Wall clock time and date at job start Sat Apr 11 2020 04:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35448 * 125.56369 * 2 1 4 4 C 1.39836 * 107.86772 * 180.02562 * 3 2 1 5 5 C 1.37873 * 107.08315 * 0.02562 * 4 3 2 6 6 C 1.46677 * 126.23462 * 180.02562 * 5 4 3 7 7 O 1.21686 * 120.00147 * 174.87014 * 6 5 4 8 8 N 1.34775 * 119.99854 * 354.87052 * 6 5 4 9 9 C 1.46500 * 120.00232 * 175.45920 * 8 6 5 10 10 C 1.52993 * 109.47207 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.47646 * 304.99870 * 10 9 8 12 12 C 1.53004 * 109.47206 * 65.00114 * 10 9 8 13 13 C 1.53008 * 109.47206 * 184.99932 * 10 9 8 14 14 N 1.46902 * 109.47050 * 174.99810 * 13 10 9 15 15 C 1.46901 * 110.99499 * 179.97438 * 14 13 10 16 16 C 1.50701 * 109.46799 * 180.02562 * 15 14 13 17 17 O 1.21289 * 120.00311 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99881 * 180.02562 * 16 15 14 19 19 C 1.37096 * 120.00134 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99861 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00253 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00088 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00013 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46987 * 89.99717 * 23 21 19 25 25 H 1.48496 * 109.47075 * 210.00224 * 23 21 19 26 26 H 1.48504 * 109.46721 * 330.00117 * 23 21 19 27 27 N 1.35532 * 125.56279 * 180.34746 * 2 1 3 28 28 C 1.46497 * 125.68366 * 0.02562 * 27 2 1 29 29 H 1.09003 * 109.46579 * 89.97720 * 1 2 3 30 30 H 1.09000 * 109.46689 * 209.97672 * 1 2 3 31 31 H 1.08995 * 109.47065 * 329.98059 * 1 2 3 32 32 H 1.07998 * 126.06755 * 0.06875 * 3 2 1 33 33 H 1.08001 * 126.45846 * 180.02562 * 4 3 2 34 34 H 0.97004 * 120.00383 * 355.46098 * 8 6 5 35 35 H 1.09001 * 109.47109 * 60.00117 * 9 8 6 36 36 H 1.08999 * 109.46757 * 300.00323 * 9 8 6 37 37 H 1.09000 * 109.47025 * 179.97438 * 12 10 9 38 38 H 1.08995 * 109.47016 * 299.99816 * 12 10 9 39 39 H 1.08999 * 109.47126 * 60.00138 * 12 10 9 40 40 H 1.09000 * 109.46387 * 55.00214 * 13 10 9 41 41 H 1.08997 * 109.47018 * 295.00538 * 13 10 9 42 42 H 1.00904 * 110.99656 * 56.05353 * 14 13 10 43 43 H 1.09000 * 109.47401 * 300.00198 * 15 14 13 44 44 H 1.09003 * 109.47197 * 60.00303 * 15 14 13 45 45 H 0.97000 * 120.00031 * 0.02562 * 18 16 15 46 46 H 0.96999 * 120.00327 * 179.97438 * 22 21 19 47 47 H 1.08994 * 109.47203 * 266.86349 * 28 27 2 48 48 H 1.09004 * 109.46569 * 26.85860 * 28 27 2 49 49 H 1.08998 * 109.47237 * 146.85912 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6768 -0.0006 5 6 3.6123 -0.7019 -0.0015 6 6 4.7860 -1.5815 -0.0019 7 8 4.6435 -2.7864 0.0915 8 7 6.0224 -1.0552 -0.1056 9 6 7.1986 -1.9229 -0.0061 10 6 8.4674 -1.0814 -0.1568 11 1 8.4210 -0.5175 -1.0885 12 6 8.5791 -0.1115 1.0212 13 6 9.6900 -2.0012 -0.1779 14 7 10.8965 -1.2059 -0.4422 15 6 12.0930 -2.0579 -0.4691 16 6 13.3080 -1.2090 -0.7416 17 8 13.1890 -0.0121 -0.8975 18 7 14.5269 -1.7798 -0.8119 19 6 15.6323 -1.0076 -1.0593 20 1 15.5263 0.0582 -1.1982 21 6 16.8888 -1.5962 -1.1324 22 7 17.9483 -0.8560 -1.3700 23 14 17.0721 -3.4397 -0.8929 24 1 16.9488 -4.1240 -2.2051 25 1 18.4039 -3.7325 -0.3050 26 1 16.0090 -3.9280 0.0218 27 7 2.2953 -1.1025 -0.0067 28 6 1.8243 -2.4897 -0.0156 29 1 -0.3632 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5141 32 1 1.9545 2.1268 0.0010 33 1 4.5025 1.3092 -0.0004 34 1 6.1336 -0.1019 -0.2461 35 1 7.1646 -2.6730 -0.7962 36 1 7.2037 -2.4180 0.9650 37 1 9.4833 0.4877 0.9140 38 1 7.7082 0.5437 1.0362 39 1 8.6257 -0.6753 1.9529 40 1 9.5686 -2.7488 -0.9617 41 1 9.7869 -2.4988 0.7870 42 1 10.9962 -0.4643 0.2346 43 1 12.2064 -2.5555 0.4940 44 1 11.9886 -2.8063 -1.2547 45 1 14.6220 -2.7371 -0.6876 46 1 18.8255 -1.2668 -1.4206 47 1 1.7604 -2.8583 1.0081 48 1 0.8395 -2.5359 -0.4806 49 1 2.5225 -3.1068 -0.5811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715224924.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:01 Heat of formation + Delta-G solvation = -29.007576 kcal Electronic energy + Delta-G solvation = -27634.971961 eV Core-core repulsion = 23597.667547 eV Total energy + Delta-G solvation = -4037.304413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.82612 -39.55616 -38.54678 -37.29280 -35.05339 -33.95234 -33.34364 -32.50430 -31.88804 -31.61412 -28.00131 -27.52910 -26.86998 -26.22730 -24.67444 -23.13184 -22.19902 -20.72432 -20.47370 -19.52992 -19.31168 -18.38824 -17.97171 -16.64830 -16.24551 -16.04359 -15.73381 -15.60335 -15.33316 -14.90245 -14.69002 -14.32205 -14.25765 -13.83383 -13.65295 -13.62535 -13.48667 -13.33959 -13.21340 -13.05293 -12.83064 -12.73234 -12.41623 -12.36634 -12.27389 -12.21831 -12.00336 -11.74450 -11.25415 -11.18328 -11.02833 -10.95386 -10.59264 -10.28619 -9.97345 -9.57098 -9.40679 -9.11430 -8.59393 -8.41011 -8.19605 -8.14331 -6.30916 -3.82358 1.11679 2.23637 2.32118 3.02768 3.03679 3.07422 3.09379 3.15434 3.74331 4.07620 4.11455 4.33502 4.39693 4.44427 4.65637 4.67929 4.70869 4.79649 4.84257 4.91783 5.01811 5.05308 5.13757 5.20730 5.22076 5.31436 5.36052 5.37330 5.48611 5.52996 5.63671 5.69350 5.71226 5.78739 5.80721 5.81405 5.92844 6.02259 6.09050 6.17481 6.43542 6.62811 6.82002 7.07875 7.19216 7.56576 7.58841 7.88995 8.14746 8.60028 8.95183 9.42725 9.82946 10.82209 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.036662 B = 0.001500 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.551124 B =18667.244407 C =19259.652203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.041 3.959 3 C -0.205 4.205 4 C -0.137 4.137 5 C -0.055 4.055 6 C 0.589 3.411 7 O -0.552 6.552 8 N -0.714 5.714 9 C 0.128 3.872 10 C -0.102 4.102 11 H 0.091 0.909 12 C -0.153 4.153 13 C 0.066 3.934 14 N -0.668 5.668 15 C 0.047 3.953 16 C 0.450 3.550 17 O -0.565 6.565 18 N -0.591 5.591 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 N -0.408 5.408 28 C 0.068 3.932 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.404 0.596 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.031 0.969 42 H 0.351 0.649 43 H 0.045 0.955 44 H 0.088 0.912 45 H 0.371 0.629 46 H 0.273 0.727 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.705 -2.744 4.866 35.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.229 4.229 4 C -0.163 4.163 5 C -0.168 4.168 6 C 0.377 3.623 7 O -0.432 6.432 8 N -0.366 5.366 9 C 0.005 3.995 10 C -0.121 4.121 11 H 0.109 0.891 12 C -0.211 4.211 13 C -0.064 4.064 14 N -0.302 5.302 15 C -0.085 4.085 16 C 0.235 3.765 17 O -0.447 6.447 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 N -0.082 5.082 28 C -0.073 4.073 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.240 0.760 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.171 0.829 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -34.791 -3.184 4.128 35.180 hybrid contribution 0.604 -1.254 1.063 1.751 sum -34.187 -4.438 5.191 34.863 Atomic orbital electron populations 1.20397 0.87724 1.03533 1.02928 1.20591 0.93822 0.85831 1.07375 1.20629 0.92441 0.97826 1.12008 1.21353 0.97990 0.91900 1.05073 1.19988 0.84293 0.93557 1.18958 1.16957 0.82324 0.86728 0.76318 1.90789 1.86375 1.14843 1.51207 1.45627 1.04896 1.12233 1.73836 1.21397 0.82943 0.92761 1.02435 1.21372 0.92897 0.97072 1.00796 0.89084 1.21913 1.02476 0.99243 0.97451 1.21880 0.89432 0.95295 0.99760 1.60091 1.00516 1.12754 1.56791 1.21708 0.90329 0.95732 1.00767 1.19712 0.83673 0.88842 0.84225 1.90560 1.85367 1.15065 1.53699 1.42207 1.06785 1.08974 1.65040 1.19437 0.83199 0.95038 1.45760 0.86277 1.25033 0.95151 0.98343 0.97580 1.69618 0.98779 1.35577 1.48159 0.86670 0.78520 0.85273 0.78907 1.19589 1.20193 1.19537 1.43754 1.04629 1.06614 1.53155 1.22203 1.01374 0.79627 1.04102 0.90688 0.91606 0.89729 0.83961 0.83768 0.76033 0.91012 0.91276 0.91313 0.92594 0.92632 0.90714 0.95120 0.82863 0.93743 0.89416 0.79679 0.91616 0.90546 0.89984 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.36 9.82 36.01 0.35 -0.01 16 2 C 0.04 0.31 6.87 -81.95 -0.56 -0.25 16 3 C -0.21 -1.61 10.71 -39.98 -0.43 -2.03 16 4 C -0.14 -1.15 10.35 -39.12 -0.40 -1.56 16 5 C -0.05 -0.55 6.89 -81.98 -0.56 -1.12 16 6 C 0.59 6.52 7.77 -12.85 -0.10 6.42 16 7 O -0.55 -7.60 14.82 5.20 0.08 -7.52 16 8 N -0.71 -6.30 5.26 -61.62 -0.32 -6.63 16 9 C 0.13 1.16 5.07 -4.05 -0.02 1.14 16 10 C -0.10 -0.93 2.63 -90.62 -0.24 -1.17 16 11 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 12 C -0.15 -1.33 8.84 37.16 0.33 -1.00 16 13 C 0.07 0.73 5.14 -3.82 -0.02 0.71 16 14 N -0.67 -9.94 6.13 -115.05 -0.70 -10.64 16 15 C 0.05 0.78 6.17 -4.97 -0.03 0.74 16 16 C 0.45 10.18 7.82 -10.98 -0.09 10.09 16 17 O -0.57 -15.11 15.78 5.55 0.09 -15.02 16 18 N -0.59 -14.07 5.09 -10.96 -0.06 -14.13 16 19 C -0.31 -8.66 10.16 -14.93 -0.15 -8.82 16 20 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.76 13.96 55.50 0.77 -24.99 16 23 Si 0.88 19.37 27.74 -169.99 -4.71 14.66 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 27 N -0.41 -3.68 3.16 -115.62 -0.37 -4.04 16 28 C 0.07 0.48 10.08 59.85 0.60 1.08 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.22 7.59 -51.93 -0.39 -0.17 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.14 0.89 7.48 -52.49 -0.39 0.49 16 34 H 0.40 2.78 6.59 -40.82 -0.27 2.51 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.69 6.68 -51.93 -0.35 0.34 16 38 H 0.06 0.40 7.18 -51.93 -0.37 0.03 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.35 5.38 6.68 -39.29 -0.26 5.12 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 46 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.35 7.44 -51.93 -0.39 -0.04 16 49 H 0.10 0.85 6.64 -51.93 -0.34 0.51 16 LS Contribution 401.83 15.07 6.06 6.06 Total: -1.00 -35.67 401.83 -8.22 -43.89 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -7.63 Total: 13.10 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -1.42 Total: 5.28 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.68 Total: -60.43 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.16 Total: -22.55 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.71 Total: 14.66 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.67 -8.22 -43.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715224924.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.880 kcal (2) G-P(sol) polarization free energy of solvation -35.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds