Wall clock time and date at job start Sat Apr 11 2020 04:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47092 * 2 1 4 4 C 1.50696 * 109.47649 * 120.00322 * 2 1 3 5 5 N 1.34664 * 125.79840 * 300.13771 * 4 2 1 6 6 H 0.96992 * 124.85600 * 0.05428 * 5 4 2 7 7 C 1.36448 * 110.29566 * 180.29276 * 5 4 2 8 8 C 1.34493 * 108.85812 * 359.74434 * 7 5 4 9 9 C 1.36768 * 125.80410 * 119.99625 * 4 2 1 10 10 C 1.47263 * 126.93909 * 359.97438 * 9 4 2 11 11 O 1.21623 * 120.00126 * 359.70796 * 10 9 4 12 12 N 1.34777 * 119.99630 * 179.70482 * 10 9 4 13 13 C 1.46499 * 119.99665 * 179.72408 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 N 1.46898 * 109.46947 * 180.02562 * 14 13 12 16 16 C 1.46894 * 111.00387 * 66.04765 * 15 14 13 17 17 C 1.46906 * 110.99589 * 190.00154 * 15 14 13 18 18 C 1.50704 * 109.46950 * 170.00089 * 17 15 14 19 19 O 1.21292 * 120.00070 * 359.97438 * 18 17 15 20 20 N 1.34774 * 119.99609 * 179.97438 * 18 17 15 21 21 C 1.37101 * 119.99744 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00215 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99832 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00005 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99640 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47572 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46704 * 120.00418 * 25 23 21 28 28 H 1.48498 * 109.47199 * 240.00381 * 25 23 21 29 29 H 1.09009 * 109.46729 * 299.99655 * 1 2 3 30 30 H 1.08997 * 109.47336 * 59.99591 * 1 2 3 31 31 H 1.08998 * 109.47292 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47034 * 240.00891 * 2 1 3 33 33 H 1.09003 * 109.47486 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47364 * 300.00392 * 3 2 1 35 35 H 1.09009 * 109.47052 * 60.00543 * 3 2 1 36 36 H 1.08002 * 125.57355 * 179.72678 * 7 5 4 37 37 H 1.07994 * 126.83369 * 180.02562 * 8 7 5 38 38 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 39 39 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 40 40 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 41 41 H 1.08995 * 109.46638 * 300.00121 * 14 13 12 42 42 H 1.09006 * 109.47139 * 60.00254 * 14 13 12 43 43 H 1.09006 * 109.47151 * 59.99589 * 16 15 14 44 44 H 1.09000 * 109.47496 * 179.97438 * 16 15 14 45 45 H 1.08997 * 109.47031 * 299.99782 * 16 15 14 46 46 H 1.09007 * 109.46952 * 289.99615 * 17 15 14 47 47 H 1.08995 * 109.47632 * 49.99732 * 17 15 14 48 48 H 0.97000 * 120.00714 * 0.02562 * 20 18 17 49 49 H 0.97003 * 119.99431 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 1.7781 -0.3552 2.5041 6 1 1.2371 0.4046 2.7702 7 6 2.3944 -1.2139 3.3670 8 6 3.0551 -2.1449 2.6561 9 6 2.8220 -1.8271 1.2431 10 6 3.3388 -2.5590 0.0744 11 8 3.0650 -2.1820 -1.0491 12 7 4.1153 -3.6466 0.2497 13 6 4.6244 -4.3782 -0.9129 14 6 5.4661 -5.5652 -0.4400 15 7 5.9771 -6.2984 -1.6058 16 6 6.9273 -5.4781 -2.3687 17 6 6.5877 -7.5716 -1.2006 18 6 6.8765 -8.4022 -2.4246 19 8 6.6004 -7.9757 -3.5259 20 7 7.4416 -9.6189 -2.2952 21 6 7.7039 -10.3747 -3.4086 22 1 7.4580 -9.9950 -4.3893 23 6 8.2870 -11.6289 -3.2753 24 7 8.5866 -12.0908 -2.0821 25 14 8.6449 -12.6584 -4.7924 26 1 8.2168 -11.9173 -6.0060 27 1 10.1018 -12.9352 -4.8702 28 1 7.9012 -13.9409 -4.7071 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9564 0.8901 36 1 2.3580 -1.1553 4.4449 37 1 3.6404 -2.9637 3.0475 38 1 4.3335 -3.9474 1.1457 39 1 3.7871 -4.7412 -1.5090 40 1 5.2409 -3.7141 -1.5187 41 1 6.3034 -5.2022 0.1561 42 1 4.8497 -6.2294 0.1658 43 1 7.7682 -5.2074 -1.7300 44 1 7.2904 -6.0451 -3.2259 45 1 6.4289 -4.5731 -2.7160 46 1 7.5178 -7.3750 -0.6672 47 1 5.9020 -8.1122 -0.5482 48 1 7.6621 -9.9602 -1.4145 49 1 8.9933 -12.9665 -1.9891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663257779.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:43 Heat of formation + Delta-G solvation = -31.050672 kcal Electronic energy + Delta-G solvation = -28072.512114 eV Core-core repulsion = 24035.119105 eV Total energy + Delta-G solvation = -4037.393009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.66731 -39.24891 -38.53634 -36.70198 -35.58395 -34.41203 -33.75227 -31.52132 -31.21148 -29.35683 -28.76945 -27.62225 -27.54281 -25.38896 -24.16799 -22.74917 -22.02140 -21.19008 -20.62981 -19.58367 -19.12633 -17.84690 -17.81434 -16.28520 -16.15251 -15.84443 -15.68832 -15.11328 -14.94598 -14.68663 -14.60141 -14.50399 -14.38498 -13.82654 -13.72376 -13.50962 -13.39405 -13.25991 -13.15413 -12.87622 -12.84725 -12.60053 -12.08370 -11.76615 -11.55219 -11.51493 -11.46322 -11.34421 -11.22826 -11.19682 -10.97465 -10.90919 -10.31630 -10.19735 -9.80050 -9.45915 -9.22916 -8.97493 -8.49345 -8.43164 -7.95278 -7.84021 -6.39199 -3.79648 1.53767 2.12026 2.75384 3.18603 3.25043 3.29292 3.36969 3.47310 3.93705 4.12549 4.27718 4.34090 4.53924 4.66645 4.79221 4.83810 4.98478 5.06971 5.10074 5.11462 5.16740 5.19428 5.28054 5.40711 5.42072 5.48537 5.51251 5.65378 5.69623 5.74816 5.75940 5.86584 5.93821 5.95864 5.99411 6.05315 6.11602 6.31111 6.40571 6.49219 6.61346 6.63974 7.08739 7.26289 7.38561 7.56138 7.58340 8.09741 8.30942 8.64958 9.21312 9.57569 10.09607 10.78701 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.029576 B = 0.001642 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.497036 B =17044.903102 C =17570.580871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C -0.144 4.144 4 C 0.119 3.881 5 N -0.551 5.551 6 H 0.414 0.586 7 C -0.018 4.018 8 C -0.168 4.168 9 C -0.235 4.235 10 C 0.591 3.409 11 O -0.549 6.549 12 N -0.725 5.725 13 C 0.124 3.876 14 C 0.045 3.955 15 N -0.515 5.515 16 C 0.018 3.982 17 C 0.047 3.953 18 C 0.444 3.556 19 O -0.576 6.576 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.128 0.872 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.169 0.831 37 H 0.145 0.855 38 H 0.398 0.602 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.036 0.964 42 H 0.078 0.922 43 H 0.015 0.985 44 H 0.097 0.903 45 H 0.063 0.937 46 H 0.048 0.952 47 H 0.089 0.911 48 H 0.392 0.608 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.558 24.564 15.447 31.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.201 4.201 4 C 0.001 3.999 5 N -0.145 5.145 6 H 0.250 0.750 7 C -0.145 4.145 8 C -0.192 4.192 9 C -0.244 4.244 10 C 0.380 3.620 11 O -0.429 6.429 12 N -0.376 5.376 13 C 0.000 4.000 14 C -0.084 4.084 15 N -0.239 5.239 16 C -0.129 4.129 17 C -0.084 4.084 18 C 0.230 3.770 19 O -0.459 6.459 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.146 0.854 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.186 0.814 37 H 0.163 0.837 38 H 0.232 0.768 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.097 0.903 43 H 0.033 0.967 44 H 0.116 0.884 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.107 0.893 48 H 0.225 0.775 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.293 24.894 13.692 31.367 hybrid contribution 0.974 -0.569 1.327 1.741 sum -12.319 24.325 15.018 31.129 Atomic orbital electron populations 1.21830 0.94235 1.02373 1.01695 1.20278 0.95763 0.95890 0.95366 1.21830 1.01715 0.94859 1.01705 1.20279 0.98420 0.95754 0.85489 1.41540 1.41725 1.25842 1.05432 0.74952 1.21714 1.02374 0.94584 0.95808 1.22031 1.04516 1.01304 0.91390 1.20131 1.10112 1.01129 0.93071 1.17302 0.77445 0.79514 0.87719 1.90700 1.59433 1.67637 1.25103 1.45692 1.52459 1.29359 1.10058 1.21302 0.98525 0.92529 0.87619 1.22256 0.98009 0.95278 0.92887 1.61439 1.38301 1.03549 1.20623 1.22623 0.93156 0.97779 0.99383 1.21871 0.98419 0.90990 0.97163 1.19723 0.83924 0.83392 0.89981 1.90494 1.56556 1.71750 1.27144 1.41870 1.53934 1.14524 1.09897 1.19758 1.37069 0.97421 0.88419 0.87834 1.25257 0.97260 0.97465 0.98038 1.69622 1.43114 1.19694 1.21988 0.85803 0.77884 0.79371 0.81303 1.19211 1.20826 1.20780 0.93479 0.91616 0.92100 0.85444 0.92164 0.91619 0.93472 0.81410 0.83736 0.76799 0.90318 0.91244 0.94612 0.90320 0.96673 0.88442 0.91792 0.93377 0.89322 0.77514 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.18 37.16 0.34 -0.64 16 2 C -0.05 -0.46 3.24 -91.77 -0.30 -0.76 16 3 C -0.14 -0.97 9.18 37.16 0.34 -0.63 16 4 C 0.12 1.07 5.68 -81.88 -0.47 0.61 16 5 N -0.55 -3.35 5.90 -9.10 -0.05 -3.40 16 6 H 0.41 1.34 8.96 -40.82 -0.37 0.98 16 7 C -0.02 -0.11 11.89 -16.82 -0.20 -0.31 16 8 C -0.17 -1.33 10.56 -37.49 -0.40 -1.73 16 9 C -0.23 -2.50 6.29 -103.35 -0.65 -3.15 16 10 C 0.59 7.70 7.81 -12.59 -0.10 7.60 16 11 O -0.55 -8.83 14.47 5.26 0.08 -8.76 16 12 N -0.72 -8.07 5.55 -61.43 -0.34 -8.41 16 13 C 0.12 1.60 5.60 -4.04 -0.02 1.58 16 14 C 0.04 0.56 5.07 -3.82 -0.02 0.54 16 15 N -0.51 -8.67 4.50 -244.36 -1.10 -9.77 16 16 C 0.02 0.31 8.96 60.06 0.54 0.84 16 17 C 0.05 0.84 5.45 -4.97 -0.03 0.81 16 18 C 0.44 10.53 7.47 -10.98 -0.08 10.45 16 19 O -0.58 -15.61 13.91 5.55 0.08 -15.53 16 20 N -0.57 -14.36 5.29 -10.96 -0.06 -14.42 16 21 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 25 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H 0.05 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.13 1.48 5.50 -51.93 -0.29 1.19 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.24 8.14 -51.92 -0.42 -0.19 16 36 H 0.17 0.49 8.06 -52.49 -0.42 0.06 16 37 H 0.14 0.86 7.69 -52.49 -0.40 0.45 16 38 H 0.40 3.35 7.60 -40.82 -0.31 3.04 16 39 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 40 H 0.07 0.97 6.55 -51.93 -0.34 0.63 16 41 H 0.04 0.41 8.12 -51.93 -0.42 -0.02 16 42 H 0.08 0.90 7.93 -51.93 -0.41 0.48 16 43 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.10 1.97 5.82 -51.93 -0.30 1.66 16 45 H 0.06 0.97 6.47 -51.93 -0.34 0.63 16 46 H 0.05 0.78 8.12 -51.92 -0.42 0.36 16 47 H 0.09 1.41 7.93 -51.93 -0.41 1.00 16 48 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 49 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 402.37 15.07 6.06 6.06 Total: -1.00 -34.57 402.37 -8.56 -43.13 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -7.65 Total: 11.59 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -1.28 Total: 7.23 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.83 Total: -59.88 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: 0.15 Total: -24.29 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.57 -8.56 -43.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663257779.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.082 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds