Wall clock time and date at job start Sat Apr 11 2020 04:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99838 * 2 1 4 4 C 1.52997 * 109.46964 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47449 * 64.99921 * 4 3 2 6 6 C 1.35657 * 116.99716 * 180.02562 * 5 4 3 7 7 C 1.38706 * 120.15301 * 359.96821 * 6 5 4 8 8 C 1.38051 * 120.08560 * 180.02562 * 7 6 5 9 9 C 1.38551 * 120.38875 * 0.02562 * 8 7 6 10 10 C 1.37781 * 120.30014 * 359.97438 * 9 8 7 11 11 C 1.39711 * 119.90815 * 359.97438 * 10 9 8 12 12 C 1.47533 * 120.19051 * 180.02562 * 11 10 9 13 13 O 1.21585 * 120.00245 * 131.09439 * 12 11 10 14 14 N 1.34777 * 120.00132 * 311.09812 * 12 11 10 15 15 C 1.46496 * 120.00021 * 4.42316 * 14 12 11 16 16 C 1.46501 * 120.00072 * 184.42943 * 14 12 11 17 17 C 1.52999 * 109.47509 * 89.99703 * 16 14 12 18 18 N 1.46501 * 109.47509 * 180.02562 * 17 16 14 19 19 C 1.46498 * 119.99833 * 270.00113 * 18 17 16 20 20 C 1.36932 * 120.00011 * 89.99800 * 18 17 16 21 21 H 1.08010 * 119.99795 * 24.17526 * 20 18 17 22 22 C 1.38810 * 120.00130 * 204.17274 * 20 18 17 23 23 N 1.31618 * 119.99987 * 9.24330 * 22 20 18 24 24 Si 1.86797 * 120.00112 * 189.24019 * 22 20 18 25 25 H 1.48499 * 109.47442 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47290 * 120.00368 * 24 22 20 27 27 H 1.48501 * 109.47220 * 239.99882 * 24 22 20 28 28 H 1.09005 * 109.47500 * 300.00278 * 1 2 3 29 29 H 1.09004 * 109.47367 * 59.99896 * 1 2 3 30 30 H 1.08999 * 109.47456 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47524 * 59.99837 * 3 2 1 32 32 H 1.09002 * 109.46785 * 300.00096 * 3 2 1 33 33 H 1.08997 * 109.46816 * 304.99273 * 4 3 2 34 34 H 1.09003 * 109.46934 * 185.00026 * 4 3 2 35 35 H 1.07999 * 119.95747 * 0.03064 * 7 6 5 36 36 H 1.07999 * 119.80694 * 180.28488 * 8 7 6 37 37 H 1.08001 * 119.84986 * 179.97438 * 9 8 7 38 38 H 1.08003 * 120.04761 * 180.02562 * 10 9 8 39 39 H 1.09001 * 109.47414 * 92.98066 * 15 14 12 40 40 H 1.09003 * 109.47669 * 212.98118 * 15 14 12 41 41 H 1.08998 * 109.47450 * 332.98072 * 15 14 12 42 42 H 1.09003 * 109.47288 * 209.99648 * 16 14 12 43 43 H 1.08992 * 109.47385 * 329.99477 * 16 14 12 44 44 H 1.09003 * 109.46800 * 300.00243 * 17 16 14 45 45 H 1.09003 * 109.47333 * 59.99922 * 17 16 14 46 46 H 1.08996 * 109.47448 * 95.07963 * 19 18 17 47 47 H 1.09007 * 109.46974 * 215.07666 * 19 18 17 48 48 H 1.09005 * 109.47261 * 335.07454 * 19 18 17 49 49 H 0.96996 * 120.00398 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.2995 0.3982 -1.3833 7 6 6.1816 0.7938 -0.3886 8 6 7.5396 0.6089 -0.5545 9 6 8.0318 0.0289 -1.7125 10 6 7.1699 -0.3699 -2.7107 11 6 5.7931 -0.1897 -2.5555 12 6 4.8646 -0.6150 -3.6202 13 8 3.8903 -1.2879 -3.3441 14 7 5.0963 -0.2576 -4.8989 15 6 6.3196 0.4698 -5.2460 16 6 4.1247 -0.5965 -5.9417 17 6 3.1065 0.5373 -6.0781 18 7 2.1346 0.1982 -7.1205 19 6 2.3860 0.5863 -8.5106 20 6 0.9912 -0.4816 -6.7956 21 1 0.6021 -0.4337 -5.7892 22 6 0.3322 -1.2322 -7.7595 23 7 0.8962 -1.4407 -8.9303 24 14 -1.3549 -1.9463 -7.3951 25 1 -1.7650 -1.5699 -6.0184 26 1 -2.3401 -1.4103 -8.3685 27 1 -1.3013 -3.4259 -7.5091 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8513 0.5684 0.8410 34 1 3.9784 2.1766 0.0889 35 1 5.8056 1.2469 0.5167 36 1 8.2221 0.9143 0.2248 37 1 9.0958 -0.1112 -1.8333 38 1 7.5579 -0.8219 -3.6116 39 1 7.0917 -0.2393 -5.5445 40 1 6.1149 1.1526 -6.0707 41 1 6.6626 1.0375 -4.3810 42 1 4.6434 -0.7350 -6.8904 43 1 3.6086 -1.5178 -5.6720 44 1 2.5878 0.6759 -5.1295 45 1 3.6226 1.4587 -6.3480 46 1 2.8521 -0.2440 -9.0411 47 1 1.4424 0.8417 -8.9929 48 1 3.0506 1.4501 -8.5322 49 1 0.4357 -1.9649 -9.6041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482652607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:07 Heat of formation + Delta-G solvation = -75.184588 kcal Electronic energy + Delta-G solvation = -29980.062245 eV Core-core repulsion = 25908.462695 eV Total energy + Delta-G solvation = -4071.599550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.69195 -40.30799 -38.96812 -38.07940 -37.79290 -36.36570 -33.62208 -32.54698 -31.90944 -30.49610 -29.93705 -27.94996 -27.59379 -27.34096 -25.78973 -24.74001 -23.78763 -22.56929 -22.36222 -20.65859 -19.12422 -18.85596 -18.21322 -17.86590 -17.56565 -17.02244 -16.89682 -16.68702 -16.30907 -16.10817 -15.91639 -15.65698 -15.54782 -15.33394 -14.96762 -14.67402 -14.21633 -14.13816 -13.91423 -13.87476 -13.62846 -13.33844 -13.14147 -13.05027 -12.84401 -12.82680 -12.75985 -12.55353 -12.45228 -12.28898 -12.09595 -12.05301 -12.03404 -11.83990 -11.64055 -10.84914 -10.73096 -10.72444 -9.94259 -9.76558 -9.19959 -8.78178 -7.88371 -5.38239 0.04058 0.44587 1.39165 1.41507 1.52437 1.73734 2.07210 2.18866 2.47768 2.75310 2.79910 3.25570 3.53900 3.74176 3.78641 3.91525 4.04581 4.06406 4.16133 4.21421 4.26140 4.30900 4.39523 4.42241 4.43276 4.45632 4.46358 4.56531 4.57296 4.68035 4.71415 4.77891 4.82353 4.86292 4.90367 4.98154 5.14141 5.24711 5.30733 5.37514 5.50651 5.54785 5.62090 5.70874 5.82332 6.13424 6.29293 6.38765 6.51488 7.11977 7.24010 7.80763 8.22718 9.14398 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009681 B = 0.003827 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.651609 B = 7314.498718 C = 9618.912972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.419 6.419 3 C 0.055 3.945 4 C 0.053 3.947 5 O -0.330 6.330 6 C 0.151 3.849 7 C -0.216 4.216 8 C -0.050 4.050 9 C -0.157 4.157 10 C -0.052 4.052 11 C -0.190 4.190 12 C 0.550 3.450 13 O -0.581 6.581 14 N -0.608 5.608 15 C 0.071 3.929 16 C 0.114 3.886 17 C 0.153 3.847 18 N -0.616 5.616 19 C 0.178 3.822 20 C -0.265 4.265 21 H 0.051 0.949 22 C -0.044 4.044 23 N -0.932 5.932 24 Si 0.965 3.035 25 H -0.276 1.276 26 H -0.279 1.279 27 H -0.289 1.289 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.165 0.835 38 H 0.147 0.853 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.035 0.965 44 H 0.016 0.984 45 H 0.066 0.934 46 H 0.010 0.990 47 H 0.018 0.982 48 H 0.036 0.964 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.095 10.647 20.284 28.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.338 6.338 3 C -0.021 4.021 4 C -0.021 4.021 5 O -0.243 6.243 6 C 0.104 3.896 7 C -0.235 4.235 8 C -0.068 4.068 9 C -0.175 4.175 10 C -0.070 4.070 11 C -0.194 4.194 12 C 0.340 3.660 13 O -0.461 6.461 14 N -0.341 5.341 15 C -0.071 4.071 16 C -0.011 4.011 17 C 0.025 3.975 18 N -0.339 5.339 19 C 0.033 3.967 20 C -0.396 4.396 21 H 0.069 0.931 22 C -0.240 4.240 23 N -0.579 5.579 24 Si 0.793 3.207 25 H -0.201 1.201 26 H -0.205 1.205 27 H -0.216 1.216 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.128 0.872 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.130 0.870 35 H 0.174 0.826 36 H 0.185 0.815 37 H 0.183 0.817 38 H 0.165 0.835 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.054 0.946 44 H 0.035 0.965 45 H 0.084 0.916 46 H 0.029 0.971 47 H 0.037 0.963 48 H 0.054 0.946 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 16.449 10.038 20.121 27.860 hybrid contribution -1.684 -0.642 -0.241 1.818 sum 14.764 9.396 19.880 26.485 Atomic orbital electron populations 1.22871 0.79668 1.03443 1.00838 1.87949 1.21402 1.28888 1.95600 1.22816 0.91756 0.85152 1.02401 1.23225 0.94089 0.99535 0.85297 1.86270 1.20647 1.76527 1.40834 1.19317 0.83093 0.93794 0.93388 1.21506 0.94558 1.07787 0.99635 1.21583 0.94125 0.93411 0.97650 1.21395 1.01271 1.01346 0.93493 1.21429 0.89188 0.95939 1.00439 1.19273 0.94896 1.10525 0.94725 1.18827 0.84837 0.79168 0.83202 1.90803 1.32112 1.40265 1.82920 1.47969 1.22761 1.56823 1.06570 1.22243 0.84970 0.96992 1.02875 1.21973 0.90412 0.99267 0.89495 1.21075 0.89802 0.95643 0.90944 1.44137 1.19783 1.65468 1.04562 1.20620 0.97387 0.94959 0.83693 1.19396 1.00986 1.22920 0.96277 0.93086 1.25748 1.02782 0.98526 0.96931 1.70189 1.38311 1.43197 1.06187 0.85234 0.80104 0.77724 0.77611 1.20099 1.20534 1.21555 0.91041 0.94769 0.89683 0.87156 0.93607 0.90013 0.87014 0.82560 0.81487 0.81748 0.83503 0.90294 0.90132 0.89168 0.90199 0.94636 0.96519 0.91558 0.97136 0.96304 0.94556 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.42 -13.07 10.67 -144.34 -1.54 -14.61 16 3 C 0.05 1.25 6.32 71.98 0.45 1.71 16 4 C 0.05 1.13 5.12 71.98 0.37 1.50 16 5 O -0.33 -11.01 9.14 -72.84 -0.67 -11.68 16 6 C 0.15 4.29 6.67 22.84 0.15 4.45 16 7 C -0.22 -3.87 9.03 22.34 0.20 -3.66 16 8 C -0.05 -0.62 10.03 22.30 0.22 -0.40 16 9 C -0.16 -2.10 10.02 22.24 0.22 -1.88 16 10 C -0.05 -1.04 7.60 22.52 0.17 -0.87 16 11 C -0.19 -5.77 4.91 -20.01 -0.10 -5.87 16 12 C 0.55 22.23 6.95 86.69 0.60 22.83 16 13 O -0.58 -30.66 16.09 4.94 0.08 -30.58 16 14 N -0.61 -21.71 2.87 -850.57 -2.44 -24.15 16 15 C 0.07 1.59 9.09 127.77 1.16 2.75 16 16 C 0.11 5.01 5.78 86.38 0.50 5.51 16 17 C 0.15 7.19 6.03 86.38 0.52 7.71 16 18 N -0.62 -33.96 2.92 -726.92 -2.12 -36.08 16 19 C 0.18 9.12 9.01 127.77 1.15 10.27 16 20 C -0.27 -16.31 9.66 84.03 0.81 -15.50 16 21 H 0.05 3.25 7.84 -2.91 -0.02 3.23 16 22 C -0.04 -2.68 5.17 84.86 0.44 -2.24 16 23 N -0.93 -57.45 10.58 21.65 0.23 -57.22 16 24 Si 0.97 48.90 29.56 68.60 2.03 50.93 16 25 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 26 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 28 H 0.07 1.22 8.14 -2.38 -0.02 1.21 16 29 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.52 7.66 -2.39 -0.02 1.50 16 34 H 0.11 1.50 7.66 -2.39 -0.02 1.48 16 35 H 0.16 1.86 6.30 -2.91 -0.02 1.84 16 36 H 0.17 0.78 8.06 -2.91 -0.02 0.75 16 37 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.15 2.48 6.55 -2.91 -0.02 2.46 16 39 H 0.08 1.38 7.55 -2.39 -0.02 1.36 16 40 H 0.08 1.66 8.09 -2.39 -0.02 1.64 16 41 H 0.09 1.72 5.67 -2.39 -0.01 1.71 16 42 H 0.08 3.26 8.07 -2.39 -0.02 3.25 16 43 H 0.03 1.91 7.36 -2.39 -0.02 1.89 16 44 H 0.02 0.86 8.03 -2.39 -0.02 0.84 16 45 H 0.07 2.66 7.86 -2.39 -0.02 2.64 16 46 H 0.01 0.57 7.33 -2.39 -0.02 0.55 16 47 H 0.02 1.02 7.31 -2.38 -0.02 1.00 16 48 H 0.04 1.53 7.84 -2.38 -0.02 1.52 16 49 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -90.01 401.85 4.62 -85.38 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.93 Total: 9.77 kcal Atomic # 6 Polarization: 20.11 SS G_CDS: 8.13 Total: 28.24 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -4.34 Total: -117.45 kcal Atomic # 8 Polarization: -54.73 SS G_CDS: -2.13 Total: -56.86 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.03 Total: 50.93 kcal Total: -90.01 4.62 -85.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482652607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.198 kcal (2) G-P(sol) polarization free energy of solvation -90.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds