Wall clock time and date at job start Sat Apr 11 2020 04:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99838 * 2 1 4 4 C 1.52997 * 109.46964 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47449 * 64.99921 * 4 3 2 6 6 C 1.35657 * 116.99716 * 180.02562 * 5 4 3 7 7 C 1.38706 * 120.15301 * 359.96821 * 6 5 4 8 8 C 1.38051 * 120.08560 * 180.02562 * 7 6 5 9 9 C 1.38551 * 120.38875 * 0.02562 * 8 7 6 10 10 C 1.37781 * 120.30014 * 359.97438 * 9 8 7 11 11 C 1.39711 * 119.90815 * 359.97438 * 10 9 8 12 12 C 1.47533 * 120.19051 * 180.02562 * 11 10 9 13 13 O 1.21585 * 120.00245 * 131.09439 * 12 11 10 14 14 N 1.34777 * 120.00132 * 311.09812 * 12 11 10 15 15 C 1.46496 * 120.00021 * 4.42316 * 14 12 11 16 16 C 1.46501 * 120.00072 * 184.42943 * 14 12 11 17 17 C 1.52999 * 109.47509 * 89.99703 * 16 14 12 18 18 N 1.46501 * 109.47509 * 180.02562 * 17 16 14 19 19 C 1.46498 * 119.99833 * 270.00113 * 18 17 16 20 20 C 1.36932 * 120.00011 * 89.99800 * 18 17 16 21 21 H 1.08010 * 119.99795 * 24.17526 * 20 18 17 22 22 C 1.38810 * 120.00130 * 204.17274 * 20 18 17 23 23 N 1.31618 * 119.99987 * 9.24330 * 22 20 18 24 24 Si 1.86797 * 120.00112 * 189.24019 * 22 20 18 25 25 H 1.48499 * 109.47442 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47290 * 120.00368 * 24 22 20 27 27 H 1.48501 * 109.47220 * 239.99882 * 24 22 20 28 28 H 1.09005 * 109.47500 * 300.00278 * 1 2 3 29 29 H 1.09004 * 109.47367 * 59.99896 * 1 2 3 30 30 H 1.08999 * 109.47456 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47524 * 59.99837 * 3 2 1 32 32 H 1.09002 * 109.46785 * 300.00096 * 3 2 1 33 33 H 1.08997 * 109.46816 * 304.99273 * 4 3 2 34 34 H 1.09003 * 109.46934 * 185.00026 * 4 3 2 35 35 H 1.07999 * 119.95747 * 0.03064 * 7 6 5 36 36 H 1.07999 * 119.80694 * 180.28488 * 8 7 6 37 37 H 1.08001 * 119.84986 * 179.97438 * 9 8 7 38 38 H 1.08003 * 120.04761 * 180.02562 * 10 9 8 39 39 H 1.09001 * 109.47414 * 92.98066 * 15 14 12 40 40 H 1.09003 * 109.47669 * 212.98118 * 15 14 12 41 41 H 1.08998 * 109.47450 * 332.98072 * 15 14 12 42 42 H 1.09003 * 109.47288 * 209.99648 * 16 14 12 43 43 H 1.08992 * 109.47385 * 329.99477 * 16 14 12 44 44 H 1.09003 * 109.46800 * 300.00243 * 17 16 14 45 45 H 1.09003 * 109.47333 * 59.99922 * 17 16 14 46 46 H 1.08996 * 109.47448 * 95.07963 * 19 18 17 47 47 H 1.09007 * 109.46974 * 215.07666 * 19 18 17 48 48 H 1.09005 * 109.47261 * 335.07454 * 19 18 17 49 49 H 0.96996 * 120.00398 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.2995 0.3982 -1.3833 7 6 6.1816 0.7938 -0.3886 8 6 7.5396 0.6089 -0.5545 9 6 8.0318 0.0289 -1.7125 10 6 7.1699 -0.3699 -2.7107 11 6 5.7931 -0.1897 -2.5555 12 6 4.8646 -0.6150 -3.6202 13 8 3.8903 -1.2879 -3.3441 14 7 5.0963 -0.2576 -4.8989 15 6 6.3196 0.4698 -5.2460 16 6 4.1247 -0.5965 -5.9417 17 6 3.1065 0.5373 -6.0781 18 7 2.1346 0.1982 -7.1205 19 6 2.3860 0.5863 -8.5106 20 6 0.9912 -0.4816 -6.7956 21 1 0.6021 -0.4337 -5.7892 22 6 0.3322 -1.2322 -7.7595 23 7 0.8962 -1.4407 -8.9303 24 14 -1.3549 -1.9463 -7.3951 25 1 -1.7650 -1.5699 -6.0184 26 1 -2.3401 -1.4103 -8.3685 27 1 -1.3013 -3.4259 -7.5091 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8513 0.5684 0.8410 34 1 3.9784 2.1766 0.0889 35 1 5.8056 1.2469 0.5167 36 1 8.2221 0.9143 0.2248 37 1 9.0958 -0.1112 -1.8333 38 1 7.5579 -0.8219 -3.6116 39 1 7.0917 -0.2393 -5.5445 40 1 6.1149 1.1526 -6.0707 41 1 6.6626 1.0375 -4.3810 42 1 4.6434 -0.7350 -6.8904 43 1 3.6086 -1.5178 -5.6720 44 1 2.5878 0.6759 -5.1295 45 1 3.6226 1.4587 -6.3480 46 1 2.8521 -0.2440 -9.0411 47 1 1.4424 0.8417 -8.9929 48 1 3.0506 1.4501 -8.5322 49 1 0.4357 -1.9649 -9.6041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482652607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:08 Heat of formation + Delta-G solvation = -49.836755 kcal Electronic energy + Delta-G solvation = -29978.963080 eV Core-core repulsion = 25908.462695 eV Total energy + Delta-G solvation = -4070.500385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -40.64700 -39.05172 -37.97170 -37.12583 -35.88283 -34.70757 -31.93863 -31.27192 -30.87196 -29.55494 -28.33537 -26.40238 -26.35937 -25.76601 -24.24787 -23.80762 -22.44723 -21.73490 -20.49202 -19.37948 -18.14023 -17.09039 -16.91464 -16.62555 -16.41049 -15.79918 -15.63645 -15.34035 -15.11047 -15.00616 -14.78859 -14.40711 -14.29363 -13.60971 -13.39589 -13.15701 -12.98735 -12.88580 -12.63775 -12.50028 -12.28532 -12.26115 -12.03275 -11.75522 -11.67471 -11.40991 -11.22565 -11.17834 -10.99675 -10.78887 -10.74454 -10.43715 -10.02890 -9.84904 -9.76681 -9.66580 -9.41739 -9.06310 -8.51363 -8.34181 -8.19623 -6.63125 -5.62771 -3.09560 0.91975 1.25816 3.00446 3.06375 3.36539 3.46696 3.53033 3.56918 3.62038 3.73295 4.50383 4.59654 4.63551 4.72384 4.82775 4.86598 4.98585 5.01488 5.14391 5.15232 5.26879 5.30553 5.36624 5.40386 5.50953 5.54625 5.57360 5.65285 5.71932 5.76979 5.82449 5.92003 6.07001 6.10562 6.26345 6.36935 6.40330 6.54381 6.76673 6.80219 6.92021 7.04098 7.18587 7.29733 7.44685 7.80515 7.83919 7.94434 8.51082 8.66124 9.35163 9.96434 10.45273 11.42440 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009681 B = 0.003827 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.651609 B = 7314.498718 C = 9618.912972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.062 3.938 4 C 0.059 3.941 5 O -0.283 6.283 6 C 0.178 3.822 7 C -0.219 4.219 8 C -0.064 4.064 9 C -0.168 4.168 10 C -0.052 4.052 11 C -0.155 4.155 12 C 0.556 3.444 13 O -0.511 6.511 14 N -0.610 5.610 15 C 0.076 3.924 16 C 0.095 3.905 17 C 0.145 3.855 18 N -0.599 5.599 19 C 0.164 3.836 20 C -0.247 4.247 21 H 0.069 0.931 22 C 0.001 3.999 23 N -0.912 5.912 24 Si 0.904 3.096 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.290 1.290 28 H 0.037 0.963 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.046 0.954 45 H 0.034 0.966 46 H 0.030 0.970 47 H 0.043 0.957 48 H -0.005 1.005 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.969 8.850 18.411 24.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.015 4.015 4 C -0.016 4.016 5 O -0.194 6.194 6 C 0.130 3.870 7 C -0.238 4.238 8 C -0.082 4.082 9 C -0.186 4.186 10 C -0.070 4.070 11 C -0.159 4.159 12 C 0.342 3.658 13 O -0.386 6.386 14 N -0.345 5.345 15 C -0.068 4.068 16 C -0.029 4.029 17 C 0.016 3.984 18 N -0.322 5.322 19 C 0.019 3.981 20 C -0.377 4.377 21 H 0.087 0.913 22 C -0.196 4.196 23 N -0.558 5.558 24 Si 0.735 3.265 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.217 1.217 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.048 0.952 47 H 0.062 0.938 48 H 0.014 0.986 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.259 8.195 18.248 23.999 hybrid contribution -0.835 -0.151 0.249 0.885 sum 12.424 8.044 18.497 23.689 Atomic orbital electron populations 1.22765 0.80646 1.03217 0.99832 1.88005 1.19964 1.26458 1.95350 1.22526 0.91247 0.86344 1.01363 1.22909 0.94389 0.97827 0.86491 1.86321 1.19107 1.75488 1.38500 1.18951 0.83043 0.92504 0.92486 1.21183 0.94195 1.08489 0.99947 1.21034 0.94429 0.95675 0.97053 1.20950 0.99882 1.03253 0.94543 1.21247 0.90743 0.96055 0.98981 1.19387 0.94101 1.07215 0.95195 1.18020 0.85084 0.80507 0.82146 1.90857 1.28820 1.37080 1.81798 1.47958 1.21984 1.56849 1.07662 1.21911 0.86835 0.96408 1.01624 1.22575 0.89927 1.02339 0.88040 1.21108 0.90190 0.93885 0.93188 1.43956 1.19376 1.65499 1.03409 1.20822 0.98103 0.94302 0.84838 1.19311 0.99436 1.22114 0.96825 0.91279 1.25057 0.99416 0.98136 0.97030 1.70056 1.37166 1.42824 1.05709 0.86165 0.84053 0.78691 0.77617 1.20261 1.21763 1.21673 0.94404 0.93540 0.89362 0.91278 0.91828 0.91017 0.90480 0.85121 0.85601 0.85448 0.84694 0.92995 0.91178 0.91085 0.91481 0.89567 0.93581 0.94806 0.95163 0.93834 0.98641 0.93927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.61 10.67 -40.08 -0.43 -6.04 16 3 C 0.06 0.70 6.32 37.16 0.23 0.93 16 4 C 0.06 0.65 5.12 37.16 0.19 0.84 16 5 O -0.28 -4.51 9.14 -36.32 -0.33 -4.85 16 6 C 0.18 2.55 6.67 -38.70 -0.26 2.29 16 7 C -0.22 -2.29 9.03 -39.48 -0.36 -2.65 16 8 C -0.06 -0.56 10.03 -39.53 -0.40 -0.95 16 9 C -0.17 -1.52 10.02 -39.63 -0.40 -1.91 16 10 C -0.05 -0.59 7.60 -39.20 -0.30 -0.88 16 11 C -0.16 -2.35 4.91 -104.85 -0.51 -2.86 16 12 C 0.56 10.62 6.95 -12.47 -0.09 10.54 16 13 O -0.51 -12.30 16.09 -4.04 -0.07 -12.36 16 14 N -0.61 -10.63 2.87 -182.82 -0.53 -11.15 16 15 C 0.08 0.93 9.09 59.84 0.54 1.47 16 16 C 0.10 2.00 5.78 -4.04 -0.02 1.98 16 17 C 0.14 3.29 6.03 -4.04 -0.02 3.26 16 18 N -0.60 -16.00 2.92 -181.11 -0.53 -16.53 16 19 C 0.16 4.16 9.01 59.85 0.54 4.70 16 20 C -0.25 -7.25 9.66 -15.06 -0.15 -7.40 16 21 H 0.07 2.06 7.84 -52.48 -0.41 1.65 16 22 C 0.00 0.04 5.17 -17.43 -0.09 -0.05 16 23 N -0.91 -27.42 10.58 55.49 0.59 -26.83 16 24 Si 0.90 23.09 29.56 -169.99 -5.03 18.06 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.70 7.66 -51.93 -0.40 0.30 16 34 H 0.08 0.59 7.66 -51.93 -0.40 0.20 16 35 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 36 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.14 1.32 6.55 -52.48 -0.34 0.98 16 39 H 0.05 0.53 7.55 -51.93 -0.39 0.14 16 40 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 41 H 0.07 0.77 5.67 -51.93 -0.29 0.47 16 42 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 43 H 0.09 2.15 7.36 -51.93 -0.38 1.77 16 44 H 0.05 1.13 8.03 -51.93 -0.42 0.71 16 45 H 0.03 0.69 7.86 -51.93 -0.41 0.28 16 46 H 0.03 0.82 7.33 -51.93 -0.38 0.44 16 47 H 0.04 1.18 7.31 -51.92 -0.38 0.80 16 48 H 0.00 -0.11 7.84 -51.93 -0.41 -0.52 16 49 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 401.85 15.07 6.06 6.06 Total: -1.00 -37.38 401.85 -8.11 -45.49 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -7.88 Total: -2.64 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 0.03 Total: 10.79 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.47 Total: -54.51 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.82 Total: -23.25 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.03 Total: 18.06 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.38 -8.11 -45.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482652607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.348 kcal (2) G-P(sol) polarization free energy of solvation -37.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds