Wall clock time and date at job start Sat Apr 11 2020 04:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99913 * 2 1 4 4 C 1.52998 * 109.47194 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46657 * 179.97438 * 4 3 2 6 6 C 1.34264 * 125.74960 * 125.27919 * 5 4 3 7 7 C 1.38044 * 107.41663 * 180.18068 * 6 5 4 8 8 C 1.47423 * 126.41445 * 179.87250 * 7 6 5 9 9 O 1.21602 * 120.00013 * 179.69211 * 8 7 6 10 10 N 1.34780 * 120.00210 * 359.68473 * 8 7 6 11 11 C 1.46498 * 120.00246 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47108 * 180.02562 * 11 10 8 13 13 H 1.09002 * 110.77651 * 303.20678 * 12 11 10 14 14 C 1.55160 * 110.71864 * 179.97438 * 12 11 10 15 15 C 1.54910 * 101.58122 * 206.13184 * 14 12 11 16 16 N 1.47425 * 104.83231 * 37.00939 * 15 14 12 17 17 C 1.36933 * 125.64542 * 156.13438 * 16 15 14 18 18 H 1.08005 * 119.99541 * 179.69129 * 17 16 15 19 19 C 1.38813 * 120.00564 * 359.69503 * 17 16 15 20 20 N 1.31616 * 119.99514 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00305 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47136 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47165 * 119.99490 * 21 19 17 24 24 H 1.48493 * 109.47465 * 239.99887 * 21 19 17 25 25 C 1.47026 * 108.70074 * 335.87083 * 16 15 14 26 26 C 1.41293 * 107.16620 * 359.60558 * 7 6 5 27 27 C 1.50703 * 125.98402 * 180.24164 * 26 7 6 28 28 N 1.30442 * 108.02933 * 0.24291 * 26 7 6 29 29 H 1.09003 * 109.46721 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47044 * 299.99382 * 1 2 3 31 31 H 1.08992 * 109.47528 * 59.99651 * 1 2 3 32 32 H 1.09005 * 109.46590 * 60.00188 * 3 2 1 33 33 H 1.09000 * 109.47439 * 300.00569 * 3 2 1 34 34 H 1.08998 * 109.46659 * 60.00913 * 4 3 2 35 35 H 1.08992 * 109.47507 * 299.99938 * 4 3 2 36 36 H 1.08003 * 126.28838 * 0.02853 * 6 5 4 37 37 H 0.96999 * 119.99460 * 359.97438 * 10 8 7 38 38 H 1.09003 * 109.47365 * 59.99474 * 11 10 8 39 39 H 1.09000 * 109.46701 * 299.99851 * 11 10 8 40 40 H 1.08991 * 111.00600 * 324.20802 * 14 12 11 41 41 H 1.09004 * 111.00084 * 88.02248 * 14 12 11 42 42 H 1.09001 * 110.36852 * 278.17238 * 15 14 12 43 43 H 1.08998 * 110.36449 * 155.84885 * 15 14 12 44 44 H 0.97002 * 119.99999 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.87531 * 120.47707 * 25 16 15 46 46 H 1.08996 * 109.88343 * 241.48426 * 25 16 15 47 47 H 1.08996 * 109.46897 * 89.99954 * 27 26 7 48 48 H 1.08999 * 109.46937 * 210.00499 * 27 26 7 49 49 H 1.09002 * 109.47261 * 329.99794 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5232 -0.0013 6 6 5.0255 2.9841 0.8878 7 6 5.3260 4.2845 0.5352 8 6 6.2617 5.1861 1.2316 9 8 6.4436 6.3137 0.8144 10 7 6.9155 4.7606 2.3308 11 6 7.8449 5.6567 3.0231 12 6 8.4484 4.9331 4.2285 13 1 7.6652 4.5783 4.8984 14 6 9.4396 5.8575 4.9838 15 6 10.3837 4.8244 5.6481 16 7 10.5217 3.7450 4.6535 17 6 11.5684 2.8662 4.5696 18 1 11.5737 2.1043 3.8042 19 6 12.6226 2.9545 5.4684 20 7 12.6163 3.8833 6.4009 21 14 14.0502 1.7552 5.3544 22 1 13.8182 0.8151 4.2284 23 1 15.3100 2.5060 5.1213 24 1 14.1570 0.9907 6.6229 25 6 9.3462 3.7645 3.7706 26 6 4.5735 4.5875 -0.6216 27 6 4.5841 5.8972 -1.3671 28 7 3.8678 3.5350 -0.9313 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.6885 1.8463 0.8901 33 1 1.6885 1.8465 -0.8899 34 1 3.8566 0.6441 -0.8910 35 1 3.8575 0.6437 0.8890 36 1 5.4329 2.4386 1.7262 37 1 6.7699 3.8613 2.6638 38 1 7.3099 6.5440 3.3618 39 1 8.6418 5.9515 2.3404 40 1 9.9857 6.4955 4.2890 41 1 8.9222 6.4544 5.7349 42 1 9.9393 4.4398 6.5661 43 1 11.3540 5.2756 5.8554 44 1 13.3528 3.9449 7.0292 45 1 9.6604 3.9207 2.7386 46 1 8.8040 2.8226 3.8543 47 1 5.3557 5.8709 -2.1365 48 1 3.6118 6.0582 -1.8327 49 1 4.7926 6.7098 -0.6711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028540586.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:47:38 Heat of formation + Delta-G solvation = 16.781842 kcal Electronic energy + Delta-G solvation = -28480.063217 eV Core-core repulsion = 24444.744382 eV Total energy + Delta-G solvation = -4035.318835 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.70453 -39.24971 -38.47831 -37.56201 -34.81430 -34.43140 -32.59656 -31.38856 -30.46925 -29.58015 -28.31092 -27.91325 -26.52443 -25.51037 -24.01077 -23.30801 -22.32800 -20.62740 -20.16717 -19.83853 -19.40269 -17.94204 -17.13022 -16.81156 -16.75624 -16.03895 -15.78435 -15.75720 -15.35463 -14.93848 -14.71509 -14.52212 -14.23885 -13.95695 -13.77452 -13.51305 -13.12587 -13.02143 -12.73239 -12.50868 -12.39672 -12.19455 -12.07589 -11.85180 -11.76298 -11.67801 -11.47722 -11.05807 -10.95603 -10.82726 -10.41861 -10.29187 -10.12276 -10.00250 -9.88748 -9.71312 -9.62257 -9.48961 -9.05208 -8.73823 -8.66372 -6.84124 -5.66455 -3.08128 1.24508 1.84023 1.99948 3.21427 3.35771 3.38783 3.44237 3.46718 3.47721 4.04162 4.31593 4.35138 4.44628 4.47864 4.67492 4.78145 4.81239 4.89384 5.04981 5.10880 5.14561 5.15984 5.23471 5.27316 5.28513 5.41702 5.52605 5.58638 5.70726 5.75998 5.84823 5.90351 6.10000 6.15089 6.34823 6.35050 6.39612 6.50306 6.53855 6.55927 6.59926 6.74221 6.91324 7.31387 7.50893 7.62260 7.66498 7.85267 8.35851 8.37683 9.21246 9.82285 10.47065 11.37469 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012195 B = 0.002207 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.487410 B =12683.092177 C =14114.375279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.051 3.949 4 C 0.134 3.866 5 N -0.359 5.359 6 C 0.105 3.895 7 C -0.283 4.283 8 C 0.592 3.408 9 O -0.545 6.545 10 N -0.724 5.724 11 C 0.135 3.865 12 C -0.115 4.115 13 H 0.075 0.925 14 C -0.135 4.135 15 C 0.151 3.849 16 N -0.604 5.604 17 C -0.222 4.222 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.141 3.859 26 C 0.135 3.865 27 C -0.077 4.077 28 N -0.303 5.303 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.185 0.815 37 H 0.397 0.603 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.011 0.989 43 H 0.107 0.893 44 H 0.251 0.749 45 H 0.025 0.975 46 H 0.016 0.984 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.513 -2.745 -11.447 26.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.026 4.026 4 C 0.013 3.987 5 N -0.139 5.139 6 C -0.046 4.046 7 C -0.298 4.298 8 C 0.379 3.621 9 O -0.423 6.423 10 N -0.374 5.374 11 C 0.012 3.988 12 C -0.134 4.134 13 H 0.093 0.907 14 C -0.174 4.174 15 C 0.026 3.974 16 N -0.331 5.331 17 C -0.350 4.350 18 H 0.095 0.905 19 C -0.208 4.208 20 N -0.570 5.570 21 Si 0.745 3.255 22 H -0.206 1.206 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.015 3.985 26 C -0.033 4.033 27 C -0.136 4.136 28 N -0.125 5.125 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.128 0.872 36 H 0.202 0.798 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.029 0.971 43 H 0.125 0.875 44 H 0.062 0.938 45 H 0.043 0.957 46 H 0.034 0.966 47 H 0.099 0.901 48 H 0.088 0.912 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -23.983 -2.817 -12.453 27.169 hybrid contribution 0.987 -0.844 0.869 1.563 sum -22.995 -3.662 -11.583 26.007 Atomic orbital electron populations 1.22787 0.79872 1.03183 1.00394 1.87786 1.20638 1.26827 1.95608 1.22640 0.92452 0.85408 1.02120 1.21505 0.92773 0.78626 1.05837 1.48177 1.32769 1.11951 1.20965 1.23167 0.91979 0.94537 0.94870 1.20323 1.10474 0.95368 1.03656 1.17197 0.79205 0.86068 0.79623 1.90732 1.65445 1.19904 1.66254 1.45908 1.45069 1.17693 1.28760 1.21431 0.91771 0.92297 0.93324 1.22441 0.97743 0.97575 0.95634 0.90654 1.23005 0.97298 0.98132 0.99001 1.21939 0.99140 0.86688 0.89585 1.44515 1.19100 1.36022 1.33416 1.19115 0.96043 1.07763 1.12088 0.90512 1.24795 0.98868 0.99265 0.97867 1.69806 1.32336 1.34879 1.20027 0.85999 0.82282 0.80019 0.77205 1.20566 1.21716 1.21784 1.21322 0.88604 0.94270 0.94276 1.22497 0.92212 0.95282 0.93288 1.20353 1.02512 0.90713 0.99993 1.77160 1.25320 0.96575 1.13452 0.89101 0.93760 0.93705 0.92553 0.91474 0.88289 0.87167 0.79785 0.76954 0.91613 0.91182 0.91787 0.92125 0.97054 0.87525 0.93778 0.95737 0.96581 0.90133 0.91200 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -2.94 10.70 -35.23 -0.38 -3.32 16 3 C 0.05 0.36 6.11 37.16 0.23 0.59 16 4 C 0.13 0.89 6.86 -4.04 -0.03 0.87 16 5 N -0.36 -3.40 3.65 -60.81 -0.22 -3.62 16 6 C 0.11 0.97 10.95 -16.56 -0.18 0.79 16 7 C -0.28 -3.44 6.13 -105.07 -0.64 -4.08 16 8 C 0.59 8.34 7.81 -12.52 -0.10 8.24 16 9 O -0.54 -9.28 14.92 5.28 0.08 -9.21 16 10 N -0.72 -9.23 5.39 -61.39 -0.33 -9.56 16 11 C 0.14 1.96 4.99 -4.04 -0.02 1.94 16 12 C -0.11 -1.85 3.02 -88.79 -0.27 -2.12 16 13 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 14 C -0.14 -2.46 6.53 -24.58 -0.16 -2.62 16 15 C 0.15 3.60 5.89 -2.53 -0.01 3.59 16 16 N -0.60 -15.22 3.39 -170.07 -0.58 -15.80 16 17 C -0.22 -6.13 10.27 -15.06 -0.15 -6.29 16 18 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 19 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 20 N -0.92 -26.71 10.09 55.49 0.56 -26.15 16 21 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 C 0.14 2.80 6.52 -3.07 -0.02 2.78 16 26 C 0.13 1.66 7.26 -82.02 -0.60 1.06 16 27 C -0.08 -0.82 9.92 36.01 0.36 -0.46 16 28 N -0.30 -3.58 12.33 33.90 0.42 -3.16 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.11 0.50 8.06 -51.93 -0.42 0.08 16 36 H 0.19 1.04 7.46 -52.48 -0.39 0.65 16 37 H 0.40 4.14 7.25 -40.82 -0.30 3.85 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.13 8.06 -51.93 -0.42 0.72 16 40 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.11 2.88 5.87 -51.93 -0.30 2.58 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.02 0.50 7.77 -51.93 -0.40 0.10 16 46 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.10 1.14 6.55 -51.93 -0.34 0.80 16 LS Contribution 401.17 15.07 6.05 6.05 Total: -1.00 -34.35 401.17 -8.05 -42.39 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -8.03 Total: 0.32 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -0.58 Total: 5.11 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.15 Total: -58.29 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.30 Total: -12.53 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.35 -8.05 -42.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028540586.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.174 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds