Wall clock time and date at job start Sat Apr 11 2020 04:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47092 * 2 1 4 4 C 1.50696 * 109.47649 * 120.00322 * 2 1 3 5 5 N 1.34664 * 125.79840 * 300.13771 * 4 2 1 6 6 H 0.96992 * 124.85600 * 0.05428 * 5 4 2 7 7 C 1.36448 * 110.29566 * 180.29276 * 5 4 2 8 8 C 1.34493 * 108.85812 * 359.74434 * 7 5 4 9 9 C 1.36768 * 125.80410 * 119.99625 * 4 2 1 10 10 C 1.47263 * 126.93909 * 359.97438 * 9 4 2 11 11 O 1.21623 * 120.00126 * 359.70796 * 10 9 4 12 12 N 1.34777 * 119.99630 * 179.70482 * 10 9 4 13 13 C 1.46499 * 119.99665 * 179.72408 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 N 1.46898 * 109.46947 * 180.02562 * 14 13 12 16 16 C 1.46894 * 111.00387 * 66.04765 * 15 14 13 17 17 C 1.46906 * 110.99589 * 190.00154 * 15 14 13 18 18 C 1.50704 * 109.46950 * 170.00089 * 17 15 14 19 19 O 1.21292 * 120.00070 * 359.97438 * 18 17 15 20 20 N 1.34774 * 119.99609 * 179.97438 * 18 17 15 21 21 C 1.37101 * 119.99744 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00215 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99832 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00005 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99640 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47572 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46704 * 120.00418 * 25 23 21 28 28 H 1.48498 * 109.47199 * 240.00381 * 25 23 21 29 29 H 1.09009 * 109.46729 * 299.99655 * 1 2 3 30 30 H 1.08997 * 109.47336 * 59.99591 * 1 2 3 31 31 H 1.08998 * 109.47292 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47034 * 240.00891 * 2 1 3 33 33 H 1.09003 * 109.47486 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47364 * 300.00392 * 3 2 1 35 35 H 1.09009 * 109.47052 * 60.00543 * 3 2 1 36 36 H 1.08002 * 125.57355 * 179.72678 * 7 5 4 37 37 H 1.07994 * 126.83369 * 180.02562 * 8 7 5 38 38 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 39 39 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 40 40 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 41 41 H 1.08995 * 109.46638 * 300.00121 * 14 13 12 42 42 H 1.09006 * 109.47139 * 60.00254 * 14 13 12 43 43 H 1.09006 * 109.47151 * 59.99589 * 16 15 14 44 44 H 1.09000 * 109.47496 * 179.97438 * 16 15 14 45 45 H 1.08997 * 109.47031 * 299.99782 * 16 15 14 46 46 H 1.09007 * 109.46952 * 289.99615 * 17 15 14 47 47 H 1.08995 * 109.47632 * 49.99732 * 17 15 14 48 48 H 0.97000 * 120.00714 * 0.02562 * 20 18 17 49 49 H 0.97003 * 119.99431 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 1.7781 -0.3552 2.5041 6 1 1.2371 0.4046 2.7702 7 6 2.3944 -1.2139 3.3670 8 6 3.0551 -2.1449 2.6561 9 6 2.8220 -1.8271 1.2431 10 6 3.3388 -2.5590 0.0744 11 8 3.0650 -2.1820 -1.0491 12 7 4.1153 -3.6466 0.2497 13 6 4.6244 -4.3782 -0.9129 14 6 5.4661 -5.5652 -0.4400 15 7 5.9771 -6.2984 -1.6058 16 6 6.9273 -5.4781 -2.3687 17 6 6.5877 -7.5716 -1.2006 18 6 6.8765 -8.4022 -2.4246 19 8 6.6004 -7.9757 -3.5259 20 7 7.4416 -9.6189 -2.2952 21 6 7.7039 -10.3747 -3.4086 22 1 7.4580 -9.9950 -4.3893 23 6 8.2870 -11.6289 -3.2753 24 7 8.5866 -12.0908 -2.0821 25 14 8.6449 -12.6584 -4.7924 26 1 8.2168 -11.9173 -6.0060 27 1 10.1018 -12.9352 -4.8702 28 1 7.9012 -13.9409 -4.7071 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9564 0.8901 36 1 2.3580 -1.1553 4.4449 37 1 3.6404 -2.9637 3.0475 38 1 4.3335 -3.9474 1.1457 39 1 3.7871 -4.7412 -1.5090 40 1 5.2409 -3.7141 -1.5187 41 1 6.3034 -5.2022 0.1561 42 1 4.8497 -6.2294 0.1658 43 1 7.7682 -5.2074 -1.7300 44 1 7.2904 -6.0451 -3.2259 45 1 6.4289 -4.5731 -2.7160 46 1 7.5178 -7.3750 -0.6672 47 1 5.9020 -8.1122 -0.5482 48 1 7.6621 -9.9602 -1.4145 49 1 8.9933 -12.9665 -1.9891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663257779.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:46:42 Heat of formation + Delta-G solvation = -57.687864 kcal Electronic energy + Delta-G solvation = -28073.667189 eV Core-core repulsion = 24035.119105 eV Total energy + Delta-G solvation = -4038.548084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.26849 -40.47168 -40.03490 -38.12091 -36.25900 -35.91713 -35.31035 -33.26193 -32.22677 -30.44987 -29.43546 -29.00041 -28.08095 -27.03198 -25.61850 -23.70509 -22.65088 -22.32098 -21.24081 -20.96627 -20.45238 -19.83801 -18.45166 -17.77894 -17.21888 -16.91348 -16.84372 -16.51617 -16.23386 -15.98179 -15.64006 -15.52179 -15.22431 -15.06918 -14.99408 -14.97204 -14.28977 -14.21551 -13.98619 -13.77453 -13.76966 -13.46385 -13.43307 -13.08491 -13.02664 -12.89645 -12.56205 -12.53673 -12.38091 -12.14681 -12.13620 -12.09482 -12.06189 -11.83737 -11.45010 -10.77778 -10.27397 -10.13073 -9.97610 -9.68666 -9.22534 -9.09646 -8.44931 -5.92980 0.77216 1.37471 1.42652 1.56717 1.59654 2.03202 2.08182 2.30770 2.48302 2.60204 2.99664 3.22195 3.44994 3.70761 3.85032 3.96549 4.07146 4.12347 4.20325 4.27387 4.35166 4.38868 4.48276 4.50161 4.54558 4.56545 4.65245 4.65858 4.68926 4.82566 4.88273 4.89504 4.97312 5.00107 5.11398 5.18249 5.21981 5.31099 5.38207 5.43501 5.54391 5.83530 5.87152 6.03637 6.06642 6.18066 6.62413 6.63623 6.74328 7.15780 7.38567 7.59392 8.15953 8.72687 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.029576 B = 0.001642 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.497036 B =17044.903102 C =17570.580871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.056 4.056 3 C -0.138 4.138 4 C 0.112 3.888 5 N -0.537 5.537 6 H 0.430 0.570 7 C -0.002 4.002 8 C -0.184 4.184 9 C -0.270 4.270 10 C 0.582 3.418 11 O -0.592 6.592 12 N -0.712 5.712 13 C 0.133 3.867 14 C 0.054 3.946 15 N -0.539 5.539 16 C 0.025 3.975 17 C 0.060 3.940 18 C 0.440 3.560 19 O -0.616 6.616 20 N -0.574 5.574 21 C -0.331 4.331 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.275 1.275 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.207 0.793 37 H 0.162 0.838 38 H 0.414 0.586 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.035 0.965 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.115 0.885 48 H 0.397 0.603 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.974 25.408 18.649 34.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.075 4.075 3 C -0.196 4.196 4 C -0.008 4.008 5 N -0.132 5.132 6 H 0.269 0.731 7 C -0.129 4.129 8 C -0.208 4.208 9 C -0.280 4.280 10 C 0.373 3.627 11 O -0.475 6.475 12 N -0.364 5.364 13 C 0.009 3.991 14 C -0.073 4.073 15 N -0.264 5.264 16 C -0.123 4.123 17 C -0.071 4.071 18 C 0.228 3.772 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.461 4.461 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.200 1.200 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.224 0.776 37 H 0.180 0.820 38 H 0.250 0.750 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.133 0.867 48 H 0.231 0.769 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.708 25.744 16.972 33.745 hybrid contribution 1.054 -0.747 0.365 1.343 sum -12.654 24.996 17.336 32.947 Atomic orbital electron populations 1.21792 0.92908 1.01737 1.03179 1.20180 0.96842 0.96506 0.94022 1.21789 1.00714 0.93877 1.03173 1.20302 0.98246 0.95541 0.86686 1.41541 1.41240 1.26145 1.04314 0.73076 1.22322 1.00283 0.93061 0.97275 1.22301 1.05716 1.02772 0.89988 1.20180 1.11943 1.02313 0.93569 1.17824 0.77137 0.79682 0.88047 1.90680 1.61048 1.68843 1.26940 1.45515 1.51866 1.28708 1.10282 1.21048 0.97445 0.92607 0.88026 1.22230 0.98719 0.94856 0.91542 1.61327 1.38425 1.03790 1.22864 1.22460 0.94009 0.97328 0.98497 1.21745 1.00383 0.90727 0.94228 1.20822 0.81968 0.82996 0.91462 1.90476 1.57650 1.72507 1.29543 1.41924 1.54706 1.15165 1.09425 1.19682 1.39169 0.98826 0.88408 0.90477 1.26004 0.96426 0.97864 1.00965 1.69674 1.42948 1.20215 1.23276 0.84889 0.78218 0.77778 0.77550 1.19995 1.19588 1.19622 0.91053 0.91062 0.93753 0.89171 0.93660 0.91066 0.91072 0.77608 0.82041 0.74966 0.92882 0.92602 0.92119 0.88390 0.94654 0.92458 0.90975 0.90888 0.86720 0.76937 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.18 71.98 0.66 -1.15 16 2 C -0.06 -0.97 3.24 -11.54 -0.04 -1.01 16 3 C -0.14 -1.76 9.18 71.98 0.66 -1.10 16 4 C 0.11 1.94 5.68 41.78 0.24 2.18 16 5 N -0.54 -5.06 5.90 -182.72 -1.08 -6.14 16 6 H 0.43 1.28 8.96 -92.71 -0.83 0.44 16 7 C 0.00 -0.02 11.89 83.12 0.99 0.97 16 8 C -0.18 -2.50 10.56 23.62 0.25 -2.25 16 9 C -0.27 -5.66 6.29 -19.04 -0.12 -5.78 16 10 C 0.58 15.67 7.81 86.62 0.68 16.35 16 11 O -0.59 -20.48 14.47 -4.10 -0.06 -20.54 16 12 N -0.71 -15.62 5.55 -466.51 -2.59 -18.21 16 13 C 0.13 3.45 5.60 86.38 0.48 3.94 16 14 C 0.05 1.26 5.07 86.30 0.44 1.70 16 15 N -0.54 -17.70 4.50 -927.03 -4.17 -21.87 16 16 C 0.02 0.84 8.96 127.69 1.14 1.98 16 17 C 0.06 2.05 5.45 85.56 0.47 2.52 16 18 C 0.44 21.16 7.47 87.66 0.66 21.81 16 19 O -0.62 -34.69 13.91 -3.07 -0.04 -34.73 16 20 N -0.57 -29.64 5.29 -306.98 -1.62 -31.26 16 21 C -0.33 -19.02 9.68 84.04 0.81 -18.20 16 22 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -49.74 13.05 21.66 0.28 -49.46 16 25 Si 0.99 43.49 29.55 68.60 2.03 45.51 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 28 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 29 H 0.07 0.56 8.14 -2.38 -0.02 0.55 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 2.29 5.50 -2.39 -0.01 2.28 16 33 H 0.04 0.70 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.21 0.13 8.06 -2.91 -0.02 0.11 16 37 H 0.16 1.46 7.69 -2.91 -0.02 1.44 16 38 H 0.41 6.29 7.60 -92.71 -0.70 5.59 16 39 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.06 1.60 6.55 -2.39 -0.02 1.58 16 41 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 42 H 0.10 1.93 7.93 -2.38 -0.02 1.91 16 43 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.06 2.40 5.82 -2.39 -0.01 2.38 16 45 H 0.07 2.24 6.47 -2.39 -0.02 2.23 16 46 H 0.07 2.17 8.12 -2.38 -0.02 2.15 16 47 H 0.11 3.35 7.93 -2.39 -0.02 3.33 16 48 H 0.40 19.26 7.90 -92.71 -0.73 18.53 16 49 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -79.35 402.37 -0.75 -80.09 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -1.27 Total: 34.88 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 7.78 Total: 21.72 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -9.18 Total: -126.94 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -0.10 Total: -55.27 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -79.35 -0.75 -80.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663257779.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.403 kcal (2) G-P(sol) polarization free energy of solvation -79.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds