3383 25 14 11.5736 -0.6409 2.9001 26 1 11.8344 -0.4592 4.3507 27 1 12.0011 -2.0019 2.4875 28 1 12.3367 0.3727 2.1287 29 6 3.4310 1.2849 -0.0008 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.2127 2.3203 0.0014 34 1 1.3338 4.5114 0.0000 35 1 3.7921 4.6381 -0.0025 36 1 5.2461 3.0628 -2.6050 37 1 6.4870 4.3355 -2.6927 38 1 6.9496 2.6688 -2.2716 39 1 5.4247 0.9461 2.0297 40 1 5.1468 3.6397 4.0705 41 1 4.3920 2.0885 4.5089 42 1 5.6866 2.7673 5.5247 43 1 7.0618 0.6408 5.2649 44 1 5.6689 -0.0046 4.3642 45 1 6.9774 -0.5026 1.4071 46 1 7.6114 -1.9527 2.2219 47 1 5.9700 -1.3708 2.5903 48 1 9.8937 -0.7502 0.6083 49 1 4.0206 0.3800 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754317364.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:50 Heat of formation + Delta-G solvation = -62.988491 kcal Electronic energy + Delta-G solvation = -30769.295700 eV Core-core repulsion = 26698.225012 eV Total energy + Delta-G solvation = -4071.070688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.47255 -39.42382 -37.88582 -36.90647 -36.09516 -33.94513 -32.28821 -31.04852 -30.50232 -30.00391 -27.75880 -27.32850 -26.15259 -25.66663 -25.42986 -22.69213 -22.17524 -21.42627 -20.29987 -19.75622 -18.16536 -16.94631 -16.88999 -16.61509 -16.17092 -15.88171 -15.72650 -15.59113 -15.08738 -14.84646 -14.39634 -13.94748 -13.92128 -13.63331 -13.57803 -13.28254 -13.13355 -12.86278 -12.74207 -12.43191 -12.10270 -12.05464 -11.89530 -11.63380 -11.39723 -11.25534 -11.20145 -11.05015 -10.98211 -10.82743 -10.74039 -10.52092 -10.17206 -9.93615 -9.86755 -9.83056 -9.36332 -8.75818 -8.56858 -8.29915 -8.26895 -6.72525 -5.71514 -3.17051 1.14121 1.38560 3.02402 3.23535 3.37259 3.40274 3.48004 3.49459 3.64208 4.39363 4.53317 4.60642 4.66111 4.89788 4.91870 4.95990 5.17775 5.23186 5.24071 5.33690 5.38332 5.43829 5.46582 5.51833 5.52826 5.58066 5.74636 5.76950 5.87174 5.91937 6.04989 6.15216 6.17223 6.29562 6.35474 6.49558 6.52294 6.58226 6.61769 6.67226 6.93009 7.11787 7.26420 7.27581 7.33364 7.65891 7.83041 8.17551 8.41176 8.87516 9.25109 9.87310 10.35754 11.34021 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.003750 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.214736 B = 7464.756781 C = 7980.888131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.126 3.874 4 C -0.206 4.206 5 C -0.084 4.084 6 C -0.124 4.124 7 C -0.068 4.068 8 C 0.113 3.887 9 H 0.099 0.901 10 O -0.350 6.350 11 C 0.028 3.972 12 C 0.528 3.472 13 O -0.529 6.529 14 N -0.692 5.692 15 C 0.119 3.881 16 H 0.086 0.914 17 C -0.159 4.159 18 C 0.143 3.857 19 N -0.597 5.597 20 C 0.162 3.838 21 C -0.254 4.254 22 H 0.068 0.932 23 C 0.006 3.994 24 N -0.906 5.906 25 Si 0.903 3.097 26 H -0.278 1.278 27 H -0.291 1.291 28 H -0.291 1.291 29 C -0.140 4.140 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.041 0.959 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.394 0.606 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.042 0.958 45 H 0.029 0.971 46 H 0.043 0.957 47 H -0.005 1.005 48 H 0.250 0.750 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.007 3.652 -4.987 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.081 3.919 4 C -0.225 4.225 5 C -0.102 4.102 6 C -0.142 4.142 7 C -0.069 4.069 8 C 0.051 3.949 9 H 0.117 0.883 10 O -0.267 6.267 11 C -0.069 4.069 12 C 0.312 3.688 13 O -0.405 6.405 14 N -0.343 5.343 15 C 0.012 3.988 16 H 0.104 0.896 17 C -0.218 4.218 18 C 0.014 3.986 19 N -0.319 5.319 20 C 0.017 3.983 21 C -0.384 4.384 22 H 0.086 0.914 23 C -0.193 4.193 24 N -0.551 5.551 25 Si 0.733 3.267 26 H -0.204 1.204 27 H -0.217 1.217 28 H -0.218 1.218 29 C -0.158 4.158 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.149 0.851 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.229 0.771 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.060 0.940 45 H 0.048 0.952 46 H 0.062 0.938 47 H 0.014 0.986 48 H 0.060 0.940 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.370 4.304 -4.808 19.471 hybrid contribution 0.522 -0.597 -0.402 0.889 sum -17.848 3.707 -5.210 18.959 Atomic orbital electron populations 1.23038 0.78567 1.03881 1.01190 1.86096 1.21192 1.26809 1.88783 1.18870 0.92026 0.84167 0.96854 1.21238 0.99852 0.92465 1.08911 1.20921 0.94425 0.96947 0.97885 1.20955 0.93325 0.98719 1.01222 1.19922 0.94878 0.92954 0.99131 1.20788 0.89849 0.91810 0.92449 0.88317 1.88013 1.87918 1.31521 1.19297 1.22891 0.99880 1.02168 0.81964 1.19731 0.79415 0.84037 0.85621 1.90662 1.41763 1.29022 1.79053 1.45646 1.58887 1.18530 1.11206 1.21870 0.96727 1.00066 0.80137 0.89570 1.22148 0.99203 1.00485 0.99945 1.21204 0.93561 0.89221 0.94578 1.43892 1.02421 1.49511 1.36104 1.20841 0.92183 0.94506 0.90760 1.19227 0.81393 1.42862 0.94896 0.91379 1.25001 0.97894 1.01421 0.94956 1.70038 1.33428 1.53269 0.98346 0.86204 0.85598 0.77239 0.77619 1.20355 1.21747 1.21759 1.20281 0.91649 0.98025 1.05868 0.88273 0.92700 0.92816 0.85617 0.85722 0.85069 0.94038 0.89315 0.93356 0.77136 0.92951 0.93242 0.92103 0.92230 0.94018 0.95233 0.93830 0.98643 0.93967 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.65 10.50 -19.42 -0.20 -3.86 16 3 C 0.13 1.55 6.69 -39.22 -0.26 1.29 16 4 C -0.21 -2.21 9.04 -39.43 -0.36 -2.56 16 5 C -0.08 -0.93 10.04 -39.61 -0.40 -1.33 16 6 C -0.12 -1.66 9.34 -39.56 -0.37 -2.03 16 7 C -0.07 -0.98 4.90 -104.65 -0.51 -1.49 16 8 C 0.11 1.90 2.73 -29.03 -0.08 1.82 16 9 H 0.10 1.62 7.69 -51.93 -0.40 1.22 16 10 O -0.35 -5.99 9.03 -55.09 -0.50 -6.49 16 11 C 0.03 0.36 10.81 101.05 1.09 1.45 16 12 C 0.53 10.72 7.13 -10.98 -0.08 10.65 16 13 O -0.53 -12.71 16.17 -14.30 -0.23 -12.94 16 14 N -0.69 -13.16 4.37 -53.81 -0.23 -13.39 16 15 C 0.12 2.31 2.88 -67.93 -0.20 2.12 16 16 H 0.09 2.01 7.58 -51.93 -0.39 1.61 16 17 C -0.16 -2.53 9.48 37.16 0.35 -2.17 16 18 C 0.14 2.81 5.33 -4.05 -0.02 2.78 16 19 N -0.60 -14.37 2.78 -181.12 -0.50 -14.87 16 20 C 0.16 3.74 7.61 59.85 0.46 4.20 16 21 C -0.25 -6.90 9.66 -15.06 -0.15 -7.04 16 22 H 0.07 1.83 7.85 -52.49 -0.41 1.42 16 23 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 24 N -0.91 -25.88 10.66 55.49 0.59 -25.28 16 25 Si 0.90 22.13 29.57 -169.99 -5.03 17.10 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 C -0.14 -1.87 9.47 -39.44 -0.37 -2.25 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 32 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 33 H 0.13 1.02 6.30 -52.49 -0.33 0.69 16 34 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.13 1.83 7.63 -52.48 -0.40 1.43 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 39 H 0.39 6.98 7.02 -40.82 -0.29 6.69 16 40 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 1.14 8.03 -51.93 -0.42 0.72 16 44 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 45 H 0.03 0.72 6.90 -51.93 -0.36 0.36 16 46 H 0.04 1.11 7.30 -51.93 -0.38 0.73 16 47 H 0.00 -0.10 7.84 -51.93 -0.41 -0.50 16 48 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 49 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 403.13 15.07 6.08 6.08 Total: -1.00 -33.57 403.13 -7.95 -41.51 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.93 Total: 5.46 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 0.01 Total: 6.69 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.15 Total: -53.55 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.93 Total: -23.29 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.57 -7.95 -41.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754317364.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.475 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds