Wall clock time and date at job start Sat Apr 11 2020 04:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32223 * 120.51094 * 2 1 4 4 C 1.31904 * 121.14039 * 179.97438 * 3 2 1 5 5 C 1.50704 * 118.89923 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47102 * 120.00104 * 5 4 3 7 7 C 1.53000 * 109.47088 * 239.99763 * 5 4 3 8 8 N 1.31756 * 122.19747 * 359.97438 * 4 3 2 9 9 C 1.32741 * 120.87320 * 359.77475 * 8 4 3 10 10 O 1.35275 * 120.61830 * 180.26649 * 9 8 4 11 11 C 1.39768 * 120.51025 * 179.97438 * 2 1 3 12 12 C 1.47541 * 120.97575 * 359.97438 * 11 2 1 13 13 O 1.21587 * 119.99712 * 90.00799 * 12 11 2 14 14 N 1.34776 * 120.00271 * 270.00208 * 12 11 2 15 15 C 1.46493 * 119.99927 * 180.27772 * 14 12 11 16 16 H 1.08999 * 109.47295 * 324.72813 * 15 14 12 17 17 C 1.53001 * 109.47362 * 84.72559 * 15 14 12 18 18 C 1.53005 * 109.47170 * 204.72606 * 15 14 12 19 19 N 1.46493 * 109.47090 * 54.99916 * 18 15 14 20 20 C 1.46503 * 119.99988 * 270.00167 * 19 18 15 21 21 C 1.36935 * 120.00318 * 90.00119 * 19 18 15 22 22 H 1.08002 * 119.99814 * 19.08183 * 21 19 18 23 23 C 1.38810 * 120.00689 * 199.08541 * 21 19 18 24 24 N 1.31624 * 119.99720 * 15.08836 * 23 21 19 25 25 Si 1.86796 * 120.00418 * 195.09086 * 23 21 19 26 26 H 1.48500 * 109.46904 * 84.99603 * 25 23 21 27 27 H 1.48502 * 109.47282 * 204.99904 * 25 23 21 28 28 H 1.48498 * 109.47155 * 325.00069 * 25 23 21 29 29 H 1.09000 * 109.47122 * 270.02807 * 1 2 3 30 30 H 1.09002 * 109.47041 * 30.01785 * 1 2 3 31 31 H 1.08992 * 109.47440 * 150.02175 * 1 2 3 32 32 H 1.08998 * 109.46730 * 359.97438 * 5 4 3 33 33 H 1.08999 * 109.47019 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46946 * 299.99971 * 6 5 4 35 35 H 1.09004 * 109.47197 * 59.99635 * 6 5 4 36 36 H 1.09004 * 109.46982 * 59.99870 * 7 5 4 37 37 H 1.08999 * 109.47155 * 179.97438 * 7 5 4 38 38 H 1.09004 * 109.47082 * 300.00285 * 7 5 4 39 39 H 0.96706 * 114.00135 * 270.21644 * 10 9 8 40 40 H 0.97003 * 119.99696 * 0.02562 * 14 12 11 41 41 H 1.09000 * 109.47442 * 179.97438 * 17 15 14 42 42 H 1.09005 * 109.47232 * 300.00410 * 17 15 14 43 43 H 1.09007 * 109.47013 * 59.99882 * 17 15 14 44 44 H 1.08991 * 109.47195 * 175.00144 * 18 15 14 45 45 H 1.09005 * 109.46610 * 295.00025 * 18 15 14 46 46 H 1.09005 * 109.47242 * 95.14860 * 20 19 18 47 47 H 1.09004 * 109.47147 * 215.14933 * 20 19 18 48 48 H 1.08996 * 109.47328 * 335.14647 * 20 19 18 49 49 H 0.97003 * 120.00104 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4972 1.1536 0.0005 5 6 4.2110 2.4809 -0.0001 6 6 5.0873 2.5893 1.2494 7 6 5.0883 2.5876 -1.2491 8 7 4.2115 0.0465 0.0015 9 6 3.6233 -1.1435 0.0066 10 8 4.3617 -2.2770 0.0130 11 6 2.2165 -1.2042 0.0005 12 6 1.5122 -2.5006 0.0017 13 8 1.2218 -3.0355 -1.0508 14 7 1.1909 -3.0920 1.1694 15 6 0.4970 -4.3821 1.1704 16 1 -0.1962 -4.4226 0.3303 17 6 1.5207 -5.5120 1.0417 18 6 -0.2784 -4.5432 2.4796 19 7 -1.1739 -3.3981 2.6607 20 6 -0.7041 -2.2059 3.3709 21 6 -2.4501 -3.4420 2.1663 22 1 -2.9033 -4.3921 1.9249 23 6 -3.1614 -2.2654 1.9751 24 7 -2.5333 -1.1086 1.9796 25 14 -5.0097 -2.3235 1.7117 26 1 -5.6965 -2.3576 3.0279 27 1 -5.4407 -1.1178 0.9595 28 1 -5.3614 -3.5414 0.9382 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5134 32 1 3.4779 3.2876 -0.0014 33 1 5.6039 3.5491 1.2487 34 1 4.4623 2.5133 2.1392 35 1 5.8203 1.7825 1.2502 36 1 4.4640 2.5103 -2.1393 37 1 5.6042 3.5478 -1.2497 38 1 5.8213 1.7808 -1.2482 39 1 4.5803 -2.6090 -0.8685 40 1 1.4224 -2.6650 2.0091 41 1 1.0044 -6.4720 1.0429 42 1 2.0731 -5.3973 0.1090 43 1 2.2140 -5.4716 1.8819 44 1 -0.8649 -5.4611 2.4439 45 1 0.4224 -4.5919 3.3132 46 1 -0.3409 -1.4732 2.6502 47 1 -1.5265 -1.7761 3.9429 48 1 0.1044 -2.4813 4.0480 49 1 -3.0302 -0.2864 1.8457 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569130708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:36 Heat of formation + Delta-G solvation = -16.191941 kcal Electronic energy + Delta-G solvation = -30981.431145 eV Core-core repulsion = 26944.682460 eV Total energy + Delta-G solvation = -4036.748686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.38711 -39.15548 -37.86543 -36.43165 -35.71098 -34.07592 -33.46703 -31.89207 -30.96665 -30.03071 -28.25219 -27.30774 -26.23329 -25.65492 -25.13605 -23.01681 -22.17735 -20.98454 -20.28422 -19.92991 -18.91538 -17.85707 -17.36980 -16.87533 -16.07203 -15.62925 -15.10860 -14.90997 -14.50324 -14.37989 -14.24955 -13.82730 -13.56119 -13.33407 -13.23898 -13.13229 -12.86487 -12.47959 -12.40096 -12.23334 -12.09607 -12.00762 -11.95241 -11.68810 -11.47380 -11.31808 -11.15866 -11.05250 -10.97404 -10.88848 -10.81526 -10.58565 -10.27327 -10.16663 -10.01085 -9.87364 -9.53618 -9.27517 -9.16213 -8.65729 -8.43424 -6.84436 -5.78161 -3.18996 0.66904 1.00732 2.89456 3.21412 3.37328 3.44375 3.44813 3.47698 3.75436 3.84216 4.30005 4.47821 4.75401 4.88944 4.97574 5.02161 5.13044 5.30177 5.32832 5.42236 5.49466 5.51056 5.65147 5.69512 5.70528 5.79461 5.81440 5.95125 6.06146 6.06914 6.08350 6.13242 6.20089 6.23008 6.26558 6.43629 6.48295 6.58367 6.78210 6.82255 6.94399 7.06767 7.25425 7.28226 7.58766 7.77507 7.97719 8.07813 8.31909 8.63068 9.18519 9.80945 10.27833 11.27564 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.003976 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.847412 B = 7040.687282 C = 8320.538640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.241 3.759 3 N -0.524 5.524 4 C 0.356 3.644 5 C -0.027 4.027 6 C -0.141 4.141 7 C -0.140 4.140 8 N -0.541 5.541 9 C 0.391 3.609 10 O -0.470 6.470 11 C -0.253 4.253 12 C 0.584 3.416 13 O -0.544 6.544 14 N -0.681 5.681 15 C 0.116 3.884 16 H 0.088 0.912 17 C -0.159 4.159 18 C 0.143 3.857 19 N -0.597 5.597 20 C 0.162 3.838 21 C -0.253 4.253 22 H 0.069 0.931 23 C 0.007 3.993 24 N -0.904 5.904 25 Si 0.902 3.098 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.124 0.876 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.409 0.591 40 H 0.396 0.604 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.061 0.939 45 H 0.042 0.958 46 H 0.029 0.971 47 H 0.047 0.953 48 H -0.007 1.007 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.694 3.489 -2.377 15.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.096 3.904 3 N -0.240 5.240 4 C 0.089 3.911 5 C -0.047 4.047 6 C -0.199 4.199 7 C -0.198 4.198 8 N -0.266 5.266 9 C 0.203 3.797 10 O -0.278 6.278 11 C -0.262 4.262 12 C 0.368 3.632 13 O -0.422 6.422 14 N -0.329 5.329 15 C 0.009 3.991 16 H 0.106 0.894 17 C -0.218 4.218 18 C 0.014 3.986 19 N -0.319 5.319 20 C 0.017 3.983 21 C -0.383 4.383 22 H 0.087 0.913 23 C -0.191 4.191 24 N -0.550 5.550 25 Si 0.733 3.267 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.142 0.858 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.269 0.731 40 H 0.230 0.770 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.060 0.940 46 H 0.047 0.953 47 H 0.065 0.935 48 H 0.012 0.988 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.803 4.069 -2.520 15.557 hybrid contribution -1.224 -0.684 -0.315 1.437 sum 13.579 3.385 -2.835 14.278 Atomic orbital electron populations 1.21034 0.84811 1.03968 1.06992 1.22194 0.98486 0.85481 0.84231 1.68208 1.09020 1.29815 1.16970 1.23050 0.86276 0.93466 0.88338 1.20019 0.97102 0.90250 0.97371 1.21798 0.99591 1.02544 0.95970 1.21794 0.99547 1.02560 0.95927 1.67683 1.42382 0.98049 1.18500 1.19314 0.85521 0.85659 0.89170 1.84619 1.72678 1.36102 1.34393 1.21866 0.94734 0.97496 1.12087 1.17369 0.78336 0.82914 0.84627 1.90769 1.55005 1.65013 1.31383 1.45768 1.57331 1.22372 1.07452 1.21961 0.93164 0.80726 1.03263 0.89439 1.22144 0.99547 0.98673 1.01399 1.21192 0.92202 0.92511 0.92673 1.43921 1.10542 1.13932 1.63506 1.20871 0.95651 0.88370 0.93416 1.19190 0.88649 0.92511 1.37908 0.91347 1.24827 0.98153 0.95680 1.00473 1.69996 1.33691 0.96969 1.54298 0.86308 0.85912 0.76922 0.77551 1.21701 1.21831 1.20777 0.85821 0.90316 0.89550 0.88233 0.91586 0.92566 0.91445 0.92719 0.91576 0.91482 0.73064 0.76966 0.92002 0.92933 0.93075 0.92083 0.93959 0.95279 0.93456 0.98845 0.93846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 9.85 36.00 0.35 -1.71 16 2 C 0.24 4.26 6.86 -81.85 -0.56 3.70 16 3 N -0.52 -8.64 10.21 -6.72 -0.07 -8.71 16 4 C 0.36 5.22 6.34 -157.13 -1.00 4.23 16 5 C -0.03 -0.30 3.25 -91.77 -0.30 -0.60 16 6 C -0.14 -1.37 9.08 37.16 0.34 -1.03 16 7 C -0.14 -1.30 9.08 37.16 0.34 -0.96 16 8 N -0.54 -8.11 9.79 -10.47 -0.10 -8.21 16 9 C 0.39 6.11 7.85 -16.19 -0.13 5.98 16 10 O -0.47 -6.30 13.10 -17.52 -0.23 -6.53 16 11 C -0.25 -4.40 5.67 -104.56 -0.59 -4.99 16 12 C 0.58 11.11 5.47 -12.47 -0.07 11.04 16 13 O -0.54 -11.83 16.77 5.29 0.09 -11.74 16 14 N -0.68 -12.31 4.42 -54.85 -0.24 -12.55 16 15 C 0.12 2.09 2.88 -67.93 -0.20 1.90 16 16 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 17 C -0.16 -2.33 9.48 37.16 0.35 -1.98 16 18 C 0.14 2.65 5.33 -4.04 -0.02 2.62 16 19 N -0.60 -13.54 2.78 -181.12 -0.50 -14.04 16 20 C 0.16 3.57 7.59 59.85 0.45 4.03 16 21 C -0.25 -6.47 9.69 -15.06 -0.15 -6.62 16 22 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 23 C 0.01 0.18 5.07 -17.43 -0.09 0.09 16 24 N -0.90 -23.46 10.04 55.49 0.56 -22.91 16 25 Si 0.90 21.12 29.58 -169.99 -5.03 16.09 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 H 0.12 2.55 6.79 -51.93 -0.35 2.19 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.09 1.81 7.18 -51.93 -0.37 1.44 16 32 H 0.10 1.04 8.09 -51.93 -0.42 0.62 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.70 8.00 -51.93 -0.42 0.28 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.66 8.00 -51.93 -0.42 0.24 16 39 H 0.41 3.72 9.06 45.56 0.41 4.14 16 40 H 0.40 6.97 7.17 -40.82 -0.29 6.68 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.06 1.10 8.03 -51.93 -0.42 0.69 16 45 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 46 H 0.03 0.67 6.22 -51.93 -0.32 0.35 16 47 H 0.05 1.16 7.13 -51.93 -0.37 0.79 16 48 H -0.01 -0.14 7.83 -51.93 -0.41 -0.54 16 49 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 LS Contribution 401.78 15.07 6.05 6.05 Total: -1.00 -29.73 401.78 -7.84 -37.57 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -7.10 Total: 9.29 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: -1.26 Total: 15.69 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: -0.36 Total: -66.42 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.14 Total: -18.28 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.73 -7.84 -37.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569130708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.376 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds