Wall clock time and date at job start Sat Apr 11 2020 04:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33221 * 126.01565 * 2 1 4 4 C 1.31542 * 109.76059 * 179.88470 * 3 2 1 5 5 O 1.35203 * 125.49399 * 180.15118 * 4 3 2 6 6 N 1.34945 * 109.01171 * 0.39132 * 4 3 2 7 7 H 0.97004 * 126.53899 * 179.74481 * 6 4 3 8 8 C 1.36724 * 126.02055 * 180.31820 * 2 1 3 9 9 C 1.46377 * 126.82393 * 359.97438 * 8 2 1 10 10 O 1.21730 * 120.00303 * 5.00721 * 9 8 2 11 11 N 1.34772 * 120.00014 * 185.01555 * 9 8 2 12 12 C 1.46503 * 120.00402 * 184.70772 * 11 9 8 13 13 C 1.52997 * 109.46692 * 296.37955 * 12 11 9 14 14 N 1.46497 * 109.47474 * 302.79534 * 13 12 11 15 15 C 1.36935 * 120.00340 * 185.04204 * 14 13 12 16 16 H 1.07998 * 119.99792 * 4.99185 * 15 14 13 17 17 C 1.38814 * 120.00251 * 184.99252 * 15 14 13 18 18 N 1.31615 * 120.00140 * 184.84106 * 17 15 14 19 19 Si 1.86801 * 119.99550 * 4.84301 * 17 15 14 20 20 H 1.48499 * 109.47369 * 94.60246 * 19 17 15 21 21 H 1.48508 * 109.46956 * 214.59825 * 19 17 15 22 22 H 1.48500 * 109.47511 * 334.59822 * 19 17 15 23 23 C 1.53002 * 109.46804 * 56.37909 * 12 11 9 24 24 C 1.53000 * 109.47175 * 60.00285 * 23 12 11 25 25 C 1.52994 * 109.47031 * 59.99931 * 24 23 12 26 26 C 1.52996 * 109.47351 * 299.99799 * 25 24 23 27 27 C 1.52995 * 109.47065 * 176.37731 * 12 11 9 28 28 H 1.09001 * 109.47577 * 60.00497 * 27 12 11 29 29 C 1.53001 * 109.46804 * 180.02562 * 27 12 11 30 30 H 1.09006 * 109.47176 * 264.28265 * 1 2 3 31 31 H 1.09000 * 109.47275 * 144.28458 * 1 2 3 32 32 H 1.08995 * 109.47815 * 24.28096 * 1 2 3 33 33 H 0.96702 * 114.00657 * 270.27330 * 5 4 3 34 34 H 0.97004 * 119.99802 * 4.69778 * 11 9 8 35 35 H 1.08997 * 109.47226 * 62.80114 * 13 12 11 36 36 H 1.09007 * 109.46859 * 182.79973 * 13 12 11 37 37 H 0.97010 * 119.99574 * 5.04137 * 14 13 12 38 38 H 0.97001 * 119.99706 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.46952 * 180.02562 * 23 12 11 40 40 H 1.09002 * 109.47078 * 300.00076 * 23 12 11 41 41 H 1.09002 * 109.46951 * 179.97438 * 24 23 12 42 42 H 1.09000 * 109.47104 * 299.99813 * 24 23 12 43 43 H 1.09000 * 109.47272 * 59.99985 * 25 24 23 44 44 H 1.09001 * 109.47143 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.47231 * 180.02562 * 26 25 24 46 46 H 1.09000 * 109.47085 * 300.00301 * 26 25 24 47 47 H 1.08996 * 109.47562 * 59.99822 * 29 27 12 48 48 H 1.09001 * 109.47203 * 180.02562 * 29 27 12 49 49 H 1.09002 * 109.47460 * 299.99906 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2903 1.0776 0.0000 4 6 3.5531 0.7094 0.0025 5 8 4.6149 1.5464 0.0061 6 7 3.6181 -0.6385 -0.0045 7 1 4.4243 -1.1779 -0.0080 8 6 2.3110 -1.1058 -0.0061 9 6 1.8792 -2.5044 -0.0134 10 8 0.6962 -2.7758 -0.1064 11 7 2.7915 -3.4918 0.0831 12 6 2.3712 -4.8909 -0.0277 13 6 1.4331 -5.2348 1.1310 14 7 2.1107 -4.9709 2.4028 15 6 1.5026 -5.3019 3.5842 16 1 0.5606 -5.8301 3.5772 17 6 2.0969 -4.9587 4.7908 18 7 1.5625 -5.3591 5.9250 19 14 3.6550 -3.9284 4.8047 20 1 3.2998 -2.4958 4.9687 21 1 4.5211 -4.3559 5.9327 22 1 4.3829 -4.1143 3.5237 23 6 1.6400 -5.1001 -1.3553 24 6 2.5782 -4.7561 -2.5140 25 6 3.8084 -5.6640 -2.4607 26 6 4.5397 -5.4548 -1.1332 27 6 3.6016 -5.7987 0.0255 28 1 4.1225 -5.6497 0.9713 29 6 3.1627 -7.2598 -0.0909 30 1 -0.3634 -0.1024 1.0226 31 1 -0.3634 -0.8344 -0.5999 32 1 -0.3634 0.9367 -0.4225 33 1 4.9233 1.7945 -0.8762 34 1 3.7264 -3.2761 0.2258 35 1 0.5339 -4.6225 1.0645 36 1 1.1599 -6.2887 1.0768 37 1 2.9902 -4.5615 2.4079 38 1 1.9777 -5.1189 6.7682 39 1 1.3269 -6.1409 -1.4375 40 1 0.7635 -4.4533 -1.3932 41 1 2.0573 -4.9056 -3.4598 42 1 2.8909 -3.7152 -2.4315 43 1 3.4957 -6.7049 -2.5432 44 1 4.4766 -5.4193 -3.2864 45 1 5.4165 -6.1013 -1.0955 46 1 4.8524 -4.4139 -1.0508 47 1 2.6420 -7.4086 -1.0368 48 1 4.0392 -7.9066 -0.0525 49 1 2.4942 -7.5052 0.7344 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698659270.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:47:22 Heat of formation + Delta-G solvation = -7.599608 kcal Electronic energy + Delta-G solvation = -31673.281509 eV Core-core repulsion = 27636.905414 eV Total energy + Delta-G solvation = -4036.376094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.39389 -40.68828 -38.25398 -37.49679 -34.93018 -33.97602 -32.99717 -32.02486 -31.44804 -30.69072 -29.98719 -27.41795 -26.38787 -25.24562 -23.23652 -22.75145 -22.29683 -21.32521 -20.61177 -19.96521 -19.46478 -18.45765 -17.91513 -17.71888 -16.56616 -16.13094 -15.52249 -15.37323 -15.01402 -14.68853 -14.44540 -14.31915 -13.76868 -13.69370 -13.40521 -13.24176 -13.01067 -12.80849 -12.62694 -12.62431 -12.48504 -12.21126 -12.07859 -11.93887 -11.84624 -11.61591 -11.36919 -11.06150 -10.98708 -10.82326 -10.52682 -10.41455 -10.23988 -10.20196 -10.05623 -9.96725 -9.59091 -9.47316 -8.87133 -8.77944 -8.43053 -7.14287 -5.74676 -3.07615 1.09611 2.20054 2.57420 3.15845 3.26157 3.36605 3.41496 3.41993 3.64491 4.56840 4.58194 4.63786 4.70309 4.74393 4.89175 5.07187 5.10938 5.13529 5.32654 5.37408 5.43851 5.50444 5.56970 5.62833 5.67038 5.71765 5.82926 5.86817 5.89707 5.95043 5.96991 6.00128 6.02478 6.07268 6.15117 6.25418 6.34510 6.37779 6.42388 6.46914 6.51428 6.54653 6.83723 6.96360 7.30428 7.53716 7.71688 8.04433 8.31409 8.44906 9.25056 9.97085 10.17998 11.44330 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008042 B = 0.005854 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.674399 B = 4782.229267 C = 6595.859512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.112 3.888 3 N -0.488 5.488 4 C 0.405 3.595 5 O -0.441 6.441 6 N -0.556 5.556 7 H 0.420 0.580 8 C -0.076 4.076 9 C 0.602 3.398 10 O -0.506 6.506 11 N -0.713 5.713 12 C 0.180 3.820 13 C 0.143 3.857 14 N -0.750 5.750 15 C -0.233 4.233 16 H 0.090 0.910 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.885 3.115 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.285 1.285 23 C -0.131 4.131 24 C -0.112 4.112 25 C -0.120 4.120 26 C -0.114 4.114 27 C -0.091 4.091 28 H 0.080 0.920 29 C -0.146 4.146 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.404 0.596 34 H 0.387 0.613 35 H 0.049 0.951 36 H 0.039 0.961 37 H 0.358 0.642 38 H 0.258 0.742 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.052 0.948 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.741 5.469 -21.105 23.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.023 4.023 3 N -0.219 5.219 4 C 0.103 3.897 5 O -0.241 6.241 6 N -0.175 5.175 7 H 0.259 0.741 8 C -0.191 4.191 9 C 0.388 3.612 10 O -0.381 6.381 11 N -0.364 5.364 12 C 0.095 3.905 13 C 0.016 3.984 14 N -0.396 5.396 15 C -0.363 4.363 16 H 0.108 0.892 17 C -0.192 4.192 18 N -0.582 5.582 19 Si 0.717 3.283 20 H -0.214 1.214 21 H -0.219 1.219 22 H -0.212 1.212 23 C -0.169 4.169 24 C -0.150 4.150 25 C -0.157 4.157 26 C -0.152 4.152 27 C -0.110 4.110 28 H 0.098 0.902 29 C -0.203 4.203 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.261 0.739 34 H 0.220 0.780 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.191 0.809 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.448 6.010 -20.419 22.241 hybrid contribution 2.924 0.030 -0.013 2.924 sum 9.372 6.040 -20.432 23.276 Atomic orbital electron populations 1.20332 0.85806 1.03424 1.03909 1.20945 0.96952 0.85813 0.98558 1.70270 0.98529 1.30457 1.22618 1.20155 0.87413 0.78668 1.03420 1.84865 1.43417 1.61632 1.34234 1.43698 1.08839 1.07875 1.57040 0.74133 1.21038 0.82697 0.95738 1.19583 1.16491 0.85986 0.81944 0.76776 1.90795 1.15739 1.82251 1.49352 1.45900 1.09913 1.06495 1.74077 1.20671 0.94977 0.78821 0.96041 1.21152 0.94633 0.98755 0.83878 1.42654 1.19172 1.76022 1.01749 1.19054 1.05112 1.29628 0.82501 0.89249 1.24652 0.98356 1.00929 0.95273 1.69696 1.41453 1.50396 0.96694 0.86550 0.84351 0.81248 0.76164 1.21440 1.21854 1.21159 1.21942 0.99417 1.02923 0.92644 1.21442 0.96083 0.99305 0.98153 1.21574 0.96962 1.00436 0.96742 1.21595 0.98062 1.00662 0.94879 1.21277 0.95027 0.95946 0.98774 0.90204 1.21921 1.01669 0.94111 1.02624 0.90151 0.88890 0.91078 0.73874 0.77991 0.93308 0.94317 0.80899 0.93189 0.90676 0.89362 0.92309 0.92642 0.91450 0.92666 0.91865 0.92904 0.92256 0.92829 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.78 36.00 0.35 -0.69 16 2 C 0.11 1.68 7.14 -82.54 -0.59 1.09 16 3 N -0.49 -7.23 11.22 -10.83 -0.12 -7.35 16 4 C 0.40 4.96 9.43 -89.59 -0.84 4.11 16 5 O -0.44 -4.04 13.62 -17.30 -0.24 -4.27 16 6 N -0.56 -6.26 6.12 -10.91 -0.07 -6.33 16 7 H 0.42 3.39 8.37 -40.82 -0.34 3.05 16 8 C -0.08 -1.09 7.07 -81.98 -0.58 -1.67 16 9 C 0.60 9.36 7.14 -12.99 -0.09 9.27 16 10 O -0.51 -9.05 11.15 5.16 0.06 -8.99 16 11 N -0.71 -9.86 3.46 -48.99 -0.17 -10.03 16 12 C 0.18 2.59 0.09 -131.82 -0.01 2.58 16 13 C 0.14 2.78 4.70 -4.05 -0.02 2.76 16 14 N -0.75 -17.43 4.90 -59.91 -0.29 -17.73 16 15 C -0.23 -6.61 10.47 -15.06 -0.16 -6.77 16 16 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 17 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 18 N -0.93 -29.68 13.97 55.49 0.78 -28.91 16 19 Si 0.89 22.50 28.01 -169.99 -4.76 17.73 16 20 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.28 -6.54 6.15 56.52 0.35 -6.19 16 23 C -0.13 -1.66 4.19 -26.73 -0.11 -1.77 16 24 C -0.11 -1.16 5.77 -26.73 -0.15 -1.31 16 25 C -0.12 -1.10 5.65 -26.74 -0.15 -1.25 16 26 C -0.11 -1.13 5.28 -26.73 -0.14 -1.27 16 27 C -0.09 -1.18 2.14 -90.62 -0.19 -1.37 16 28 H 0.08 1.21 7.15 -51.93 -0.37 0.84 16 29 C -0.15 -1.81 8.15 37.16 0.30 -1.51 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.09 1.27 6.67 -51.93 -0.35 0.92 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.40 1.33 9.06 45.56 0.41 1.75 16 34 H 0.39 4.57 6.74 -40.82 -0.28 4.29 16 35 H 0.05 1.07 6.35 -51.93 -0.33 0.74 16 36 H 0.04 0.76 6.28 -51.93 -0.33 0.43 16 37 H 0.36 8.09 4.28 -40.82 -0.17 7.91 16 38 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 39 H 0.07 0.90 6.43 -51.93 -0.33 0.57 16 40 H 0.09 1.30 6.07 -51.93 -0.32 0.98 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.60 7.57 -51.93 -0.39 0.21 16 43 H 0.07 0.61 6.43 -51.93 -0.33 0.28 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.48 6.94 -51.93 -0.36 0.12 16 47 H 0.06 0.64 4.81 -51.93 -0.25 0.39 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.07 1.08 6.37 -51.93 -0.33 0.75 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -35.90 370.02 -7.95 -43.84 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -6.22 Total: 14.26 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -2.49 Total: 2.20 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: 0.12 Total: -70.34 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.18 Total: -13.27 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.76 Total: 17.73 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.90 -7.95 -43.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698659270.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.241 kcal (2) G-P(sol) polarization free energy of solvation -35.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds