Wall clock time and date at job start Sat Apr 11 2020 04:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 116.99937 * 2 1 4 4 C 1.38755 * 120.05497 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94285 * 180.02562 * 4 3 2 6 6 C 1.38280 * 120.05613 * 0.02670 * 5 4 3 7 7 C 1.38247 * 120.11303 * 359.95444 * 6 5 4 8 8 C 1.50698 * 119.97241 * 179.74957 * 7 6 5 9 9 H 1.09003 * 109.47038 * 204.99750 * 8 7 6 10 10 O 1.42899 * 109.47048 * 324.99550 * 8 7 6 11 11 C 1.42896 * 114.00093 * 269.99919 * 10 8 7 12 12 C 1.50707 * 109.47180 * 84.99482 * 8 7 6 13 13 O 1.21277 * 119.99984 * 245.00038 * 12 8 7 14 14 N 1.34776 * 119.99481 * 65.00214 * 12 8 7 15 15 C 1.46506 * 119.99467 * 179.97438 * 14 12 8 16 16 H 1.08995 * 109.47283 * 325.00065 * 15 14 12 17 17 C 1.52999 * 109.47235 * 85.00125 * 15 14 12 18 18 C 1.52993 * 109.46854 * 204.99936 * 15 14 12 19 19 N 1.46500 * 109.47541 * 55.00196 * 18 15 14 20 20 C 1.46501 * 119.99852 * 270.00273 * 19 18 15 21 21 C 1.36938 * 120.00054 * 89.99632 * 19 18 15 22 22 H 1.07989 * 120.00012 * 23.62266 * 21 19 18 23 23 C 1.38816 * 119.99758 * 203.62044 * 21 19 18 24 24 N 1.31619 * 120.00050 * 11.31383 * 23 21 19 25 25 Si 1.86799 * 119.99618 * 191.31993 * 23 21 19 26 26 H 1.48497 * 109.47468 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47074 * 120.00010 * 25 23 21 28 28 H 1.48495 * 109.46867 * 239.99718 * 25 23 21 29 29 C 1.38158 * 120.05373 * 0.02562 * 7 6 5 30 30 H 1.09005 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47609 * 299.99933 * 1 2 3 32 32 H 1.09004 * 109.47638 * 60.00069 * 1 2 3 33 33 H 1.08000 * 120.02747 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.96807 * 179.97438 * 5 4 3 35 35 H 1.08003 * 119.94509 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.47012 * 60.00168 * 11 10 8 37 37 H 1.09004 * 109.47223 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.47217 * 299.99995 * 11 10 8 39 39 H 0.96999 * 120.00556 * 359.97438 * 14 12 8 40 40 H 1.09007 * 109.47025 * 299.99753 * 17 15 14 41 41 H 1.08995 * 109.47466 * 59.99470 * 17 15 14 42 42 H 1.08994 * 109.47345 * 180.02562 * 17 15 14 43 43 H 1.09002 * 109.47396 * 175.00255 * 18 15 14 44 44 H 1.08997 * 109.47396 * 295.00026 * 18 15 14 45 45 H 1.09003 * 109.47442 * 94.52754 * 20 19 18 46 46 H 1.09005 * 109.47011 * 214.53425 * 20 19 18 47 47 H 1.09003 * 109.46939 * 334.52747 * 20 19 18 48 48 H 0.97004 * 119.99634 * 180.02562 * 24 23 21 49 49 H 1.08006 * 120.02874 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5171 -0.0018 8 6 5.5607 2.5982 -0.0093 9 1 5.9715 1.6864 -0.4428 10 8 5.9732 3.7235 -0.7875 11 6 6.1761 3.4302 -2.1712 12 6 6.0624 2.7533 1.4033 13 8 6.6307 3.7715 1.7366 14 7 5.8796 1.7604 2.2961 15 6 6.3679 1.9109 3.6692 16 1 7.2990 2.4774 3.6637 17 6 5.3231 2.6549 4.5033 18 6 6.6154 0.5288 4.2768 19 7 7.5247 -0.2286 3.4132 20 6 6.9864 -1.0674 2.3394 21 6 8.8778 -0.1526 3.6097 22 1 9.2681 0.1259 4.5773 23 6 9.7477 -0.4334 2.5649 24 7 9.2859 -0.5536 1.3383 25 14 11.5736 -0.6409 2.9001 26 1 11.8344 -0.4592 4.3507 27 1 12.0011 -2.0019 2.4875 28 1 12.3367 0.3727 2.1287 29 6 3.4310 1.2849 -0.0008 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.2127 2.3203 0.0014 34 1 1.3338 4.5114 0.0000 35 1 3.7921 4.6381 -0.0025 36 1 5.2461 3.0628 -2.6050 37 1 6.4870 4.3355 -2.6927 38 1 6.9496 2.6688 -2.2716 39 1 5.4247 0.9461 2.0297 40 1 5.1468 3.6397 4.0705 41 1 4.3920 2.0885 4.5089 42 1 5.6866 2.7673 5.5247 43 1 7.0618 0.6408 5.2649 44 1 5.6689 -0.0046 4.3642 45 1 6.9774 -0.5026 1.4071 46 1 7.6114 -1.9527 2.2219 47 1 5.9700 -1.3708 2.5903 48 1 9.8937 -0.7502 0.6083 49 1 4.0206 0.3800 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754317364.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:49 Heat of formation + Delta-G solvation = -84.050418 kcal Electronic energy + Delta-G solvation = -30770.209014 eV Core-core repulsion = 26698.225012 eV Total energy + Delta-G solvation = -4071.984001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.57664 -40.65953 -39.14757 -38.04752 -37.72670 -35.73917 -33.58068 -32.78833 -31.66627 -31.26266 -28.81697 -28.06354 -27.97167 -27.40925 -26.66822 -23.80327 -23.55528 -22.77558 -21.81176 -21.27559 -19.14138 -18.78911 -18.33095 -17.93899 -17.10939 -17.00796 -16.76772 -16.67774 -16.58573 -16.37510 -15.83423 -15.62152 -15.21056 -15.10008 -14.81790 -14.58790 -14.47155 -14.24743 -13.76792 -13.73097 -13.46652 -13.38839 -13.09795 -12.85666 -12.82394 -12.70160 -12.67647 -12.52995 -12.31740 -12.28916 -12.02799 -12.00865 -11.84370 -11.81287 -11.71133 -11.18191 -10.69294 -10.62048 -9.96022 -9.85262 -9.18733 -8.71481 -7.81449 -5.27614 0.18451 0.44657 1.43270 1.45992 1.54428 1.64507 1.92510 2.39119 2.51439 2.67269 3.10917 3.33316 3.51761 3.70227 3.81286 3.84147 3.97400 4.15279 4.19044 4.32677 4.35480 4.41068 4.45583 4.46443 4.48514 4.52795 4.53886 4.60882 4.76257 4.76275 4.78861 4.83798 4.89579 4.96274 4.99794 5.17967 5.26773 5.35907 5.37905 5.42075 5.52582 5.66126 5.68160 5.71666 5.77724 5.98994 6.35792 6.46355 6.63494 7.19136 7.31445 7.90255 8.31686 9.21365 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.003750 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.214736 B = 7464.756781 C = 7980.888131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.124 3.876 4 C -0.196 4.196 5 C -0.076 4.076 6 C -0.139 4.139 7 C -0.076 4.076 8 C 0.122 3.878 9 H 0.095 0.905 10 O -0.377 6.377 11 C 0.024 3.976 12 C 0.519 3.481 13 O -0.577 6.577 14 N -0.685 5.685 15 C 0.122 3.878 16 H 0.039 0.961 17 C -0.145 4.145 18 C 0.143 3.857 19 N -0.611 5.611 20 C 0.175 3.825 21 C -0.260 4.260 22 H 0.067 0.933 23 C -0.047 4.047 24 N -0.930 5.930 25 Si 0.958 3.042 26 H -0.268 1.268 27 H -0.289 1.289 28 H -0.301 1.301 29 C -0.152 4.152 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.118 0.882 36 H 0.059 0.941 37 H 0.108 0.892 38 H 0.041 0.959 39 H 0.402 0.598 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.011 0.989 46 H 0.013 0.987 47 H 0.034 0.966 48 H 0.244 0.756 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.048 3.301 -4.453 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.078 3.922 4 C -0.214 4.214 5 C -0.094 4.094 6 C -0.157 4.157 7 C -0.077 4.077 8 C 0.060 3.940 9 H 0.112 0.888 10 O -0.294 6.294 11 C -0.072 4.072 12 C 0.304 3.696 13 O -0.456 6.456 14 N -0.335 5.335 15 C 0.015 3.985 16 H 0.057 0.943 17 C -0.203 4.203 18 C 0.016 3.984 19 N -0.333 5.333 20 C 0.030 3.970 21 C -0.390 4.390 22 H 0.085 0.915 23 C -0.243 4.243 24 N -0.577 5.577 25 Si 0.788 3.212 26 H -0.192 1.192 27 H -0.216 1.216 28 H -0.228 1.228 29 C -0.171 4.171 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.176 0.824 34 H 0.172 0.828 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.127 0.873 38 H 0.060 0.940 39 H 0.237 0.763 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.029 0.971 46 H 0.031 0.969 47 H 0.052 0.948 48 H 0.053 0.947 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.450 3.926 -4.249 22.216 hybrid contribution 1.356 -0.509 -0.549 1.549 sum -20.094 3.417 -4.798 20.939 Atomic orbital electron populations 1.23372 0.76251 1.05591 1.02462 1.86079 1.23619 1.26520 1.88573 1.18949 0.91692 0.85179 0.96357 1.21581 1.01421 0.91459 1.06975 1.21221 0.93412 0.98470 0.96288 1.20972 0.94595 0.97776 1.02383 1.19629 0.93012 0.93892 1.01139 1.20620 0.91811 0.91420 0.90150 0.88771 1.87967 1.88260 1.32063 1.21157 1.23084 1.00681 1.03157 0.80283 1.20430 0.78562 0.83429 0.87130 1.90620 1.43956 1.30826 1.80237 1.45639 1.58239 1.18508 1.11151 1.21734 0.96111 0.99669 0.80988 0.94291 1.22008 0.98980 0.99371 0.99975 1.21371 0.94147 0.88984 0.93882 1.44089 1.02170 1.50446 1.36613 1.20628 0.93416 0.92888 0.90097 1.19514 0.83172 1.41586 0.94745 0.91476 1.25661 1.01330 1.02252 0.95033 1.70185 1.34085 1.54618 0.98766 0.85327 0.81501 0.76639 0.77735 1.19205 1.21586 1.22828 1.20252 0.92652 0.97360 1.06819 0.86586 0.91480 0.91344 0.82361 0.82785 0.86353 0.92246 0.87338 0.93986 0.76260 0.94410 0.90803 0.90130 0.91464 0.90718 0.97063 0.96852 0.94760 0.94656 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.92 10.50 -92.42 -0.97 -7.89 16 3 C 0.12 2.78 6.69 22.51 0.15 2.93 16 4 C -0.20 -3.53 9.04 22.37 0.20 -3.33 16 5 C -0.08 -1.48 10.04 22.25 0.22 -1.26 16 6 C -0.14 -3.64 9.34 22.28 0.21 -3.43 16 7 C -0.08 -2.18 4.90 -19.88 -0.10 -2.28 16 8 C 0.12 4.26 2.73 29.10 0.08 4.34 16 9 H 0.09 3.28 7.69 -2.39 -0.02 3.26 16 10 O -0.38 -13.40 9.03 -129.99 -1.17 -14.58 16 11 C 0.02 0.63 10.81 113.37 1.23 1.85 16 12 C 0.52 21.96 7.13 87.66 0.63 22.58 16 13 O -0.58 -29.21 16.17 15.97 0.26 -28.95 16 14 N -0.69 -26.43 4.37 -442.54 -1.93 -28.36 16 15 C 0.12 4.74 2.88 44.99 0.13 4.87 16 16 H 0.04 1.89 7.58 -2.39 -0.02 1.87 16 17 C -0.14 -4.38 9.48 71.98 0.68 -3.70 16 18 C 0.14 5.43 5.33 86.38 0.46 5.89 16 19 N -0.61 -29.28 2.78 -726.94 -2.02 -31.30 16 20 C 0.17 8.06 7.61 127.77 0.97 9.03 16 21 C -0.26 -14.21 9.66 84.03 0.81 -13.40 16 22 H 0.07 3.62 7.85 -2.92 -0.02 3.59 16 23 C -0.05 -2.67 5.13 84.86 0.44 -2.24 16 24 N -0.93 -54.63 10.66 21.65 0.23 -54.40 16 25 Si 0.96 46.30 29.57 68.60 2.03 48.33 16 26 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 27 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 28 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 29 C -0.15 -3.99 9.47 22.36 0.21 -3.78 16 30 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.07 0.58 7.66 -2.38 -0.02 0.56 16 32 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 33 H 0.16 1.78 6.30 -2.91 -0.02 1.76 16 34 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.12 3.36 7.63 -2.91 -0.02 3.34 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.04 1.13 8.08 -2.39 -0.02 1.11 16 39 H 0.40 14.18 7.02 -92.71 -0.65 13.53 16 40 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.07 2.46 8.03 -2.39 -0.02 2.44 16 44 H 0.07 2.37 7.86 -2.39 -0.02 2.35 16 45 H 0.01 0.56 6.90 -2.39 -0.02 0.54 16 46 H 0.01 0.66 7.30 -2.38 -0.02 0.65 16 47 H 0.03 1.29 7.84 -2.39 -0.02 1.27 16 48 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 49 H 0.13 3.42 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -75.50 403.13 4.14 -71.36 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.29 Total: 26.41 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 7.43 Total: 19.38 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -3.72 Total: -114.06 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -1.89 Total: -51.42 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -75.50 4.14 -71.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754317364.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.691 kcal (2) G-P(sol) polarization free energy of solvation -75.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds