Wall clock time and date at job start Sat Apr 11 2020 04:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30182 * 126.80780 * 2 1 4 4 O 1.20917 * 111.60384 * 180.25133 * 3 2 1 5 5 C 1.34041 * 111.57032 * 359.75018 * 4 3 2 6 6 C 1.50697 * 126.77553 * 180.02562 * 5 4 3 7 7 C 1.35442 * 106.44668 * 359.97438 * 5 4 3 8 8 C 1.50699 * 128.01081 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47285 * 89.99912 * 8 7 5 10 10 N 1.46497 * 109.47228 * 180.02562 * 9 8 7 11 11 C 1.34778 * 120.00173 * 180.02562 * 10 9 8 12 12 O 1.21587 * 119.99775 * 5.08702 * 11 10 9 13 13 N 1.34769 * 120.00483 * 185.08230 * 11 10 9 14 14 C 1.47077 * 120.88700 * 175.00680 * 13 11 10 15 15 C 1.53242 * 108.52266 * 231.16577 * 14 13 11 16 16 N 1.46898 * 109.33811 * 306.16450 * 15 14 13 17 17 C 1.46905 * 110.99962 * 187.25127 * 16 15 14 18 18 C 1.50699 * 109.46823 * 170.00059 * 17 16 15 19 19 H 1.08000 * 120.00384 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99666 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00216 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00007 * 359.72468 * 20 18 17 23 23 H 1.48493 * 109.47244 * 270.27691 * 22 20 18 24 24 H 1.48499 * 109.47212 * 30.27822 * 22 20 18 25 25 H 1.48498 * 109.47171 * 150.27595 * 22 20 18 26 26 C 1.46897 * 111.26900 * 63.10761 * 16 15 14 27 27 C 1.47078 * 120.88089 * 354.98254 * 13 11 10 28 28 H 1.09002 * 109.47325 * 270.16910 * 1 2 3 29 29 H 1.09007 * 109.46624 * 30.16541 * 1 2 3 30 30 H 1.08995 * 109.47120 * 150.16259 * 1 2 3 31 31 H 1.09002 * 109.46839 * 269.99506 * 6 5 4 32 32 H 1.08993 * 109.47583 * 29.99466 * 6 5 4 33 33 H 1.09000 * 109.47289 * 149.99479 * 6 5 4 34 34 H 1.09001 * 109.46867 * 330.00293 * 8 7 5 35 35 H 1.09001 * 109.47825 * 210.00520 * 8 7 5 36 36 H 1.09001 * 109.46857 * 60.00374 * 9 8 7 37 37 H 1.08991 * 109.47556 * 300.00650 * 9 8 7 38 38 H 0.97000 * 120.00112 * 0.02562 * 10 9 8 39 39 H 1.08999 * 109.63280 * 111.45350 * 14 13 11 40 40 H 1.09008 * 109.78829 * 350.96590 * 14 13 11 41 41 H 1.09000 * 109.49575 * 186.20628 * 15 14 13 42 42 H 1.09002 * 109.49567 * 66.12640 * 15 14 13 43 43 H 1.08997 * 109.46461 * 50.00219 * 17 16 15 44 44 H 1.09001 * 109.47134 * 290.00558 * 17 16 15 45 45 H 0.96989 * 120.00134 * 179.73023 * 21 20 18 46 46 H 1.09002 * 109.49615 * 56.84731 * 26 16 15 47 47 H 1.08992 * 109.49623 * 176.93637 * 26 16 15 48 48 H 1.09000 * 109.63155 * 248.54707 * 27 13 11 49 49 H 1.09003 * 109.62875 * 9.12800 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7252 -0.0049 5 6 3.6024 -0.6069 -0.0035 6 6 4.9021 -1.3697 -0.0078 7 6 2.3540 -1.1321 0.0037 8 6 1.9589 -2.5864 0.0076 9 6 1.8329 -3.0768 1.4513 10 7 1.4494 -4.4907 1.4550 11 6 1.2785 -5.1396 2.6239 12 8 1.3516 -4.5304 3.6736 13 7 1.0266 -6.4635 2.6293 14 6 0.9450 -7.2114 3.8930 15 6 1.8604 -8.4363 3.7938 16 7 1.5131 -9.2071 2.5925 17 6 2.2492 -10.4778 2.5512 18 6 1.6943 -11.3441 1.4500 19 1 0.8771 -10.9864 0.8413 20 6 2.2302 -12.5934 1.2195 21 7 1.7464 -13.3493 0.2581 22 14 3.6489 -13.2090 2.2672 23 1 4.9354 -12.8087 1.6430 24 1 3.5533 -12.6183 3.6263 25 1 3.5858 -14.6894 2.3654 26 6 1.7457 -8.4243 1.3714 27 6 0.8256 -7.1988 1.3714 28 1 -0.3634 0.0030 1.0277 29 1 -0.3633 0.8886 -0.5164 30 1 -0.3633 -0.8914 -0.5113 31 1 5.2110 -1.5553 -1.0366 32 1 5.6681 -0.7854 0.5018 33 1 4.7672 -2.3204 0.5081 34 1 2.7199 -3.1709 -0.5095 35 1 1.0022 -2.7045 -0.5012 36 1 1.0719 -2.4923 1.9684 37 1 2.7895 -2.9588 1.9600 38 1 1.3185 -4.9600 0.6162 39 1 -0.0822 -7.5347 4.0615 40 1 1.2695 -6.5777 4.7185 41 1 1.7291 -9.0611 4.6773 42 1 2.8985 -8.1104 3.7294 43 1 2.1413 -10.9912 3.5066 44 1 3.3043 -10.2805 2.3618 45 1 2.1259 -14.2265 0.0934 46 1 2.7854 -8.0983 1.3407 47 1 1.5311 -9.0401 0.4981 48 1 -0.2132 -7.5208 1.2975 49 1 1.0732 -6.5550 0.5274 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601569708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:42 Heat of formation + Delta-G solvation = 41.933091 kcal Electronic energy + Delta-G solvation = -28943.258033 eV Core-core repulsion = 24909.029838 eV Total energy + Delta-G solvation = -4034.228195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.26274 -40.31485 -37.92881 -36.64303 -34.75834 -34.48627 -33.88914 -32.44078 -31.13905 -30.30532 -29.02500 -28.69836 -27.72859 -25.75995 -24.18350 -23.32206 -21.82791 -21.70143 -20.72522 -20.49169 -19.35218 -18.11381 -17.91292 -17.21928 -16.88387 -16.33018 -15.93174 -15.06713 -14.96900 -14.71119 -14.60373 -14.39899 -14.17976 -13.87063 -13.82786 -13.73524 -13.61398 -13.49223 -13.29085 -12.95134 -12.92343 -12.59653 -12.52711 -12.43127 -12.16435 -11.87148 -11.57635 -11.24774 -11.21927 -11.16177 -10.83613 -10.68049 -10.37061 -10.19157 -10.02341 -9.88111 -9.49299 -9.38913 -9.24508 -8.65797 -8.43319 -7.51592 -6.13413 -4.11475 1.09326 1.81264 2.60551 2.79385 3.22399 3.22750 3.31043 3.32586 3.76115 3.89612 4.07133 4.33018 4.34909 4.53857 4.62492 4.63533 4.83142 4.94341 4.98805 5.07663 5.14645 5.15012 5.18850 5.19113 5.30022 5.30448 5.34049 5.37796 5.53102 5.54600 5.61928 5.65652 5.68421 5.74065 5.83159 5.97870 6.14783 6.31514 6.34933 6.35989 6.52886 6.75159 6.86837 6.96397 7.49479 7.74877 7.90466 7.94316 7.94736 8.55190 8.59751 8.93417 9.48171 10.99366 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018979 B = 0.002066 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.977336 B =13548.635680 C =13986.947871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.027 3.973 3 N -0.368 5.368 4 O 0.097 5.903 5 C -0.022 4.022 6 C -0.078 4.078 7 C -0.199 4.199 8 C -0.052 4.052 9 C 0.146 3.854 10 N -0.751 5.751 11 C 0.708 3.292 12 O -0.597 6.597 13 N -0.625 5.625 14 C 0.137 3.863 15 C 0.037 3.963 16 N -0.525 5.525 17 C 0.162 3.838 18 C -0.512 4.512 19 H 0.081 0.919 20 C 0.069 3.931 21 N -0.898 5.898 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.267 1.267 25 H -0.285 1.285 26 C 0.050 3.950 27 C 0.116 3.884 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.397 0.603 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.027 0.973 43 H 0.031 0.969 44 H -0.016 1.016 45 H 0.264 0.736 46 H 0.025 0.975 47 H 0.102 0.898 48 H 0.078 0.922 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.807 23.731 -2.142 23.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.132 4.132 3 N -0.074 5.074 4 O 0.032 5.968 5 C -0.086 4.086 6 C -0.135 4.135 7 C -0.203 4.203 8 C -0.090 4.090 9 C 0.021 3.979 10 N -0.410 5.410 11 C 0.410 3.590 12 O -0.476 6.476 13 N -0.362 5.362 14 C 0.014 3.986 15 C -0.092 4.092 16 N -0.250 5.250 17 C 0.036 3.964 18 C -0.550 4.550 19 H 0.099 0.901 20 C -0.133 4.133 21 N -0.537 5.537 22 Si 0.703 3.297 23 H -0.204 1.204 24 H -0.192 1.192 25 H -0.211 1.211 26 C -0.080 4.080 27 C -0.008 4.008 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.234 0.766 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.045 0.955 43 H 0.049 0.951 44 H 0.002 0.998 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.121 0.879 48 H 0.096 0.904 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.190 25.210 -1.421 25.278 hybrid contribution 1.525 -1.351 -0.045 2.037 sum 2.715 23.860 -1.466 24.058 Atomic orbital electron populations 1.20196 0.85867 1.03796 1.03656 1.23475 0.98987 0.88407 1.02360 1.73857 0.89264 1.23933 1.20350 1.84809 1.21664 1.22485 1.67819 1.24317 0.98266 0.83839 1.02167 1.20399 0.90023 0.98802 1.04269 1.20650 0.91695 0.96871 1.11105 1.20042 1.03166 0.88894 0.96938 1.21053 1.00940 0.80405 0.95504 1.45226 1.76230 1.11846 1.07665 1.15782 0.77821 0.81503 0.83895 1.90892 1.59580 1.66390 1.30766 1.47392 1.74488 1.05851 1.08516 1.21596 1.00382 0.91647 0.84987 1.22496 0.96537 0.94626 0.95554 1.61897 1.58429 1.04583 1.00080 1.20191 0.91117 0.86611 0.98449 1.20999 1.18948 0.99675 1.15363 0.90060 1.24897 0.96746 0.96569 0.95057 1.69881 1.42060 1.10780 1.30999 0.86863 0.83076 0.78269 0.81524 1.20382 1.19198 1.21107 1.22366 0.96004 0.93558 0.96025 1.21869 1.01262 0.93086 0.84563 0.89934 0.90505 0.89905 0.89188 0.89622 0.88812 0.89652 0.89605 0.91471 0.91730 0.76645 0.91017 0.89303 0.89970 0.95497 0.95136 0.99845 0.92584 0.95693 0.87940 0.90377 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.39 36.00 0.37 -0.15 16 2 C 0.03 0.25 7.33 -82.10 -0.60 -0.35 16 3 N -0.37 -4.14 12.07 33.42 0.40 -3.73 16 4 O 0.10 0.98 11.20 17.18 0.19 1.17 16 5 C -0.02 -0.18 7.49 -35.31 -0.26 -0.44 16 6 C -0.08 -0.36 10.25 36.00 0.37 0.01 16 7 C -0.20 -1.63 5.58 -104.42 -0.58 -2.21 16 8 C -0.05 -0.34 5.58 -27.89 -0.16 -0.49 16 9 C 0.15 1.32 5.66 -4.05 -0.02 1.30 16 10 N -0.75 -7.78 5.47 -65.23 -0.36 -8.13 16 11 C 0.71 10.25 8.31 -86.92 -0.72 9.52 16 12 O -0.60 -10.73 15.83 5.29 0.08 -10.65 16 13 N -0.63 -8.89 3.01 -178.19 -0.54 -9.42 16 14 C 0.14 2.02 6.58 -3.60 -0.02 2.00 16 15 C 0.04 0.61 5.62 -3.70 -0.02 0.59 16 16 N -0.53 -10.13 4.62 -235.76 -1.09 -11.22 16 17 C 0.16 3.72 3.79 -4.97 -0.02 3.70 16 18 C -0.51 -13.70 8.96 -34.44 -0.31 -14.01 16 19 H 0.08 2.34 7.37 -52.49 -0.39 1.96 16 20 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 21 N -0.90 -26.45 13.96 55.43 0.77 -25.68 16 22 Si 0.88 20.76 27.46 -169.99 -4.67 16.09 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.11 6.55 56.52 0.37 -5.74 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 26 C 0.05 0.83 5.46 -3.70 -0.02 0.81 16 27 C 0.12 1.50 6.59 -3.60 -0.02 1.48 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.08 0.43 7.65 -51.93 -0.40 0.03 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.40 8.05 -51.93 -0.42 -0.02 16 34 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.09 0.46 7.65 -51.93 -0.40 0.07 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.40 3.21 5.97 -40.82 -0.24 2.96 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.09 1.31 7.11 -51.92 -0.37 0.95 16 41 H 0.08 1.28 7.99 -51.93 -0.41 0.86 16 42 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.03 0.71 7.04 -51.93 -0.37 0.35 16 44 H -0.02 -0.37 7.54 -51.93 -0.39 -0.77 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 1.90 6.67 -51.93 -0.35 1.55 16 48 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.07 0.68 5.63 -51.93 -0.29 0.39 16 LS Contribution 393.91 15.07 5.94 5.94 Total: -1.00 -34.01 393.91 -9.22 -43.22 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.84 Total: -1.18 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -2.12 Total: 3.58 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.81 Total: -58.18 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.28 Total: -9.47 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.01 -9.22 -43.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601569708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.158 kcal (2) G-P(sol) polarization free energy of solvation -34.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds