Wall clock time and date at job start Sat Apr 11 2020 04:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34944 * 126.54361 * 2 1 4 4 O 1.35211 * 125.49358 * 359.97438 * 3 2 1 5 5 N 1.31538 * 109.01496 * 180.27008 * 3 2 1 6 6 C 1.33222 * 109.76194 * 359.72724 * 5 3 2 7 7 C 1.36723 * 107.96257 * 359.97438 * 6 5 3 8 8 C 1.46380 * 126.82776 * 180.02562 * 7 6 5 9 9 O 1.21732 * 120.00179 * 185.18907 * 8 7 6 10 10 N 1.34778 * 119.99784 * 5.18648 * 8 7 6 11 11 C 1.46501 * 120.00003 * 184.41391 * 10 8 7 12 12 C 1.52998 * 109.47086 * 180.02562 * 11 10 8 13 13 H 1.08995 * 109.58852 * 296.95012 * 12 11 10 14 14 C 1.53193 * 109.58437 * 176.67180 * 12 11 10 15 15 C 1.53045 * 109.31199 * 185.57805 * 14 12 11 16 16 C 1.53045 * 109.53638 * 61.36517 * 15 14 12 17 17 C 1.52998 * 109.49794 * 58.58706 * 16 15 14 18 18 C 1.52999 * 109.49535 * 178.64991 * 16 15 14 19 19 C 1.53190 * 109.31247 * 298.63553 * 16 15 14 20 20 N 1.46923 * 108.77729 * 54.63322 * 19 16 15 21 21 C 1.36934 * 120.62996 * 126.39407 * 20 19 16 22 22 H 1.08004 * 120.00181 * 210.49498 * 21 20 19 23 23 C 1.38814 * 120.00224 * 30.48947 * 21 20 19 24 24 N 1.31616 * 120.00302 * 214.02728 * 23 21 20 25 25 Si 1.86805 * 119.99736 * 34.02928 * 23 21 20 26 26 H 1.48501 * 109.47096 * 92.11750 * 25 23 21 27 27 H 1.48495 * 109.47076 * 212.11792 * 25 23 21 28 28 H 1.48503 * 109.47027 * 332.11814 * 25 23 21 29 29 H 1.08999 * 109.47274 * 264.57083 * 1 2 3 30 30 H 1.08997 * 109.47258 * 24.57295 * 1 2 3 31 31 H 1.09004 * 109.47062 * 144.57196 * 1 2 3 32 32 H 0.96695 * 113.99952 * 270.29483 * 4 3 2 33 33 H 1.07999 * 126.01814 * 180.02562 * 6 5 3 34 34 H 0.96997 * 120.00252 * 4.41309 * 10 8 7 35 35 H 1.09003 * 109.46865 * 300.00335 * 11 10 8 36 36 H 1.08999 * 109.47128 * 59.99620 * 11 10 8 37 37 H 1.09005 * 109.49970 * 305.52852 * 14 12 11 38 38 H 1.09002 * 109.49908 * 65.59442 * 14 12 11 39 39 H 1.09001 * 109.45612 * 181.37977 * 15 14 12 40 40 H 1.08997 * 109.45655 * 301.35563 * 15 14 12 41 41 H 1.08996 * 109.47612 * 59.99744 * 17 16 15 42 42 H 1.09004 * 109.47105 * 180.02562 * 17 16 15 43 43 H 1.09006 * 109.47112 * 299.99851 * 17 16 15 44 44 H 1.09005 * 109.47099 * 59.99904 * 18 16 15 45 45 H 1.08995 * 109.47252 * 179.97438 * 18 16 15 46 46 H 1.09004 * 109.47128 * 300.00276 * 18 16 15 47 47 H 1.08996 * 109.58577 * 174.42843 * 19 16 15 48 48 H 1.09006 * 109.58489 * 294.70841 * 19 16 15 49 49 H 0.97002 * 120.00314 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2684 1.0841 0.0000 4 8 1.8515 2.3704 -0.0005 5 7 3.5227 0.6880 -0.0059 6 6 3.5747 -0.6432 -0.0038 7 6 2.2915 -1.1152 0.0043 8 6 1.8726 -2.5178 0.0096 9 8 0.6919 -2.8007 -0.0786 10 7 2.7941 -3.4959 0.1122 11 6 2.3855 -4.8998 0.0204 12 6 3.6144 -5.7993 0.1680 13 1 4.3032 -5.6151 -0.6564 14 6 3.1799 -7.2683 0.1557 15 6 4.3924 -8.1571 0.4425 16 6 4.9500 -7.8299 1.8297 17 6 3.8616 -8.0491 2.8824 18 6 6.1413 -8.7421 2.1293 19 6 5.4045 -6.3673 1.8610 20 7 4.2827 -5.5145 1.4451 21 6 3.8679 -4.4740 2.2328 22 1 2.8309 -4.1722 2.2268 23 6 4.7802 -3.8072 3.0390 24 7 4.4023 -3.3322 4.2069 25 14 6.5442 -3.5840 2.4664 26 1 6.6727 -2.2881 1.7526 27 1 7.4512 -3.5935 3.6421 28 1 6.9110 -4.6929 1.5493 29 1 -0.3634 -0.0972 1.0230 30 1 -0.3633 0.9346 -0.4273 31 1 -0.3633 -0.8374 -0.5957 32 1 1.7262 2.7428 -0.8840 33 1 4.4723 -1.2438 -0.0071 34 1 3.7279 -3.2704 0.2467 35 1 1.6741 -5.1238 0.8153 36 1 1.9174 -5.0794 -0.9474 37 1 2.4211 -7.4298 0.9214 38 1 2.7686 -7.5178 -0.8224 39 1 4.0908 -9.2040 0.4100 40 1 5.1606 -7.9769 -0.3094 41 1 3.5365 -9.0892 2.8578 42 1 4.2591 -7.8156 3.8701 43 1 3.0136 -7.3982 2.6692 44 1 6.9169 -8.5848 1.3797 45 1 6.5384 -8.5085 3.1170 46 1 5.8175 -9.7826 2.1041 47 1 5.7103 -6.1013 2.8728 48 1 6.2429 -6.2305 1.1780 49 1 5.0399 -2.8666 4.7705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089680921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:21 Heat of formation + Delta-G solvation = -4.664002 kcal Electronic energy + Delta-G solvation = -31194.303447 eV Core-core repulsion = 27158.054650 eV Total energy + Delta-G solvation = -4036.248797 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.31555 -40.81845 -39.85726 -38.35264 -36.74137 -35.26916 -34.82049 -33.79321 -32.43274 -30.81304 -28.60781 -28.07282 -28.03449 -27.23955 -25.39497 -24.21178 -23.55645 -22.59502 -21.60915 -21.00425 -19.81053 -19.68536 -18.75760 -18.04018 -17.42436 -17.16043 -17.09541 -16.54556 -16.33930 -15.70834 -15.52900 -15.32909 -15.27556 -15.06425 -14.82492 -14.65429 -14.39249 -14.17112 -13.98456 -13.74926 -13.65792 -13.35965 -13.20024 -13.01887 -12.78595 -12.74563 -12.68494 -12.48741 -12.22932 -12.03148 -11.85053 -11.49726 -11.35403 -11.19636 -11.06835 -10.94395 -10.91510 -10.84882 -10.37860 -9.97780 -9.52422 -8.67519 -8.10033 -5.28730 0.12660 1.13175 1.42795 1.52615 1.54895 1.57430 2.25189 2.44554 2.56843 2.76020 3.04705 3.46447 3.65975 3.79769 3.95681 3.97552 4.00162 4.13726 4.26673 4.30266 4.30963 4.41408 4.52141 4.58965 4.64396 4.75353 4.80379 4.90674 4.92023 4.95764 5.04333 5.09179 5.11586 5.16598 5.19303 5.25822 5.27073 5.35103 5.50804 5.51341 5.58217 5.60047 5.63941 5.81269 5.99952 6.33617 6.51533 6.60869 6.69300 7.05428 7.22203 7.78578 8.21907 9.07873 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.004026 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.717416 B = 6953.906259 C = 7995.053779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.431 5.431 3 C 0.400 3.600 4 O -0.436 6.436 5 N -0.519 5.519 6 C 0.053 3.947 7 C -0.084 4.084 8 C 0.588 3.412 9 O -0.587 6.587 10 N -0.676 5.676 11 C 0.141 3.859 12 C 0.158 3.842 13 H 0.056 0.944 14 C -0.125 4.125 15 C -0.091 4.091 16 C -0.086 4.086 17 C -0.120 4.120 18 C -0.134 4.134 19 C 0.154 3.846 20 N -0.603 5.603 21 C -0.234 4.234 22 H 0.056 0.944 23 C -0.005 4.005 24 N -0.933 5.933 25 Si 0.872 3.128 26 H -0.292 1.292 27 H -0.319 1.319 28 H -0.221 1.221 29 H 0.074 0.926 30 H 0.125 0.875 31 H 0.095 0.905 32 H 0.428 0.572 33 H 0.186 0.814 34 H 0.412 0.588 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.024 0.976 43 H 0.044 0.956 44 H 0.060 0.940 45 H 0.041 0.959 46 H 0.069 0.931 47 H 0.032 0.968 48 H 0.034 0.966 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.348 -2.403 -13.871 14.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.124 5.124 3 C 0.100 3.900 4 O -0.240 6.240 5 N -0.249 5.249 6 C -0.101 4.101 7 C -0.200 4.200 8 C 0.375 3.625 9 O -0.471 6.471 10 N -0.325 5.325 11 C 0.018 3.982 12 C 0.053 3.947 13 H 0.074 0.926 14 C -0.164 4.164 15 C -0.129 4.129 16 C -0.088 4.088 17 C -0.177 4.177 18 C -0.192 4.192 19 C 0.029 3.971 20 N -0.328 5.328 21 C -0.363 4.363 22 H 0.074 0.926 23 C -0.203 4.203 24 N -0.577 5.577 25 Si 0.700 3.300 26 H -0.220 1.220 27 H -0.247 1.247 28 H -0.145 1.145 29 H 0.092 0.908 30 H 0.143 0.857 31 H 0.114 0.886 32 H 0.290 0.710 33 H 0.203 0.797 34 H 0.250 0.750 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.044 0.956 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.060 0.940 46 H 0.088 0.912 47 H 0.050 0.950 48 H 0.052 0.948 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.695 -1.936 -13.251 13.892 hybrid contribution 0.628 0.588 0.535 1.013 sum -3.067 -1.348 -12.715 13.149 Atomic orbital electron populations 1.22380 0.73640 1.06479 1.04633 1.45739 1.09335 1.04974 1.52324 1.20272 0.84198 0.82297 1.03236 1.84810 1.86667 1.16159 1.36397 1.70234 1.17908 1.13032 1.23681 1.22652 0.96059 0.90275 1.01163 1.20615 0.91388 0.88696 1.19310 1.16691 0.85443 0.83499 0.76856 1.90712 1.17595 1.84479 1.54278 1.45708 1.11289 1.05779 1.69767 1.21365 0.97096 0.78963 1.00814 1.21015 0.92028 0.93820 0.87816 0.92603 1.21950 0.98397 0.93942 1.02140 1.21407 0.97136 0.99328 0.94992 1.21063 0.95949 0.95461 0.96318 1.21644 0.98614 1.00333 0.97140 1.21775 0.97120 0.99346 1.00945 1.21445 0.89321 0.89436 0.96925 1.44413 1.37684 1.31257 1.19440 1.18584 0.92809 1.07984 1.16913 0.92626 1.25683 0.99795 0.98924 0.95871 1.70177 1.36785 1.41476 1.09304 0.87044 0.84164 0.80077 0.78675 1.21965 1.24728 1.14456 0.90775 0.85704 0.88594 0.71049 0.79688 0.75020 0.93897 0.89690 0.92584 0.89478 0.90657 0.91503 0.92088 0.95645 0.93686 0.92120 0.94006 0.91160 0.94980 0.94834 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.63 10.56 127.77 1.35 2.98 16 2 N -0.43 -13.32 3.20 -652.00 -2.09 -15.41 16 3 C 0.40 12.14 9.01 179.99 1.62 13.76 16 4 O -0.44 -9.44 13.44 -84.93 -1.14 -10.58 16 5 N -0.52 -18.62 11.22 -313.64 -3.52 -22.14 16 6 C 0.05 1.91 11.35 84.13 0.95 2.86 16 7 C -0.08 -3.04 6.92 39.80 0.28 -2.76 16 8 C 0.59 22.61 7.77 86.36 0.67 23.28 16 9 O -0.59 -24.21 15.02 -4.45 -0.07 -24.27 16 10 N -0.68 -24.80 3.68 -467.35 -1.72 -26.52 16 11 C 0.14 4.73 4.45 86.38 0.38 5.11 16 12 C 0.16 4.99 3.05 44.97 0.14 5.12 16 13 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 14 C -0.13 -3.22 5.03 30.67 0.15 -3.07 16 15 C -0.09 -2.19 4.71 30.62 0.14 -2.04 16 16 C -0.09 -2.56 0.77 -52.10 -0.04 -2.60 16 17 C -0.12 -3.92 7.98 71.98 0.57 -3.34 16 18 C -0.13 -3.32 8.48 71.98 0.61 -2.71 16 19 C 0.15 5.79 3.05 86.36 0.26 6.05 16 20 N -0.60 -23.96 2.09 -675.25 -1.41 -25.37 16 21 C -0.23 -11.51 7.07 84.03 0.59 -10.91 16 22 H 0.06 3.11 6.00 -2.91 -0.02 3.10 16 23 C -0.01 -0.29 4.85 84.86 0.41 0.13 16 24 N -0.93 -56.50 13.97 21.65 0.30 -56.20 16 25 Si 0.87 41.15 26.65 68.60 1.83 42.98 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.32 -16.19 7.11 99.48 0.71 -15.48 16 28 H -0.22 -9.22 4.70 99.48 0.47 -8.75 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.12 1.80 8.03 -2.39 -0.02 1.78 16 31 H 0.10 2.43 6.73 -2.38 -0.02 2.42 16 32 H 0.43 3.78 9.06 -74.06 -0.67 3.11 16 33 H 0.19 6.33 7.48 -2.91 -0.02 6.31 16 34 H 0.41 15.50 6.10 -92.71 -0.57 14.93 16 35 H 0.04 1.69 7.59 -2.39 -0.02 1.67 16 36 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.06 1.63 6.34 -2.38 -0.02 1.62 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.04 1.68 5.97 -2.38 -0.01 1.67 16 44 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 45 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.03 1.42 5.97 -2.39 -0.01 1.40 16 48 H 0.03 1.24 6.52 -2.38 -0.02 1.22 16 49 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -72.40 376.90 -0.20 -72.60 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -0.49 Total: 33.05 kcal Atomic # 6 Polarization: 23.75 SS G_CDS: 8.11 Total: 31.85 kcal Atomic # 7 Polarization: -137.20 SS G_CDS: -8.44 Total: -145.63 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -1.21 Total: -34.85 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.83 Total: 42.98 kcal Total: -72.40 -0.20 -72.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089680921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.939 kcal (2) G-P(sol) polarization free energy of solvation -72.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds