Wall clock time and date at job start Sat Apr 11 2020 04:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34944 * 126.54361 * 2 1 4 4 O 1.35211 * 125.49358 * 359.97438 * 3 2 1 5 5 N 1.31538 * 109.01496 * 180.27008 * 3 2 1 6 6 C 1.33222 * 109.76194 * 359.72724 * 5 3 2 7 7 C 1.36723 * 107.96257 * 359.97438 * 6 5 3 8 8 C 1.46380 * 126.82776 * 180.02562 * 7 6 5 9 9 O 1.21732 * 120.00179 * 185.18907 * 8 7 6 10 10 N 1.34778 * 119.99784 * 5.18648 * 8 7 6 11 11 C 1.46501 * 120.00003 * 184.41391 * 10 8 7 12 12 C 1.52998 * 109.47086 * 180.02562 * 11 10 8 13 13 H 1.08995 * 109.58852 * 296.95012 * 12 11 10 14 14 C 1.53193 * 109.58437 * 176.67180 * 12 11 10 15 15 C 1.53045 * 109.31199 * 185.57805 * 14 12 11 16 16 C 1.53045 * 109.53638 * 61.36517 * 15 14 12 17 17 C 1.52998 * 109.49794 * 58.58706 * 16 15 14 18 18 C 1.52999 * 109.49535 * 178.64991 * 16 15 14 19 19 C 1.53190 * 109.31247 * 298.63553 * 16 15 14 20 20 N 1.46923 * 108.77729 * 54.63322 * 19 16 15 21 21 C 1.36934 * 120.62996 * 126.39407 * 20 19 16 22 22 H 1.08004 * 120.00181 * 210.49498 * 21 20 19 23 23 C 1.38814 * 120.00224 * 30.48947 * 21 20 19 24 24 N 1.31616 * 120.00302 * 214.02728 * 23 21 20 25 25 Si 1.86805 * 119.99736 * 34.02928 * 23 21 20 26 26 H 1.48501 * 109.47096 * 92.11750 * 25 23 21 27 27 H 1.48495 * 109.47076 * 212.11792 * 25 23 21 28 28 H 1.48503 * 109.47027 * 332.11814 * 25 23 21 29 29 H 1.08999 * 109.47274 * 264.57083 * 1 2 3 30 30 H 1.08997 * 109.47258 * 24.57295 * 1 2 3 31 31 H 1.09004 * 109.47062 * 144.57196 * 1 2 3 32 32 H 0.96695 * 113.99952 * 270.29483 * 4 3 2 33 33 H 1.07999 * 126.01814 * 180.02562 * 6 5 3 34 34 H 0.96997 * 120.00252 * 4.41309 * 10 8 7 35 35 H 1.09003 * 109.46865 * 300.00335 * 11 10 8 36 36 H 1.08999 * 109.47128 * 59.99620 * 11 10 8 37 37 H 1.09005 * 109.49970 * 305.52852 * 14 12 11 38 38 H 1.09002 * 109.49908 * 65.59442 * 14 12 11 39 39 H 1.09001 * 109.45612 * 181.37977 * 15 14 12 40 40 H 1.08997 * 109.45655 * 301.35563 * 15 14 12 41 41 H 1.08996 * 109.47612 * 59.99744 * 17 16 15 42 42 H 1.09004 * 109.47105 * 180.02562 * 17 16 15 43 43 H 1.09006 * 109.47112 * 299.99851 * 17 16 15 44 44 H 1.09005 * 109.47099 * 59.99904 * 18 16 15 45 45 H 1.08995 * 109.47252 * 179.97438 * 18 16 15 46 46 H 1.09004 * 109.47128 * 300.00276 * 18 16 15 47 47 H 1.08996 * 109.58577 * 174.42843 * 19 16 15 48 48 H 1.09006 * 109.58489 * 294.70841 * 19 16 15 49 49 H 0.97002 * 120.00314 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2684 1.0841 0.0000 4 8 1.8515 2.3704 -0.0005 5 7 3.5227 0.6880 -0.0059 6 6 3.5747 -0.6432 -0.0038 7 6 2.2915 -1.1152 0.0043 8 6 1.8726 -2.5178 0.0096 9 8 0.6919 -2.8007 -0.0786 10 7 2.7941 -3.4959 0.1122 11 6 2.3855 -4.8998 0.0204 12 6 3.6144 -5.7993 0.1680 13 1 4.3032 -5.6151 -0.6564 14 6 3.1799 -7.2683 0.1557 15 6 4.3924 -8.1571 0.4425 16 6 4.9500 -7.8299 1.8297 17 6 3.8616 -8.0491 2.8824 18 6 6.1413 -8.7421 2.1293 19 6 5.4045 -6.3673 1.8610 20 7 4.2827 -5.5145 1.4451 21 6 3.8679 -4.4740 2.2328 22 1 2.8309 -4.1722 2.2268 23 6 4.7802 -3.8072 3.0390 24 7 4.4023 -3.3322 4.2069 25 14 6.5442 -3.5840 2.4664 26 1 6.6727 -2.2881 1.7526 27 1 7.4512 -3.5935 3.6421 28 1 6.9110 -4.6929 1.5493 29 1 -0.3634 -0.0972 1.0230 30 1 -0.3633 0.9346 -0.4273 31 1 -0.3633 -0.8374 -0.5957 32 1 1.7262 2.7428 -0.8840 33 1 4.4723 -1.2438 -0.0071 34 1 3.7279 -3.2704 0.2467 35 1 1.6741 -5.1238 0.8153 36 1 1.9174 -5.0794 -0.9474 37 1 2.4211 -7.4298 0.9214 38 1 2.7686 -7.5178 -0.8224 39 1 4.0908 -9.2040 0.4100 40 1 5.1606 -7.9769 -0.3094 41 1 3.5365 -9.0892 2.8578 42 1 4.2591 -7.8156 3.8701 43 1 3.0136 -7.3982 2.6692 44 1 6.9169 -8.5848 1.3797 45 1 6.5384 -8.5085 3.1170 46 1 5.8175 -9.7826 2.1041 47 1 5.7103 -6.1013 2.8728 48 1 6.2429 -6.2305 1.1780 49 1 5.0399 -2.8666 4.7705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089680921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:22 Heat of formation + Delta-G solvation = 19.467280 kcal Electronic energy + Delta-G solvation = -31193.257036 eV Core-core repulsion = 27158.054650 eV Total energy + Delta-G solvation = -4035.202386 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.04107 -39.37419 -38.44413 -37.27907 -35.30351 -33.99433 -33.14100 -32.33470 -30.74316 -29.49593 -27.32894 -26.94855 -26.72770 -25.52738 -23.98913 -22.65721 -22.24722 -21.39901 -20.11387 -19.60403 -18.54734 -18.35423 -17.34947 -16.57755 -16.01931 -15.79576 -15.56798 -15.04787 -14.81500 -14.43351 -14.14412 -13.93453 -13.89956 -13.67603 -13.47672 -13.30300 -12.92673 -12.72309 -12.58725 -12.56654 -12.31478 -12.13979 -11.91990 -11.60127 -11.54570 -11.34386 -11.16144 -10.86560 -10.66182 -10.57162 -10.36582 -10.10627 -9.97976 -9.69643 -9.65904 -9.59684 -9.43454 -9.38887 -8.57329 -8.40692 -8.14933 -6.92863 -6.07846 -3.33311 1.43416 2.32805 2.82729 3.35036 3.47483 3.52094 3.68069 3.80630 3.88658 4.52186 4.76092 4.79090 4.98283 5.14566 5.25159 5.27501 5.30940 5.31971 5.41983 5.51549 5.58706 5.62591 5.71231 5.84631 5.94060 6.02852 6.06651 6.08763 6.15301 6.21080 6.29020 6.32144 6.36493 6.38983 6.50734 6.52582 6.61988 6.62698 6.72709 6.78167 6.87037 6.96052 7.04286 7.14903 7.54172 7.90210 7.92416 8.13646 8.31502 8.70796 8.90871 9.67637 10.09597 11.05734 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.004026 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.717416 B = 6953.906259 C = 7995.053779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.430 5.430 3 C 0.383 3.617 4 O -0.440 6.440 5 N -0.487 5.487 6 C 0.057 3.943 7 C -0.060 4.060 8 C 0.589 3.411 9 O -0.568 6.568 10 N -0.675 5.675 11 C 0.138 3.862 12 C 0.160 3.840 13 H 0.036 0.964 14 C -0.130 4.130 15 C -0.096 4.096 16 C -0.089 4.089 17 C -0.126 4.126 18 C -0.138 4.138 19 C 0.157 3.843 20 N -0.595 5.595 21 C -0.280 4.280 22 H 0.089 0.911 23 C 0.049 3.951 24 N -0.874 5.874 25 Si 0.820 3.180 26 H -0.287 1.287 27 H -0.296 1.296 28 H -0.251 1.251 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.398 0.602 33 H 0.184 0.816 34 H 0.415 0.585 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.033 0.967 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.047 0.953 47 H 0.065 0.935 48 H 0.028 0.972 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.484 -1.056 -10.972 11.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.123 5.123 3 C 0.084 3.916 4 O -0.240 6.240 5 N -0.216 5.216 6 C -0.097 4.097 7 C -0.176 4.176 8 C 0.375 3.625 9 O -0.450 6.450 10 N -0.325 5.325 11 C 0.015 3.985 12 C 0.053 3.947 13 H 0.054 0.946 14 C -0.169 4.169 15 C -0.134 4.134 16 C -0.090 4.090 17 C -0.183 4.183 18 C -0.196 4.196 19 C 0.031 3.969 20 N -0.319 5.319 21 C -0.407 4.407 22 H 0.106 0.894 23 C -0.154 4.154 24 N -0.513 5.513 25 Si 0.646 3.354 26 H -0.214 1.214 27 H -0.223 1.223 28 H -0.175 1.175 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.255 0.745 33 H 0.201 0.799 34 H 0.253 0.747 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.083 0.917 48 H 0.045 0.955 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.825 -0.555 -10.268 10.972 hybrid contribution 0.814 0.133 -0.326 0.887 sum -3.011 -0.422 -10.594 11.021 Atomic orbital electron populations 1.22169 0.75521 1.04460 1.04805 1.45558 1.08227 1.05646 1.52857 1.20181 0.84632 0.81198 1.05617 1.84845 1.87108 1.18245 1.33784 1.70251 1.16369 1.13053 1.21939 1.22546 0.95825 0.89947 1.01415 1.20717 0.90811 0.88572 1.17531 1.16530 0.85683 0.82913 0.77340 1.90737 1.16974 1.84062 1.53191 1.45700 1.11576 1.05289 1.69980 1.21309 0.97255 0.79392 1.00574 1.20776 0.92349 0.92196 0.89337 0.94631 1.21990 0.98304 0.95945 1.00710 1.21414 0.97295 0.98124 0.96541 1.21116 0.95326 0.97600 0.94998 1.21712 0.99292 0.99332 0.97975 1.21813 0.97913 0.98725 1.01129 1.21449 0.89504 0.87177 0.98752 1.44313 1.37346 1.32112 1.18125 1.18822 0.94582 1.08630 1.18685 0.89394 1.25272 0.96793 0.97693 0.95656 1.70057 1.35840 1.37982 1.07451 0.87875 0.88239 0.79574 0.79675 1.21395 1.22276 1.17514 0.90105 0.89951 0.87806 0.74517 0.79913 0.74652 0.91012 0.92249 0.91178 0.92733 0.93146 0.92839 0.94770 0.93365 0.91128 0.93325 0.92957 0.93410 0.91693 0.95453 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 10.56 59.84 0.63 1.53 16 2 N -0.43 -6.78 3.20 -122.12 -0.39 -7.18 16 3 C 0.38 6.04 9.01 -89.59 -0.81 5.23 16 4 O -0.44 -5.31 13.44 -17.33 -0.23 -5.54 16 5 N -0.49 -8.81 11.22 -14.62 -0.16 -8.98 16 6 C 0.06 1.01 11.35 -17.50 -0.20 0.82 16 7 C -0.06 -1.08 6.92 -81.97 -0.57 -1.65 16 8 C 0.59 11.14 7.77 -12.98 -0.10 11.03 16 9 O -0.57 -11.54 15.02 5.16 0.08 -11.46 16 10 N -0.67 -12.28 3.68 -61.71 -0.23 -12.50 16 11 C 0.14 2.37 4.45 -4.04 -0.02 2.35 16 12 C 0.16 2.68 3.05 -67.60 -0.21 2.48 16 13 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 14 C -0.13 -1.89 5.03 -26.61 -0.13 -2.03 16 15 C -0.10 -1.37 4.71 -26.68 -0.13 -1.49 16 16 C -0.09 -1.42 0.77 -154.39 -0.12 -1.54 16 17 C -0.13 -2.12 7.98 37.16 0.30 -1.82 16 18 C -0.14 -1.93 8.48 37.16 0.32 -1.62 16 19 C 0.16 3.05 3.05 -3.71 -0.01 3.04 16 20 N -0.59 -11.97 2.09 -164.78 -0.34 -12.31 16 21 C -0.28 -6.70 7.07 -15.06 -0.11 -6.80 16 22 H 0.09 2.34 6.00 -52.48 -0.31 2.03 16 23 C 0.05 1.26 4.85 -17.43 -0.08 1.18 16 24 N -0.87 -25.02 13.97 55.49 0.78 -24.24 16 25 Si 0.82 19.28 26.65 -169.99 -4.53 14.75 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.25 -5.49 4.70 56.52 0.27 -5.22 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.08 0.71 8.03 -51.93 -0.42 0.30 16 31 H 0.10 1.35 6.73 -51.93 -0.35 1.00 16 32 H 0.40 2.42 9.06 45.56 0.41 2.84 16 33 H 0.18 3.05 7.48 -52.49 -0.39 2.65 16 34 H 0.41 7.73 6.10 -40.82 -0.25 7.48 16 35 H 0.07 1.39 7.59 -51.93 -0.39 0.99 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.09 6.34 -51.93 -0.33 0.76 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.32 5.97 -51.93 -0.31 1.01 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 1.43 5.97 -51.93 -0.31 1.12 16 48 H 0.03 0.54 6.52 -51.93 -0.34 0.21 16 49 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -31.59 376.90 -7.50 -39.09 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -6.91 Total: 12.00 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: -1.23 Total: 10.70 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: -0.35 Total: -65.21 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.16 Total: -17.01 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.53 Total: 14.75 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.59 -7.50 -39.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089680921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.561 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds