Wall clock time and date at job start Sat Apr 11 2020 04:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30831 * 125.90537 * 2 1 4 4 N 1.40079 * 108.21072 * 180.26113 * 3 2 1 5 5 H 0.97001 * 126.03907 * 179.69962 * 4 3 2 6 6 C 1.34954 * 107.92291 * 359.71948 * 4 3 2 7 7 C 1.50702 * 126.12595 * 180.02562 * 6 4 3 8 8 C 1.35312 * 107.74342 * 359.97438 * 6 4 3 9 9 C 1.50702 * 126.03579 * 179.97438 * 8 6 4 10 10 C 1.52998 * 109.46895 * 90.00518 * 9 8 6 11 11 H 1.09001 * 109.47671 * 54.99968 * 10 9 8 12 12 C 1.52997 * 109.47291 * 294.99677 * 10 9 8 13 13 C 1.50706 * 109.47348 * 174.99759 * 10 9 8 14 14 O 1.21283 * 119.99503 * 359.97438 * 13 10 9 15 15 N 1.34773 * 120.00081 * 179.72561 * 13 10 9 16 16 C 1.46506 * 119.99968 * 180.02562 * 15 13 10 17 17 C 1.52992 * 109.47161 * 179.97438 * 16 15 13 18 18 O 1.42896 * 112.94700 * 53.40156 * 17 16 15 19 19 C 1.53953 * 113.74029 * 281.67261 * 17 16 15 20 20 N 1.47586 * 86.11747 * 222.04969 * 19 17 16 21 21 C 1.36928 * 134.49265 * 204.64065 * 20 19 17 22 22 H 1.07996 * 120.00349 * 179.97438 * 21 20 19 23 23 C 1.38815 * 119.99909 * 0.02562 * 21 20 19 24 24 N 1.31617 * 120.00228 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99955 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47141 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47217 * 119.99725 * 25 23 21 28 28 H 1.48498 * 109.47095 * 239.99665 * 25 23 21 29 29 C 1.47581 * 91.01184 * 24.63671 * 20 19 17 30 30 H 1.09003 * 109.46474 * 270.21097 * 1 2 3 31 31 H 1.08997 * 109.46906 * 30.20496 * 1 2 3 32 32 H 1.08995 * 109.47220 * 150.21105 * 1 2 3 33 33 H 1.08996 * 109.46894 * 269.97476 * 7 6 4 34 34 H 1.08998 * 109.47284 * 29.97780 * 7 6 4 35 35 H 1.09001 * 109.46893 * 149.97527 * 7 6 4 36 36 H 1.08994 * 109.47678 * 330.00483 * 9 8 6 37 37 H 1.09004 * 109.47007 * 210.00055 * 9 8 6 38 38 H 1.09002 * 109.46917 * 59.99921 * 12 10 9 39 39 H 1.08995 * 109.47505 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.47000 * 300.00701 * 12 10 9 41 41 H 0.96998 * 120.00525 * 359.97438 * 15 13 10 42 42 H 1.09004 * 109.46587 * 299.99661 * 16 15 13 43 43 H 1.08998 * 109.47213 * 59.99069 * 16 15 13 44 44 H 0.96696 * 114.00243 * 309.66717 * 18 17 16 45 45 H 1.09002 * 113.76513 * 336.34862 * 19 17 16 46 46 H 1.08997 * 113.76920 * 107.74723 * 19 17 16 47 47 H 0.96995 * 119.99958 * 180.02562 * 24 23 21 48 48 H 1.08999 * 113.77105 * 221.05712 * 29 20 19 49 49 H 1.09000 * 113.76759 * 89.66704 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0597 0.0000 4 7 3.6088 0.6340 -0.0061 5 1 4.3909 1.2078 -0.0115 6 6 3.6142 -0.7156 -0.0034 7 6 4.8350 -1.5992 -0.0074 8 6 2.3271 -1.1331 0.0047 9 6 1.8598 -2.5658 0.0096 10 6 1.7099 -3.0483 1.4538 11 1 1.0475 -2.3733 1.9956 12 6 3.0822 -3.0679 2.1300 13 6 1.1264 -4.4378 1.4612 14 8 0.8566 -4.9878 0.4144 15 7 0.9092 -5.0712 2.6308 16 6 0.3425 -6.4222 2.6380 17 6 0.1994 -6.9075 4.0818 18 8 -0.5301 -5.9964 4.9062 19 6 1.5206 -7.3909 4.7070 20 7 0.7300 -8.5010 5.2735 21 6 0.8719 -9.3242 6.3584 22 1 0.1300 -10.0823 6.5617 23 6 1.9686 -9.1837 7.1976 24 7 2.8725 -8.2595 6.9502 25 14 2.1625 -10.3073 8.6773 26 1 1.0201 -11.2545 8.7327 27 1 3.4320 -11.0686 8.5578 28 1 2.1894 -9.4917 9.9180 29 6 -0.2749 -8.3672 4.2010 30 1 -0.3632 0.0038 1.0277 31 1 -0.3633 0.8881 -0.5170 32 1 -0.3633 -0.8918 -0.5105 33 1 5.1241 -1.8146 -1.0360 34 1 5.6537 -1.0901 0.5012 35 1 4.6100 -2.5320 0.5097 36 1 2.5903 -3.1881 -0.5073 37 1 0.8981 -2.6361 -0.4986 38 1 3.5042 -2.0629 2.1247 39 1 2.9755 -3.4120 3.1587 40 1 3.7447 -3.7429 1.5882 41 1 1.1287 -4.6329 3.4679 42 1 -0.6372 -6.4077 2.1604 43 1 1.0028 -7.0961 2.0922 44 1 -0.2161 -5.0832 4.8566 45 1 2.2626 -7.7091 3.9746 46 1 1.9257 -6.7123 5.4576 47 1 3.6390 -8.1616 7.5364 48 1 -1.3034 -8.4680 4.5475 49 1 -0.0604 -8.9722 3.3200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724490607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:48:34 Heat of formation + Delta-G solvation = 31.660018 kcal Electronic energy + Delta-G solvation = -29409.132821 eV Core-core repulsion = 25374.459152 eV Total energy + Delta-G solvation = -4034.673669 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.70543 -39.97386 -38.67666 -35.35569 -34.88439 -33.99291 -33.71128 -32.01094 -31.36004 -29.00439 -28.36563 -27.87574 -26.08810 -25.82042 -25.00439 -23.33906 -21.76530 -20.42938 -20.20816 -19.37479 -19.19641 -17.65322 -17.40213 -16.69893 -16.16530 -15.73937 -15.54915 -15.34951 -14.71670 -14.58591 -14.06998 -14.00186 -13.95500 -13.69557 -13.52343 -13.40391 -13.20275 -12.88603 -12.68940 -12.68053 -12.63079 -12.47964 -12.25426 -12.19221 -12.00807 -11.74481 -11.32102 -11.07721 -11.07244 -10.94760 -10.76023 -10.65153 -10.40270 -9.95717 -9.65360 -9.50456 -9.46025 -9.21361 -8.89805 -8.83553 -8.56853 -6.90833 -5.78650 -3.10038 1.59139 2.43631 2.59390 2.71995 3.26592 3.38602 3.43988 3.46362 4.35628 4.41544 4.42695 4.51749 4.63219 4.72120 4.81878 4.83369 5.01966 5.06352 5.11836 5.21697 5.25570 5.28770 5.34770 5.36023 5.39169 5.50770 5.57619 5.63164 5.65909 5.72786 5.76873 5.84455 5.93987 6.04515 6.06664 6.14359 6.30315 6.42622 6.46993 6.54374 6.57922 7.00216 7.02781 7.15679 7.45855 7.49319 7.53943 7.94977 8.12153 8.29672 9.02657 9.68890 10.55073 11.38779 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019425 B = 0.002269 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.096445 B =12338.385277 C =13014.100760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.085 3.915 3 N -0.299 5.299 4 N -0.479 5.479 5 H 0.436 0.564 6 C 0.094 3.906 7 C -0.108 4.108 8 C -0.230 4.230 9 C -0.020 4.020 10 C -0.104 4.104 11 H 0.096 0.904 12 C -0.149 4.149 13 C 0.517 3.483 14 O -0.543 6.543 15 N -0.724 5.724 16 C 0.103 3.897 17 C 0.064 3.936 18 O -0.526 6.526 19 C 0.145 3.855 20 N -0.603 5.603 21 C -0.217 4.217 22 H 0.081 0.919 23 C -0.009 4.009 24 N -0.923 5.923 25 Si 0.913 3.087 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.135 3.865 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.398 0.602 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.361 0.639 45 H 0.034 0.966 46 H 0.077 0.923 47 H 0.252 0.748 48 H 0.055 0.945 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 17.798 -14.847 23.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 N -0.122 5.122 4 N -0.187 5.187 5 H 0.280 0.720 6 C -0.035 4.035 7 C -0.166 4.166 8 C -0.241 4.241 9 C -0.059 4.059 10 C -0.126 4.126 11 H 0.115 0.885 12 C -0.206 4.206 13 C 0.303 3.697 14 O -0.420 6.420 15 N -0.376 5.376 16 C -0.022 4.022 17 C 0.021 3.979 18 O -0.330 6.330 19 C 0.019 3.981 20 N -0.329 5.329 21 C -0.344 4.344 22 H 0.099 0.901 23 C -0.205 4.205 24 N -0.570 5.570 25 Si 0.744 3.256 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.217 1.217 29 C 0.009 3.991 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.233 0.767 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.207 0.793 45 H 0.051 0.949 46 H 0.096 0.904 47 H 0.062 0.938 48 H 0.073 0.927 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.144 17.951 -15.136 23.509 hybrid contribution 1.202 -0.412 1.093 1.676 sum 2.346 17.539 -14.044 22.591 Atomic orbital electron populations 1.20226 0.86731 1.03438 1.03179 1.22253 0.96957 0.90226 0.98750 1.77282 0.86480 1.22376 1.26082 1.46150 1.07285 1.04874 1.60366 0.72011 1.20898 0.97011 0.84796 1.00752 1.20773 0.92810 0.99225 1.03788 1.19677 0.91071 0.96201 1.17115 1.19649 1.02450 0.89567 0.94210 1.21300 0.98595 0.93619 0.99057 0.88545 1.21982 0.95293 1.02708 1.00651 1.20641 0.77726 0.87780 0.83511 1.90690 1.51883 1.67890 1.31564 1.45977 1.65139 1.17741 1.08752 1.22028 0.99006 0.82901 0.98268 1.23738 0.96747 0.91072 0.86357 1.86618 1.58748 1.20035 1.67570 1.22888 0.90649 0.89982 0.94578 1.45670 1.23319 1.39077 1.24791 1.19045 1.05821 1.10303 0.99272 0.90076 1.24766 0.97014 0.99359 0.99404 1.69805 1.12912 1.35127 1.39193 0.86021 0.77485 0.79736 0.82373 1.20434 1.21784 1.21713 1.22556 0.95347 0.89012 0.92209 0.90358 0.90969 0.90125 0.90106 0.91035 0.88421 0.90735 0.90256 0.91265 0.91811 0.91788 0.76735 0.91212 0.90384 0.79271 0.94878 0.90438 0.93783 0.92683 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.26 36.01 0.37 -0.23 16 2 C 0.08 0.86 7.22 -82.41 -0.59 0.26 16 3 N -0.30 -3.28 12.70 33.67 0.43 -2.85 16 4 N -0.48 -4.03 7.36 33.48 0.25 -3.78 16 5 H 0.44 2.36 8.96 -182.61 -1.64 0.73 16 6 C 0.09 0.77 6.26 -82.26 -0.52 0.26 16 7 C -0.11 -0.61 9.47 36.01 0.34 -0.26 16 8 C -0.23 -2.17 4.82 -105.05 -0.51 -2.67 16 9 C -0.02 -0.19 4.00 -27.88 -0.11 -0.30 16 10 C -0.10 -0.97 2.72 -91.77 -0.25 -1.22 16 11 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 12 C -0.15 -1.24 7.48 37.16 0.28 -0.96 16 13 C 0.52 6.46 7.16 -10.98 -0.08 6.38 16 14 O -0.54 -8.71 15.92 5.56 0.09 -8.62 16 15 N -0.72 -8.87 5.23 -60.29 -0.32 -9.18 16 16 C 0.10 1.52 5.28 -4.04 -0.02 1.50 16 17 C 0.06 1.14 1.52 -89.70 -0.14 1.00 16 18 O -0.53 -9.39 13.51 -35.23 -0.48 -9.87 16 19 C 0.14 3.25 6.92 -2.97 -0.02 3.23 16 20 N -0.60 -15.42 3.70 -177.76 -0.66 -16.08 16 21 C -0.22 -6.12 10.70 -15.06 -0.16 -6.28 16 22 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.92 -26.97 11.38 55.49 0.63 -26.34 16 25 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 C 0.14 2.77 8.34 -2.98 -0.02 2.74 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.56 7.25 -51.93 -0.38 0.19 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.10 0.58 4.53 -51.93 -0.24 0.34 16 36 H 0.07 0.74 7.77 -51.93 -0.40 0.34 16 37 H 0.08 0.81 7.06 -51.93 -0.37 0.45 16 38 H 0.07 0.53 5.79 -51.93 -0.30 0.23 16 39 H 0.06 0.52 7.55 -51.93 -0.39 0.13 16 40 H 0.06 0.54 6.97 -51.93 -0.36 0.17 16 41 H 0.40 4.15 6.71 -40.82 -0.27 3.88 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 44 H 0.36 4.77 7.61 45.56 0.35 5.12 16 45 H 0.03 0.76 8.03 -51.93 -0.42 0.34 16 46 H 0.08 1.92 7.15 -51.93 -0.37 1.54 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 392.95 15.07 5.92 5.92 Total: -1.00 -36.16 392.95 -8.82 -44.97 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -8.13 Total: 5.59 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -1.53 Total: 3.09 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.33 Total: -58.23 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.39 Total: -18.49 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.16 -8.82 -44.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724490607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.632 kcal (2) G-P(sol) polarization free energy of solvation -36.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds