Wall clock time and date at job start Sat Apr 11 2020 04:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30831 * 125.90537 * 2 1 4 4 N 1.40079 * 108.21072 * 180.26113 * 3 2 1 5 5 H 0.97001 * 126.03907 * 179.69962 * 4 3 2 6 6 C 1.34954 * 107.92291 * 359.71948 * 4 3 2 7 7 C 1.50702 * 126.12595 * 180.02562 * 6 4 3 8 8 C 1.35312 * 107.74342 * 359.97438 * 6 4 3 9 9 C 1.50702 * 126.03579 * 179.97438 * 8 6 4 10 10 C 1.52998 * 109.46895 * 90.00518 * 9 8 6 11 11 H 1.09001 * 109.47671 * 54.99968 * 10 9 8 12 12 C 1.52997 * 109.47291 * 294.99677 * 10 9 8 13 13 C 1.50706 * 109.47348 * 174.99759 * 10 9 8 14 14 O 1.21283 * 119.99503 * 359.97438 * 13 10 9 15 15 N 1.34773 * 120.00081 * 179.72561 * 13 10 9 16 16 C 1.46506 * 119.99968 * 180.02562 * 15 13 10 17 17 C 1.52992 * 109.47161 * 179.97438 * 16 15 13 18 18 O 1.42896 * 112.94700 * 53.40156 * 17 16 15 19 19 C 1.53953 * 113.74029 * 281.67261 * 17 16 15 20 20 N 1.47586 * 86.11747 * 222.04969 * 19 17 16 21 21 C 1.36928 * 134.49265 * 204.64065 * 20 19 17 22 22 H 1.07996 * 120.00349 * 179.97438 * 21 20 19 23 23 C 1.38815 * 119.99909 * 0.02562 * 21 20 19 24 24 N 1.31617 * 120.00228 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99955 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47141 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47217 * 119.99725 * 25 23 21 28 28 H 1.48498 * 109.47095 * 239.99665 * 25 23 21 29 29 C 1.47581 * 91.01184 * 24.63671 * 20 19 17 30 30 H 1.09003 * 109.46474 * 270.21097 * 1 2 3 31 31 H 1.08997 * 109.46906 * 30.20496 * 1 2 3 32 32 H 1.08995 * 109.47220 * 150.21105 * 1 2 3 33 33 H 1.08996 * 109.46894 * 269.97476 * 7 6 4 34 34 H 1.08998 * 109.47284 * 29.97780 * 7 6 4 35 35 H 1.09001 * 109.46893 * 149.97527 * 7 6 4 36 36 H 1.08994 * 109.47678 * 330.00483 * 9 8 6 37 37 H 1.09004 * 109.47007 * 210.00055 * 9 8 6 38 38 H 1.09002 * 109.46917 * 59.99921 * 12 10 9 39 39 H 1.08995 * 109.47505 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.47000 * 300.00701 * 12 10 9 41 41 H 0.96998 * 120.00525 * 359.97438 * 15 13 10 42 42 H 1.09004 * 109.46587 * 299.99661 * 16 15 13 43 43 H 1.08998 * 109.47213 * 59.99069 * 16 15 13 44 44 H 0.96696 * 114.00243 * 309.66717 * 18 17 16 45 45 H 1.09002 * 113.76513 * 336.34862 * 19 17 16 46 46 H 1.08997 * 113.76920 * 107.74723 * 19 17 16 47 47 H 0.96995 * 119.99958 * 180.02562 * 24 23 21 48 48 H 1.08999 * 113.77105 * 221.05712 * 29 20 19 49 49 H 1.09000 * 113.76759 * 89.66704 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0597 0.0000 4 7 3.6088 0.6340 -0.0061 5 1 4.3909 1.2078 -0.0115 6 6 3.6142 -0.7156 -0.0034 7 6 4.8350 -1.5992 -0.0074 8 6 2.3271 -1.1331 0.0047 9 6 1.8598 -2.5658 0.0096 10 6 1.7099 -3.0483 1.4538 11 1 1.0475 -2.3733 1.9956 12 6 3.0822 -3.0679 2.1300 13 6 1.1264 -4.4378 1.4612 14 8 0.8566 -4.9878 0.4144 15 7 0.9092 -5.0712 2.6308 16 6 0.3425 -6.4222 2.6380 17 6 0.1994 -6.9075 4.0818 18 8 -0.5301 -5.9964 4.9062 19 6 1.5206 -7.3909 4.7070 20 7 0.7300 -8.5010 5.2735 21 6 0.8719 -9.3242 6.3584 22 1 0.1300 -10.0823 6.5617 23 6 1.9686 -9.1837 7.1976 24 7 2.8725 -8.2595 6.9502 25 14 2.1625 -10.3073 8.6773 26 1 1.0201 -11.2545 8.7327 27 1 3.4320 -11.0686 8.5578 28 1 2.1894 -9.4917 9.9180 29 6 -0.2749 -8.3672 4.2010 30 1 -0.3632 0.0038 1.0277 31 1 -0.3633 0.8881 -0.5170 32 1 -0.3633 -0.8918 -0.5105 33 1 5.1241 -1.8146 -1.0360 34 1 5.6537 -1.0901 0.5012 35 1 4.6100 -2.5320 0.5097 36 1 2.5903 -3.1881 -0.5073 37 1 0.8981 -2.6361 -0.4986 38 1 3.5042 -2.0629 2.1247 39 1 2.9755 -3.4120 3.1587 40 1 3.7447 -3.7429 1.5882 41 1 1.1287 -4.6329 3.4679 42 1 -0.6372 -6.4077 2.1604 43 1 1.0028 -7.0961 2.0922 44 1 -0.2161 -5.0832 4.8566 45 1 2.2626 -7.7091 3.9746 46 1 1.9257 -6.7123 5.4576 47 1 3.6390 -8.1616 7.5364 48 1 -1.3034 -8.4680 4.5475 49 1 -0.0604 -8.9722 3.3200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724490607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:48:33 Heat of formation + Delta-G solvation = 3.738208 kcal Electronic energy + Delta-G solvation = -29410.343602 eV Core-core repulsion = 25374.459152 eV Total energy + Delta-G solvation = -4035.884450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.38365 -41.15858 -40.11223 -36.50182 -36.11396 -35.21639 -34.33638 -33.99285 -32.09008 -30.20132 -29.41517 -28.51703 -27.69467 -26.72021 -26.48349 -24.50489 -23.30615 -21.26566 -21.05953 -20.86028 -19.96866 -18.93850 -18.41952 -18.09830 -17.27783 -17.18034 -16.65846 -16.40273 -16.07233 -15.75040 -15.48239 -15.34561 -14.86363 -14.71487 -14.54762 -14.36102 -14.19835 -13.90167 -13.81466 -13.75138 -13.47063 -13.27617 -13.21888 -13.09627 -12.93268 -12.88813 -12.84726 -12.65181 -12.52749 -12.16678 -12.02937 -11.79279 -11.74552 -11.38241 -11.35580 -10.96571 -10.69942 -10.67113 -10.15590 -10.05734 -9.25567 -8.91784 -7.90239 -5.22453 0.93418 1.46237 1.46976 1.57141 1.70785 1.73253 2.01299 2.24063 2.47241 3.08582 3.30033 3.37532 3.59550 3.73373 3.78754 3.86765 3.94087 4.06836 4.10868 4.25913 4.41649 4.46612 4.53894 4.61371 4.71644 4.71753 4.77206 4.81066 4.81654 4.82973 4.94643 4.96814 4.99239 5.08098 5.14532 5.19104 5.21085 5.28861 5.31306 5.35022 5.42052 5.45555 5.51916 5.79929 5.93881 6.48154 6.54537 6.78811 6.86330 6.93276 7.28830 7.60279 8.53989 9.26465 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019425 B = 0.002269 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.096445 B =12338.385277 C =13014.100760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.074 3.926 3 N -0.332 5.332 4 N -0.474 5.474 5 H 0.447 0.553 6 C 0.102 3.898 7 C -0.108 4.108 8 C -0.246 4.246 9 C -0.012 4.012 10 C -0.094 4.094 11 H 0.111 0.889 12 C -0.146 4.146 13 C 0.520 3.480 14 O -0.578 6.578 15 N -0.718 5.718 16 C 0.118 3.882 17 C 0.099 3.901 18 O -0.541 6.541 19 C 0.145 3.855 20 N -0.637 5.637 21 C -0.232 4.232 22 H 0.081 0.919 23 C -0.066 4.066 24 N -0.950 5.950 25 Si 0.978 3.022 26 H -0.268 1.268 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.128 3.872 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.408 0.592 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.383 0.617 45 H 0.027 0.973 46 H 0.050 0.950 47 H 0.248 0.752 48 H 0.056 0.944 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.561 18.387 -15.060 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 N -0.156 5.156 4 N -0.184 5.184 5 H 0.293 0.707 6 C -0.028 4.028 7 C -0.166 4.166 8 C -0.257 4.257 9 C -0.051 4.051 10 C -0.115 4.115 11 H 0.129 0.871 12 C -0.204 4.204 13 C 0.308 3.692 14 O -0.457 6.457 15 N -0.370 5.370 16 C -0.007 4.007 17 C 0.056 3.944 18 O -0.347 6.347 19 C 0.019 3.981 20 N -0.363 5.363 21 C -0.361 4.361 22 H 0.098 0.902 23 C -0.259 4.259 24 N -0.599 5.599 25 Si 0.807 3.193 26 H -0.192 1.192 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.003 3.997 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.245 0.755 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.232 0.768 45 H 0.044 0.956 46 H 0.068 0.932 47 H 0.057 0.943 48 H 0.074 0.926 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.179 18.581 -15.359 24.136 hybrid contribution 1.182 -0.569 1.111 1.719 sum 2.361 18.012 -14.247 23.086 Atomic orbital electron populations 1.20295 0.85636 1.03805 1.03851 1.22627 0.97945 0.90288 0.98364 1.77228 0.87599 1.23264 1.27548 1.46192 1.07105 1.05245 1.59819 0.70657 1.21273 0.97559 0.84899 0.99042 1.20868 0.92263 0.98746 1.04685 1.19704 0.91623 0.95838 1.18560 1.19520 1.01789 0.89691 0.94051 1.21270 0.99252 0.91549 0.99410 0.87063 1.21980 0.94551 1.03282 1.00538 1.21152 0.76820 0.88576 0.82685 1.90681 1.53379 1.68927 1.32762 1.45887 1.64869 1.16788 1.09491 1.21689 0.99530 0.84048 0.95432 1.23119 0.93222 0.90382 0.87673 1.86569 1.58681 1.21593 1.67868 1.22833 0.92309 0.89089 0.93848 1.46065 1.25247 1.39478 1.25532 1.19395 1.05768 1.10497 1.00397 0.90153 1.25580 0.97047 1.01080 1.02224 1.69971 1.13238 1.36573 1.40109 0.85015 0.77475 0.78014 0.78839 1.19232 1.21822 1.21842 1.22802 0.94425 0.91036 0.91484 0.89470 0.90727 0.89624 0.89132 0.89115 0.88574 0.91280 0.91214 0.90350 0.91622 0.91840 0.75503 0.90353 0.91022 0.76812 0.95562 0.93183 0.94269 0.92553 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.26 71.24 0.73 -0.39 16 2 C 0.07 1.42 7.22 43.10 0.31 1.74 16 3 N -0.33 -7.01 12.70 -47.38 -0.60 -7.62 16 4 N -0.47 -7.33 7.36 -48.00 -0.35 -7.68 16 5 H 0.45 4.20 8.96 -213.33 -1.91 2.28 16 6 C 0.10 1.50 6.26 41.40 0.26 1.76 16 7 C -0.11 -0.97 9.47 71.24 0.67 -0.30 16 8 C -0.25 -4.33 4.82 -20.14 -0.10 -4.43 16 9 C -0.01 -0.21 4.00 29.85 0.12 -0.09 16 10 C -0.09 -1.58 2.72 -11.54 -0.03 -1.61 16 11 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 12 C -0.15 -2.15 7.48 71.98 0.54 -1.61 16 13 C 0.52 12.19 7.16 87.66 0.63 12.81 16 14 O -0.58 -17.90 15.92 -3.04 -0.05 -17.95 16 15 N -0.72 -16.31 5.23 -463.05 -2.42 -18.73 16 16 C 0.12 3.31 5.28 86.38 0.46 3.76 16 17 C 0.10 3.43 1.52 -10.14 -0.02 3.41 16 18 O -0.54 -18.43 13.51 -148.98 -2.01 -20.44 16 19 C 0.14 6.51 6.92 86.48 0.60 7.11 16 20 N -0.64 -32.66 3.70 -720.13 -2.66 -35.32 16 21 C -0.23 -13.18 10.70 84.04 0.90 -12.28 16 22 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 23 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 24 N -0.95 -56.28 11.38 21.65 0.25 -56.03 16 25 Si 0.98 45.82 29.55 68.60 2.03 47.84 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 28 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 29 C 0.13 5.11 8.34 86.48 0.72 5.83 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 1.12 7.25 -2.39 -0.02 1.11 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.10 0.94 4.53 -2.39 -0.01 0.93 16 36 H 0.07 1.30 7.77 -2.39 -0.02 1.28 16 37 H 0.07 1.38 7.06 -2.38 -0.02 1.37 16 38 H 0.08 1.03 5.79 -2.39 -0.01 1.02 16 39 H 0.06 0.95 7.55 -2.39 -0.02 0.93 16 40 H 0.06 0.95 6.97 -2.39 -0.02 0.93 16 41 H 0.41 7.70 6.71 -92.71 -0.62 7.08 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.07 2.15 8.04 -2.39 -0.02 2.13 16 44 H 0.38 9.30 7.61 -74.06 -0.56 8.74 16 45 H 0.03 1.22 8.03 -2.39 -0.02 1.20 16 46 H 0.05 2.51 7.15 -2.39 -0.02 2.50 16 47 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 48 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.07 2.56 8.10 -2.39 -0.02 2.54 16 Total: -1.00 -77.79 392.95 -1.66 -79.45 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -2.09 Total: 24.07 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 6.26 Total: 12.41 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -5.79 Total: -125.38 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -2.06 Total: -38.39 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -77.79 -1.66 -79.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724490607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.189 kcal (2) G-P(sol) polarization free energy of solvation -77.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds