Wall clock time and date at job start Sat Apr 11 2020 04:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35460 * 125.56635 * 2 1 4 4 C 1.39830 * 107.86702 * 179.73562 * 3 2 1 5 5 C 1.37877 * 107.08528 * 359.97438 * 4 3 2 6 6 C 1.46680 * 126.23097 * 179.97438 * 5 4 3 7 7 O 1.21701 * 119.99711 * 175.01767 * 6 5 4 8 8 N 1.34774 * 120.00372 * 355.02365 * 6 5 4 9 9 C 1.46497 * 120.00354 * 185.08257 * 8 6 5 10 10 C 1.52994 * 109.47298 * 179.97438 * 9 8 6 11 11 H 1.08997 * 109.47350 * 54.99716 * 10 9 8 12 12 C 1.52999 * 109.47217 * 294.99737 * 10 9 8 13 13 C 1.53006 * 109.46983 * 175.00100 * 10 9 8 14 14 N 1.46906 * 109.46978 * 184.99975 * 13 10 9 15 15 C 1.46894 * 110.99819 * 179.97438 * 14 13 10 16 16 C 1.50704 * 109.47032 * 180.02562 * 15 14 13 17 17 O 1.21288 * 119.99927 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99828 * 179.97438 * 16 15 14 19 19 C 1.37102 * 119.99876 * 179.97438 * 18 16 15 20 20 H 1.07998 * 119.99639 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00132 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99911 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99862 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47065 * 89.99909 * 23 21 19 25 25 H 1.48506 * 109.46729 * 209.99733 * 23 21 19 26 26 H 1.48498 * 109.47168 * 329.99489 * 23 21 19 27 27 N 1.35539 * 125.56544 * 179.69064 * 2 1 3 28 28 C 1.46500 * 125.67253 * 0.24111 * 27 2 1 29 29 H 1.09006 * 109.46757 * 90.02550 * 1 2 3 30 30 H 1.08993 * 109.47183 * 210.02433 * 1 2 3 31 31 H 1.08997 * 109.47275 * 330.03065 * 1 2 3 32 32 H 1.07999 * 126.06641 * 359.70970 * 3 2 1 33 33 H 1.07997 * 126.46043 * 180.02562 * 4 3 2 34 34 H 0.97002 * 119.99763 * 5.07501 * 8 6 5 35 35 H 1.08997 * 109.46938 * 299.99913 * 9 8 6 36 36 H 1.09003 * 109.47177 * 59.99201 * 9 8 6 37 37 H 1.09005 * 109.47267 * 300.00201 * 12 10 9 38 38 H 1.09004 * 109.47170 * 60.00248 * 12 10 9 39 39 H 1.09001 * 109.47396 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.47100 * 304.99649 * 13 10 9 41 41 H 1.08992 * 109.47244 * 64.99690 * 13 10 9 42 42 H 1.00904 * 110.99875 * 56.04575 * 14 13 10 43 43 H 1.09002 * 109.47034 * 299.99478 * 15 14 13 44 44 H 1.08997 * 109.47315 * 60.00101 * 15 14 13 45 45 H 0.97000 * 120.00664 * 359.97438 * 18 16 15 46 46 H 0.97000 * 119.99747 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.46888 * 95.48355 * 28 27 2 48 48 H 1.09000 * 109.46592 * 215.47412 * 28 27 2 49 49 H 1.08998 * 109.47487 * 335.48106 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1019 0.0000 4 6 3.6270 0.6768 0.0061 5 6 3.6122 -0.7019 0.0104 6 6 4.7860 -1.5815 0.0168 7 8 4.6430 -2.7863 0.1117 8 7 6.0229 -1.0554 -0.0821 9 6 7.1877 -1.9375 -0.1879 10 6 8.4596 -1.0929 -0.2875 11 1 8.5083 -0.4082 0.5591 12 6 8.4390 -0.2917 -1.5908 13 6 9.6837 -2.0108 -0.2724 14 7 10.9061 -1.1963 -0.2473 15 6 12.1044 -2.0458 -0.2316 16 6 13.3356 -1.1772 -0.2054 17 8 13.2256 0.0307 -0.2008 18 7 14.5589 -1.7426 -0.1872 19 6 15.6790 -0.9523 -0.1639 20 1 15.5810 0.1232 -0.1598 21 6 16.9402 -1.5352 -0.1456 22 7 17.0593 -2.8438 -0.1501 23 14 18.4663 -0.4584 -0.1131 24 1 18.8466 -0.1812 1.2953 25 1 19.5816 -1.1600 -0.7982 26 1 18.1839 0.8217 -0.8108 27 7 2.2953 -1.1025 0.0060 28 6 1.8241 -2.4897 0.0084 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3634 0.8902 0.5133 32 1 1.9546 2.1269 -0.0044 33 1 4.5024 1.3091 0.0081 34 1 6.1418 -0.0927 -0.0834 35 1 7.2424 -2.5745 0.6949 36 1 7.0936 -2.5585 -1.0787 37 1 8.3902 -0.9765 -2.4375 38 1 7.5669 0.3621 -1.6016 39 1 9.3453 0.3096 -1.6620 40 1 9.6514 -2.6449 0.6135 41 1 9.6811 -2.6347 -1.1661 42 1 10.9022 -0.5625 0.5378 43 1 12.0886 -2.6799 0.6549 44 1 12.1188 -2.6703 -1.1249 45 1 14.6469 -2.7086 -0.1905 46 1 17.9398 -3.2507 -0.1369 47 1 1.8037 -2.8683 -1.0135 48 1 2.4977 -3.1010 0.6090 49 1 0.8205 -2.5318 0.4316 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715224921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:44:59 Heat of formation + Delta-G solvation = -36.178100 kcal Electronic energy + Delta-G solvation = -27575.372783 eV Core-core repulsion = 23537.757432 eV Total energy + Delta-G solvation = -4037.615351 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.80660 -39.51244 -38.34857 -37.15473 -34.98116 -33.89641 -33.31654 -32.46722 -31.84277 -31.17960 -27.91003 -27.36419 -26.85071 -26.03960 -24.70316 -23.16683 -22.17410 -20.74930 -20.51439 -19.51229 -19.14183 -18.04970 -17.81003 -16.47633 -16.20302 -15.94687 -15.80298 -15.51931 -15.17678 -14.70261 -14.67544 -14.31954 -14.14641 -13.84706 -13.66154 -13.63006 -13.50732 -13.37997 -13.21747 -13.11788 -12.61310 -12.42637 -12.38859 -12.28724 -12.18501 -11.92036 -11.66968 -11.51117 -11.14521 -11.05530 -10.98053 -10.86832 -10.38796 -10.25103 -10.20660 -9.50188 -9.37156 -9.09565 -8.45471 -8.38941 -8.04692 -7.94989 -6.40990 -3.81839 1.13876 2.25396 2.34373 3.06359 3.12356 3.18441 3.27082 3.33152 3.91962 4.09602 4.30835 4.36037 4.41420 4.46620 4.67499 4.71589 4.82466 4.84869 4.95389 5.03419 5.09207 5.14590 5.17916 5.23588 5.26790 5.34288 5.39575 5.47386 5.57547 5.69164 5.72851 5.76459 5.81738 5.88000 5.91578 5.99587 6.07078 6.21469 6.27858 6.41295 6.45702 6.64770 6.83808 7.20671 7.22344 7.55892 7.65896 7.91899 8.07173 8.62092 9.18649 9.55286 10.06665 10.76772 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.040135 B = 0.001442 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.482339 B =19413.650352 C =19948.559963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.040 3.960 3 C -0.206 4.206 4 C -0.137 4.137 5 C -0.055 4.055 6 C 0.589 3.411 7 O -0.553 6.553 8 N -0.714 5.714 9 C 0.127 3.873 10 C -0.100 4.100 11 H 0.078 0.922 12 C -0.141 4.141 13 C 0.066 3.934 14 N -0.666 5.666 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 N -0.407 5.407 28 C 0.066 3.934 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.404 0.596 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.029 0.971 41 H 0.074 0.926 42 H 0.349 0.651 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.076 0.924 48 H 0.101 0.899 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.396 1.538 0.400 32.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.229 4.229 4 C -0.163 4.163 5 C -0.168 4.168 6 C 0.377 3.623 7 O -0.432 6.432 8 N -0.366 5.366 9 C 0.004 3.996 10 C -0.119 4.119 11 H 0.096 0.904 12 C -0.198 4.198 13 C -0.064 4.064 14 N -0.298 5.298 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 N -0.081 5.081 28 C -0.075 4.075 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.239 0.761 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.047 0.953 41 H 0.093 0.907 42 H 0.168 0.832 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.094 0.906 48 H 0.120 0.880 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -32.445 1.052 -0.234 32.463 hybrid contribution 0.967 -0.112 0.905 1.329 sum -31.478 0.940 0.671 31.499 Atomic orbital electron populations 1.20400 0.87742 1.03468 1.02943 1.20591 0.93815 0.85853 1.07406 1.20624 0.92437 0.97810 1.12070 1.21349 0.97983 0.91912 1.05083 1.19984 0.84295 0.93551 1.18939 1.16963 0.82340 0.86752 0.76279 1.90786 1.86400 1.14993 1.51056 1.45625 1.05351 1.10880 1.74696 1.21421 0.83306 0.92477 1.02429 1.21346 0.92767 0.97599 1.00202 0.90394 1.21769 1.02285 0.99954 0.95809 1.21892 0.89077 0.94617 1.00820 1.60045 0.99686 1.19132 1.50924 1.21666 0.90266 0.95031 1.01233 1.19812 0.84222 0.88899 0.84427 1.90517 1.86307 1.14527 1.55430 1.41866 1.04376 1.09466 1.64351 1.19708 0.83163 0.92495 1.47576 0.87920 1.25258 0.99265 0.96072 0.97322 1.69613 1.25061 1.09035 1.50612 0.85858 0.80406 0.79657 0.78369 1.20439 1.20926 1.19398 1.43748 1.04625 1.06619 1.53107 1.22240 1.01406 0.79654 1.04241 0.90668 0.91613 0.89770 0.83978 0.83779 0.76060 0.91243 0.91095 0.92781 0.93611 0.90346 0.95252 0.90720 0.83222 0.93887 0.89589 0.77459 0.91885 0.90577 0.88028 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 10.07 36.00 0.36 -0.01 16 2 C 0.04 0.31 6.87 -81.95 -0.56 -0.25 16 3 C -0.21 -1.65 10.71 -39.98 -0.43 -2.07 16 4 C -0.14 -1.18 10.36 -39.12 -0.41 -1.59 16 5 C -0.05 -0.56 6.89 -81.98 -0.56 -1.13 16 6 C 0.59 6.72 7.77 -12.85 -0.10 6.62 16 7 O -0.55 -7.79 14.78 5.19 0.08 -7.71 16 8 N -0.71 -6.59 5.27 -61.62 -0.32 -6.91 16 9 C 0.13 1.22 5.07 -4.05 -0.02 1.20 16 10 C -0.10 -0.96 2.57 -90.62 -0.23 -1.20 16 11 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 12 C -0.14 -1.42 8.95 37.16 0.33 -1.09 16 13 C 0.07 0.77 5.07 -3.82 -0.02 0.75 16 14 N -0.67 -10.25 5.58 -115.06 -0.64 -10.90 16 15 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 16 C 0.44 10.37 7.82 -10.98 -0.09 10.28 16 17 O -0.58 -15.74 15.78 5.55 0.09 -15.65 16 18 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 19 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 23 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 N -0.41 -3.76 3.16 -115.62 -0.37 -4.13 16 28 C 0.07 0.47 10.33 59.85 0.62 1.09 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.22 6.91 -51.93 -0.36 -0.14 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.14 0.92 7.45 -52.49 -0.39 0.53 16 34 H 0.40 2.93 6.55 -40.82 -0.27 2.66 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.04 0.38 7.18 -51.93 -0.37 0.01 16 39 H 0.08 0.97 7.75 -51.93 -0.40 0.57 16 40 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.35 5.54 8.43 -39.29 -0.33 5.21 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.10 0.90 6.53 -51.93 -0.34 0.56 16 49 H 0.08 0.37 6.80 -51.93 -0.35 0.01 16 LS Contribution 406.20 15.07 6.12 6.12 Total: -1.00 -34.17 406.20 -8.50 -42.67 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -7.72 Total: 13.27 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -1.38 Total: 5.42 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -0.67 Total: -60.17 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.16 Total: -23.37 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.17 -8.50 -42.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715224921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.495 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds