Wall clock time and date at job start Sat Apr 11 2020 04:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47278 * 2 1 4 4 N 1.34664 * 125.79740 * 265.13136 * 3 2 1 5 5 H 0.96999 * 124.85098 * 0.06657 * 4 3 2 6 6 C 1.36445 * 110.29596 * 180.29001 * 4 3 2 7 7 C 1.34489 * 108.85693 * 359.75363 * 6 4 3 8 8 C 1.36767 * 125.80504 * 84.99407 * 3 2 1 9 9 C 1.47260 * 126.94178 * 359.97438 * 8 3 2 10 10 O 1.21632 * 119.99938 * 359.71327 * 9 8 3 11 11 N 1.34775 * 120.00158 * 179.70385 * 9 8 3 12 12 C 1.46495 * 120.00077 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47155 * 180.02562 * 12 11 9 14 14 H 1.09007 * 109.46923 * 65.00206 * 13 12 11 15 15 C 1.52993 * 109.47538 * 185.00270 * 13 12 11 16 16 C 1.53004 * 109.47589 * 184.25924 * 15 13 12 17 17 N 1.46897 * 109.47081 * 305.00579 * 13 12 11 18 18 C 1.46906 * 111.00071 * 305.54264 * 17 13 12 19 19 C 1.50696 * 109.47168 * 183.46222 * 18 17 13 20 20 O 1.21287 * 120.00389 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99896 * 179.72474 * 19 18 17 22 22 C 1.37094 * 120.00076 * 179.97438 * 21 19 18 23 23 H 1.07996 * 120.00082 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99947 * 180.02562 * 22 21 19 25 25 N 1.31419 * 119.99931 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99939 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.46941 * 90.00720 * 26 24 22 28 28 H 1.48505 * 109.47067 * 210.00152 * 26 24 22 29 29 H 1.48496 * 109.47447 * 330.00283 * 26 24 22 30 30 H 1.08996 * 109.47259 * 300.00564 * 1 2 3 31 31 H 1.08999 * 109.46607 * 60.00290 * 1 2 3 32 32 H 1.08999 * 109.47268 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47259 * 239.99436 * 2 1 3 34 34 H 1.09008 * 109.47137 * 119.99085 * 2 1 3 35 35 H 1.08000 * 125.57276 * 179.76559 * 6 4 3 36 36 H 1.07994 * 126.83199 * 180.02562 * 7 6 4 37 37 H 0.97005 * 119.99383 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.47236 * 60.00581 * 12 11 9 39 39 H 1.08997 * 109.47325 * 300.00596 * 12 11 9 40 40 H 1.09008 * 109.47225 * 304.26062 * 15 13 12 41 41 H 1.09003 * 109.47327 * 64.25520 * 15 13 12 42 42 H 1.09001 * 109.46804 * 174.73220 * 16 15 13 43 43 H 1.08995 * 109.46997 * 294.73660 * 16 15 13 44 44 H 1.08998 * 109.46846 * 54.73714 * 16 15 13 45 45 H 1.00895 * 111.00401 * 69.50011 * 17 13 12 46 46 H 1.08995 * 109.46837 * 63.46295 * 18 17 13 47 47 H 1.08999 * 109.46857 * 303.46158 * 18 17 13 48 48 H 0.96996 * 119.99860 * 0.02562 * 21 19 18 49 49 H 0.97003 * 119.99568 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3824 2.1326 -1.0883 5 1 2.3476 1.8039 -2.0003 6 6 2.7976 3.3803 -0.7244 7 6 2.7153 3.4929 0.6132 8 6 2.2079 2.2075 1.1050 9 6 1.9461 1.8368 2.5059 10 8 1.5231 0.7280 2.7727 11 7 2.1753 2.7260 3.4924 12 6 1.9144 2.3574 4.8860 13 6 2.2546 3.5377 5.7981 14 1 1.5783 4.3663 5.5874 15 6 2.1015 3.1135 7.2600 16 6 2.3381 4.3212 8.1691 17 7 3.6396 3.9619 5.5538 18 6 4.5693 2.8340 5.7003 19 6 5.9841 3.3233 5.5268 20 8 6.1971 4.4962 5.3036 21 7 7.0131 2.4585 5.6257 22 6 8.3001 2.9035 5.4673 23 1 8.4894 3.9470 5.2638 24 6 9.3609 2.0118 5.5688 25 7 10.5947 2.4385 5.4175 26 14 9.0334 0.2069 5.9215 27 1 8.8649 -0.5252 4.6406 28 1 10.1792 -0.3665 6.6723 29 1 7.7960 0.0775 6.7322 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 3.1367 4.1516 -1.4001 36 1 2.9714 4.3578 1.2071 37 1 2.5125 3.6103 3.2795 38 1 2.5302 1.4996 5.1564 39 1 0.8617 2.1000 5.0028 40 1 1.0951 2.7277 7.4229 41 1 2.8302 2.3364 7.4911 42 1 2.1377 4.0420 9.2035 43 1 3.3732 4.6493 8.0753 44 1 1.6718 5.1325 7.8762 45 1 3.7316 4.3907 4.6451 46 1 4.3497 2.0815 4.9429 47 1 4.4554 2.3957 6.6917 48 1 6.8430 1.5211 5.8081 49 1 11.3352 1.8160 5.4887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267799607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:48:39 Heat of formation + Delta-G solvation = -33.359867 kcal Electronic energy + Delta-G solvation = -29554.536303 eV Core-core repulsion = 25517.043160 eV Total energy + Delta-G solvation = -4037.493143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.45411 -39.55126 -38.45862 -37.24036 -34.23203 -33.92594 -33.50859 -32.01660 -31.57967 -31.28008 -28.79668 -28.23800 -26.62991 -24.38306 -23.92631 -23.23006 -21.92328 -20.80018 -20.31287 -19.48819 -19.17232 -18.35426 -17.85161 -16.79149 -16.25705 -15.84968 -15.48505 -15.29479 -14.84109 -14.62025 -14.54091 -14.17316 -14.07813 -13.95095 -13.77711 -13.57419 -13.27024 -13.13685 -13.10463 -12.69623 -12.56986 -12.44834 -12.27287 -12.01764 -11.94572 -11.63636 -11.54799 -11.30348 -11.13895 -11.10084 -10.86360 -10.59833 -10.54353 -9.94107 -9.83517 -9.52684 -9.16188 -8.92930 -8.56849 -8.35312 -8.15479 -8.10281 -6.27712 -3.78592 1.64030 2.27890 2.87674 3.06700 3.10948 3.18416 3.34938 3.55119 3.79737 4.13013 4.17000 4.50443 4.66292 4.74991 4.79693 4.85595 5.00909 5.10517 5.13620 5.14260 5.25363 5.26706 5.34622 5.37991 5.50519 5.57238 5.65111 5.68771 5.75191 5.75545 5.80709 5.87034 5.95194 5.99571 6.02965 6.05921 6.07232 6.27573 6.43321 6.54018 6.58662 6.74965 7.08690 7.22465 7.52062 7.57133 7.62148 8.18532 8.34108 8.63973 8.99017 9.46907 9.87753 10.85497 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008453 B = 0.003513 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.459857 B = 7969.191275 C = 9688.313173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C 0.109 3.891 4 N -0.552 5.552 5 H 0.415 0.585 6 C -0.016 4.016 7 C -0.165 4.165 8 C -0.235 4.235 9 C 0.593 3.407 10 O -0.551 6.551 11 N -0.726 5.726 12 C 0.083 3.917 13 C 0.076 3.924 14 H 0.090 0.910 15 C -0.113 4.113 16 C -0.142 4.142 17 N -0.652 5.652 18 C 0.040 3.960 19 C 0.453 3.547 20 O -0.564 6.564 21 N -0.592 5.592 22 C -0.303 4.303 23 H 0.119 0.881 24 C 0.041 3.959 25 N -0.883 5.883 26 Si 0.878 3.122 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.269 1.269 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.170 0.830 36 H 0.146 0.854 37 H 0.398 0.602 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.049 0.951 45 H 0.346 0.654 46 H 0.049 0.951 47 H 0.090 0.910 48 H 0.370 0.630 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.289 -2.955 -9.672 24.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 C -0.009 4.009 4 N -0.147 5.147 5 H 0.251 0.749 6 C -0.143 4.143 7 C -0.189 4.189 8 C -0.245 4.245 9 C 0.382 3.618 10 O -0.430 6.430 11 N -0.378 5.378 12 C -0.043 4.043 13 C -0.035 4.035 14 H 0.108 0.892 15 C -0.151 4.151 16 C -0.199 4.199 17 N -0.284 5.284 18 C -0.092 4.092 19 C 0.238 3.762 20 O -0.446 6.446 21 N -0.231 5.231 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.523 5.523 26 Si 0.704 3.296 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.194 1.194 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.187 0.813 36 H 0.164 0.836 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.068 0.932 45 H 0.166 0.834 46 H 0.067 0.933 47 H 0.108 0.892 48 H 0.202 0.798 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.089 -2.750 -9.104 24.049 hybrid contribution 0.095 -1.598 -1.116 1.952 sum -21.994 -4.348 -10.220 24.639 Atomic orbital electron populations 1.21641 0.94053 1.01970 1.01991 1.20294 0.96649 0.89158 1.03989 1.20324 1.00170 0.94630 0.85786 1.41595 1.52193 1.12253 1.08701 0.74874 1.21738 1.07816 0.88117 0.96645 1.22077 1.05537 0.97441 0.93885 1.20093 1.16072 0.96211 0.92161 1.17318 0.76563 0.83876 0.84002 1.90729 1.46753 1.21253 1.84313 1.45728 1.68294 1.17376 1.06394 1.22139 1.01699 0.99555 0.80863 1.21989 0.90860 0.95616 0.95016 0.89240 1.21506 1.01382 0.99125 0.93119 1.21626 1.03414 0.97199 0.97702 1.60199 1.02223 1.28472 1.37464 1.21809 0.92328 0.93069 1.02012 1.19706 0.85581 0.86904 0.83966 1.90555 1.84886 1.16754 1.52434 1.42209 1.06784 1.09081 1.65053 1.19420 0.79526 0.98326 1.45886 0.86296 1.25023 0.94984 0.98390 0.97732 1.69627 0.98138 1.35400 1.49139 0.86697 0.78493 0.85328 0.79059 1.19692 1.20177 1.19446 0.91704 0.93467 0.92077 0.91549 0.87824 0.81265 0.83624 0.76669 0.91090 0.91264 0.91795 0.91562 0.93559 0.91013 0.93158 0.83416 0.93304 0.89235 0.79766 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.90 37.16 0.37 -0.86 16 2 C -0.06 -0.61 5.79 -27.88 -0.16 -0.77 16 3 C 0.11 1.19 6.43 -81.88 -0.53 0.66 16 4 N -0.55 -4.55 5.90 -9.10 -0.05 -4.61 16 5 H 0.41 2.04 8.96 -40.82 -0.37 1.68 16 6 C -0.02 -0.14 11.89 -16.82 -0.20 -0.34 16 7 C -0.17 -1.79 10.56 -37.50 -0.40 -2.19 16 8 C -0.24 -2.99 6.29 -103.35 -0.65 -3.64 16 9 C 0.59 8.37 7.81 -12.59 -0.10 8.27 16 10 O -0.55 -8.99 14.74 5.25 0.08 -8.91 16 11 N -0.73 -8.77 5.30 -61.44 -0.33 -9.10 16 12 C 0.08 0.96 4.47 -4.04 -0.02 0.94 16 13 C 0.08 0.83 2.71 -67.72 -0.18 0.65 16 14 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 15 C -0.11 -1.18 5.31 -26.73 -0.14 -1.33 16 16 C -0.14 -1.58 9.73 37.16 0.36 -1.22 16 17 N -0.65 -9.34 5.41 -107.99 -0.58 -9.93 16 18 C 0.04 0.67 5.30 -4.97 -0.03 0.64 16 19 C 0.45 10.29 7.83 -10.99 -0.09 10.21 16 20 O -0.56 -14.98 15.85 5.55 0.09 -14.89 16 21 N -0.59 -14.35 5.09 -10.97 -0.06 -14.40 16 22 C -0.30 -8.67 10.16 -14.94 -0.15 -8.82 16 23 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 24 C 0.04 1.15 5.50 -17.46 -0.10 1.06 16 25 N -0.88 -26.09 13.96 55.50 0.77 -25.31 16 26 Si 0.88 19.89 27.73 -169.99 -4.71 15.17 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.27 -5.60 6.52 56.52 0.37 -5.23 16 30 H 0.06 0.71 7.95 -51.93 -0.41 0.30 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 1.24 6.76 -51.92 -0.35 0.89 16 35 H 0.17 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.15 1.38 7.69 -52.49 -0.40 0.98 16 37 H 0.40 4.33 6.36 -40.82 -0.26 4.07 16 38 H 0.07 0.93 6.72 -51.93 -0.35 0.58 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.07 0.74 6.28 -51.93 -0.33 0.42 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.99 7.88 -51.93 -0.41 0.58 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.35 5.02 7.29 -39.29 -0.29 4.73 16 46 H 0.05 0.78 6.49 -51.93 -0.34 0.44 16 47 H 0.09 1.37 6.22 -51.93 -0.32 1.05 16 48 H 0.37 8.03 5.76 -40.82 -0.24 7.80 16 49 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -35.45 397.64 -8.23 -43.68 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -7.42 Total: 19.03 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -2.01 Total: 3.27 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -0.25 Total: -63.35 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.17 Total: -23.80 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.71 Total: 15.17 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.45 -8.23 -43.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267799607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.322 kcal (2) G-P(sol) polarization free energy of solvation -35.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds