Wall clock time and date at job start Sat Apr 11 2020 04:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30182 * 126.80780 * 2 1 4 4 O 1.20917 * 111.60384 * 180.25133 * 3 2 1 5 5 C 1.34041 * 111.57032 * 359.75018 * 4 3 2 6 6 C 1.50697 * 126.77553 * 180.02562 * 5 4 3 7 7 C 1.35442 * 106.44668 * 359.97438 * 5 4 3 8 8 C 1.50699 * 128.01081 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47285 * 89.99912 * 8 7 5 10 10 N 1.46497 * 109.47228 * 180.02562 * 9 8 7 11 11 C 1.34778 * 120.00173 * 180.02562 * 10 9 8 12 12 O 1.21587 * 119.99775 * 5.08702 * 11 10 9 13 13 N 1.34769 * 120.00483 * 185.08230 * 11 10 9 14 14 C 1.47077 * 120.88700 * 175.00680 * 13 11 10 15 15 C 1.53242 * 108.52266 * 231.16577 * 14 13 11 16 16 N 1.46898 * 109.33811 * 306.16450 * 15 14 13 17 17 C 1.46905 * 110.99962 * 187.25127 * 16 15 14 18 18 C 1.50699 * 109.46823 * 170.00059 * 17 16 15 19 19 H 1.08000 * 120.00384 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99666 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00216 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00007 * 359.72468 * 20 18 17 23 23 H 1.48493 * 109.47244 * 270.27691 * 22 20 18 24 24 H 1.48499 * 109.47212 * 30.27822 * 22 20 18 25 25 H 1.48498 * 109.47171 * 150.27595 * 22 20 18 26 26 C 1.46897 * 111.26900 * 63.10761 * 16 15 14 27 27 C 1.47078 * 120.88089 * 354.98254 * 13 11 10 28 28 H 1.09002 * 109.47325 * 270.16910 * 1 2 3 29 29 H 1.09007 * 109.46624 * 30.16541 * 1 2 3 30 30 H 1.08995 * 109.47120 * 150.16259 * 1 2 3 31 31 H 1.09002 * 109.46839 * 269.99506 * 6 5 4 32 32 H 1.08993 * 109.47583 * 29.99466 * 6 5 4 33 33 H 1.09000 * 109.47289 * 149.99479 * 6 5 4 34 34 H 1.09001 * 109.46867 * 330.00293 * 8 7 5 35 35 H 1.09001 * 109.47825 * 210.00520 * 8 7 5 36 36 H 1.09001 * 109.46857 * 60.00374 * 9 8 7 37 37 H 1.08991 * 109.47556 * 300.00650 * 9 8 7 38 38 H 0.97000 * 120.00112 * 0.02562 * 10 9 8 39 39 H 1.08999 * 109.63280 * 111.45350 * 14 13 11 40 40 H 1.09008 * 109.78829 * 350.96590 * 14 13 11 41 41 H 1.09000 * 109.49575 * 186.20628 * 15 14 13 42 42 H 1.09002 * 109.49567 * 66.12640 * 15 14 13 43 43 H 1.08997 * 109.46461 * 50.00219 * 17 16 15 44 44 H 1.09001 * 109.47134 * 290.00558 * 17 16 15 45 45 H 0.96989 * 120.00134 * 179.73023 * 21 20 18 46 46 H 1.09002 * 109.49615 * 56.84731 * 26 16 15 47 47 H 1.08992 * 109.49623 * 176.93637 * 26 16 15 48 48 H 1.09000 * 109.63155 * 248.54707 * 27 13 11 49 49 H 1.09003 * 109.62875 * 9.12800 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7252 -0.0049 5 6 3.6024 -0.6069 -0.0035 6 6 4.9021 -1.3697 -0.0078 7 6 2.3540 -1.1321 0.0037 8 6 1.9589 -2.5864 0.0076 9 6 1.8329 -3.0768 1.4513 10 7 1.4494 -4.4907 1.4550 11 6 1.2785 -5.1396 2.6239 12 8 1.3516 -4.5304 3.6736 13 7 1.0266 -6.4635 2.6293 14 6 0.9450 -7.2114 3.8930 15 6 1.8604 -8.4363 3.7938 16 7 1.5131 -9.2071 2.5925 17 6 2.2492 -10.4778 2.5512 18 6 1.6943 -11.3441 1.4500 19 1 0.8771 -10.9864 0.8413 20 6 2.2302 -12.5934 1.2195 21 7 1.7464 -13.3493 0.2581 22 14 3.6489 -13.2090 2.2672 23 1 4.9354 -12.8087 1.6430 24 1 3.5533 -12.6183 3.6263 25 1 3.5858 -14.6894 2.3654 26 6 1.7457 -8.4243 1.3714 27 6 0.8256 -7.1988 1.3714 28 1 -0.3634 0.0030 1.0277 29 1 -0.3633 0.8886 -0.5164 30 1 -0.3633 -0.8914 -0.5113 31 1 5.2110 -1.5553 -1.0366 32 1 5.6681 -0.7854 0.5018 33 1 4.7672 -2.3204 0.5081 34 1 2.7199 -3.1709 -0.5095 35 1 1.0022 -2.7045 -0.5012 36 1 1.0719 -2.4923 1.9684 37 1 2.7895 -2.9588 1.9600 38 1 1.3185 -4.9600 0.6162 39 1 -0.0822 -7.5347 4.0615 40 1 1.2695 -6.5777 4.7185 41 1 1.7291 -9.0611 4.6773 42 1 2.8985 -8.1104 3.7294 43 1 2.1413 -10.9912 3.5066 44 1 3.3043 -10.2805 2.3618 45 1 2.1259 -14.2265 0.0934 46 1 2.7854 -8.0983 1.3407 47 1 1.5311 -9.0401 0.4981 48 1 -0.2132 -7.5208 1.2975 49 1 1.0732 -6.5550 0.5274 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601569708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:45:41 Heat of formation + Delta-G solvation = 18.296604 kcal Electronic energy + Delta-G solvation = -28944.282988 eV Core-core repulsion = 24909.029838 eV Total energy + Delta-G solvation = -4035.253150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.93374 -41.44204 -39.21243 -37.41736 -35.95380 -35.56217 -34.58168 -34.31772 -32.25169 -31.19801 -30.27276 -29.60360 -28.35555 -27.19612 -25.08504 -24.54694 -23.36964 -22.37554 -22.10982 -21.13005 -20.45472 -19.17414 -18.88054 -18.68479 -17.89007 -17.37350 -16.85832 -16.58041 -16.08321 -15.98528 -15.75002 -15.54350 -15.22031 -15.05725 -14.93691 -14.56909 -14.40354 -14.31144 -14.06238 -13.93304 -13.83801 -13.61404 -13.45635 -13.17979 -13.14314 -13.02839 -12.86625 -12.52085 -12.48601 -12.34436 -12.18879 -11.90195 -11.82195 -11.78088 -11.37751 -11.23888 -10.83787 -10.76404 -10.26024 -10.10144 -9.58398 -9.02342 -8.25720 -6.28319 0.47165 1.15259 1.36139 1.38829 1.48299 1.63143 2.10741 2.20315 2.36132 2.86387 3.06597 3.18451 3.25566 3.51839 3.79434 3.96374 3.97462 4.05599 4.09261 4.20012 4.27664 4.29817 4.38131 4.44381 4.52634 4.53919 4.64587 4.68229 4.70330 4.76250 4.81610 4.84035 4.88839 4.90747 4.95909 4.96605 5.06026 5.07590 5.15426 5.16023 5.31879 5.44502 5.47084 5.55786 5.87844 6.04230 6.34171 6.62373 6.78104 6.93267 7.29841 7.35359 7.52174 8.90082 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018979 B = 0.002066 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.977336 B =13548.635680 C =13986.947871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.018 3.982 3 N -0.404 5.404 4 O 0.078 5.922 5 C -0.021 4.021 6 C -0.078 4.078 7 C -0.209 4.209 8 C -0.040 4.040 9 C 0.149 3.851 10 N -0.733 5.733 11 C 0.706 3.294 12 O -0.634 6.634 13 N -0.627 5.627 14 C 0.143 3.857 15 C 0.042 3.958 16 N -0.539 5.539 17 C 0.171 3.829 18 C -0.511 4.511 19 H 0.047 0.953 20 C 0.011 3.989 21 N -0.945 5.945 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.251 1.251 25 H -0.284 1.284 26 C 0.051 3.949 27 C 0.126 3.874 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.410 0.590 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.025 0.975 43 H 0.030 0.970 44 H -0.016 1.016 45 H 0.266 0.734 46 H 0.026 0.974 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.671 24.197 -2.062 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 N -0.113 5.113 4 O 0.017 5.983 5 C -0.085 4.085 6 C -0.135 4.135 7 C -0.214 4.214 8 C -0.078 4.078 9 C 0.025 3.975 10 N -0.392 5.392 11 C 0.407 3.593 12 O -0.516 6.516 13 N -0.364 5.364 14 C 0.019 3.981 15 C -0.087 4.087 16 N -0.264 5.264 17 C 0.044 3.956 18 C -0.549 4.549 19 H 0.065 0.935 20 C -0.187 4.187 21 N -0.586 5.586 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.175 1.175 25 H -0.210 1.210 26 C -0.078 4.078 27 C 0.003 3.997 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.250 0.750 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.043 0.957 43 H 0.048 0.952 44 H 0.002 0.998 45 H 0.075 0.925 46 H 0.044 0.956 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.066 25.702 -1.371 25.821 hybrid contribution 1.207 -1.441 -0.109 1.883 sum 3.273 24.261 -1.480 24.526 Atomic orbital electron populations 1.20311 0.84396 1.04821 1.04061 1.24005 1.00169 0.88581 1.01342 1.73848 0.89879 1.25257 1.22353 1.84764 1.21454 1.23726 1.68341 1.24976 0.99666 0.83199 1.00619 1.20582 0.88624 0.98654 1.05609 1.20865 0.91528 0.97403 1.11555 1.19998 1.04764 0.87797 0.95204 1.21060 0.99880 0.79355 0.97207 1.45089 1.74895 1.12205 1.07011 1.15933 0.77593 0.81370 0.84371 1.90872 1.61204 1.67095 1.32461 1.47397 1.74441 1.05973 1.08584 1.21486 1.00152 0.90913 0.85530 1.22518 0.96790 0.94974 0.94427 1.61808 1.58133 1.04317 1.02111 1.19946 0.91081 0.87941 0.96610 1.21220 1.17738 1.00234 1.15730 0.93473 1.25757 0.99637 0.96920 0.96366 1.70025 1.44040 1.11398 1.33099 0.85810 0.79665 0.77602 0.80420 1.19513 1.17515 1.20999 1.22351 0.97032 0.94342 0.94115 1.21840 1.00335 0.92083 0.85423 0.89734 0.90383 0.88004 0.87411 0.88833 0.88022 0.87637 0.87965 0.92902 0.92663 0.75039 0.90597 0.89220 0.89242 0.95682 0.95228 0.99829 0.92504 0.95603 0.90272 0.90281 0.87185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.39 71.24 0.74 -0.23 16 2 C 0.02 0.32 7.33 43.58 0.32 0.64 16 3 N -0.40 -9.12 12.07 -49.55 -0.60 -9.72 16 4 O 0.08 1.59 11.20 71.63 0.80 2.39 16 5 C -0.02 -0.31 7.49 25.04 0.19 -0.12 16 6 C -0.08 -0.55 10.25 71.23 0.73 0.18 16 7 C -0.21 -3.06 5.58 -19.74 -0.11 -3.17 16 8 C -0.04 -0.39 5.58 29.85 0.17 -0.22 16 9 C 0.15 2.38 5.66 86.38 0.49 2.87 16 10 N -0.73 -13.03 5.47 -478.56 -2.62 -15.65 16 11 C 0.71 18.86 8.31 179.06 1.49 20.35 16 12 O -0.63 -21.95 15.83 -3.99 -0.06 -22.02 16 13 N -0.63 -16.42 3.01 -835.92 -2.52 -18.94 16 14 C 0.14 3.96 6.58 86.35 0.57 4.53 16 15 C 0.04 1.30 5.62 86.38 0.49 1.78 16 16 N -0.54 -20.21 4.62 -899.81 -4.16 -24.37 16 17 C 0.17 7.69 3.79 85.56 0.32 8.01 16 18 C -0.51 -27.63 8.96 25.60 0.23 -27.40 16 19 H 0.05 2.81 7.37 -2.91 -0.02 2.78 16 20 C 0.01 0.60 5.47 84.65 0.46 1.07 16 21 N -0.94 -56.59 13.96 21.45 0.30 -56.29 16 22 Si 0.94 42.32 27.46 68.60 1.88 44.20 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.25 -10.57 6.55 99.48 0.65 -9.92 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 C 0.05 1.63 5.46 86.39 0.47 2.11 16 27 C 0.13 2.97 6.59 86.35 0.57 3.54 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.10 0.82 7.65 -2.39 -0.02 0.80 16 31 H 0.11 0.41 8.14 -2.39 -0.02 0.40 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.10 0.59 8.05 -2.39 -0.02 0.57 16 34 H 0.11 0.66 8.08 -2.39 -0.02 0.64 16 35 H 0.10 0.72 7.65 -2.39 -0.02 0.70 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.41 4.99 5.97 -92.71 -0.55 4.44 16 39 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.09 2.52 7.11 -2.38 -0.02 2.50 16 41 H 0.09 2.62 7.99 -2.39 -0.02 2.60 16 42 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.03 1.34 7.04 -2.39 -0.02 1.32 16 44 H -0.02 -0.72 7.54 -2.39 -0.02 -0.73 16 45 H 0.27 14.94 8.31 -92.72 -0.77 14.17 16 46 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.08 2.94 6.67 -2.39 -0.02 2.92 16 48 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.11 1.70 5.63 -2.39 -0.01 1.69 16 Total: -1.00 -75.18 393.91 0.50 -74.68 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.35 Total: 11.80 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 7.12 Total: 13.92 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -9.59 Total: -124.97 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.74 Total: -19.63 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.88 Total: 44.20 kcal Total: -75.18 0.50 -74.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601569708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.972 kcal (2) G-P(sol) polarization free energy of solvation -75.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds