Wall clock time and date at job start Sat Apr 11 2020 04:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47191 * 2 1 4 4 H 1.08998 * 109.50092 * 304.93679 * 3 2 1 5 5 C 1.53198 * 109.49504 * 65.00186 * 3 2 1 6 6 N 1.46932 * 108.77202 * 174.58532 * 5 3 2 7 7 C 1.34776 * 120.62513 * 126.37125 * 6 5 3 8 8 O 1.21695 * 120.00353 * 354.93414 * 7 6 5 9 9 C 1.46662 * 119.99519 * 174.93420 * 7 6 5 10 10 C 1.35145 * 126.37974 * 274.98002 * 9 7 6 11 11 N 1.37013 * 107.87432 * 179.87990 * 10 9 7 12 12 C 1.46504 * 125.64987 * 180.15238 * 11 10 9 13 13 C 1.34612 * 108.70017 * 0.39319 * 11 10 9 14 14 O 1.21737 * 125.73017 * 179.73433 * 13 11 10 15 15 N 1.34755 * 108.54616 * 359.76003 * 13 11 10 16 16 C 1.46505 * 126.18298 * 179.97438 * 15 13 11 17 17 C 1.46916 * 118.73944 * 306.38697 * 6 5 3 18 18 C 1.53194 * 108.77607 * 53.61317 * 17 6 5 19 19 C 1.53038 * 109.31134 * 305.36314 * 18 17 6 20 20 H 1.09007 * 109.45797 * 181.38841 * 19 18 17 21 21 N 1.46504 * 109.45940 * 301.34313 * 19 18 17 22 22 C 1.36935 * 119.99951 * 274.99786 * 21 19 18 23 23 H 1.08003 * 119.99940 * 0.02562 * 22 21 19 24 24 C 1.38815 * 119.99782 * 179.97438 * 22 21 19 25 25 N 1.31616 * 120.00026 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99724 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47317 * 0.02562 * 26 24 22 28 28 H 1.48508 * 109.46833 * 120.00116 * 26 24 22 29 29 H 1.48498 * 109.46846 * 239.99797 * 26 24 22 30 30 H 1.09004 * 109.47551 * 299.99786 * 1 2 3 31 31 H 1.08998 * 109.47606 * 60.00011 * 1 2 3 32 32 H 1.09008 * 109.47380 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47313 * 239.99717 * 2 1 3 34 34 H 1.09004 * 109.47266 * 120.00298 * 2 1 3 35 35 H 1.08996 * 109.58734 * 54.80125 * 5 3 2 36 36 H 1.09001 * 109.70158 * 294.44053 * 5 3 2 37 37 H 1.08002 * 126.06141 * 0.03161 * 10 9 7 38 38 H 1.08996 * 109.47423 * 180.30407 * 12 11 10 39 39 H 1.08999 * 109.47470 * 300.30964 * 12 11 10 40 40 H 1.09000 * 109.46991 * 60.31014 * 12 11 10 41 41 H 1.09002 * 109.47242 * 270.00139 * 16 15 13 42 42 H 1.08993 * 109.47015 * 30.00426 * 16 15 13 43 43 H 1.08999 * 109.47022 * 150.00070 * 16 15 13 44 44 H 1.08996 * 109.59478 * 293.82452 * 17 6 5 45 45 H 1.09000 * 109.58783 * 173.39514 * 17 6 5 46 46 H 1.09002 * 109.50022 * 65.31439 * 18 17 6 47 47 H 1.09005 * 109.49852 * 185.41173 * 18 17 6 48 48 H 0.96994 * 119.99622 * 95.00354 * 21 19 18 49 49 H 0.97002 * 119.99844 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6350 2.1279 1.3089 6 7 2.2415 3.4655 1.3494 7 6 1.4815 4.5579 1.5630 8 8 0.2710 4.4528 1.6326 9 6 2.1132 5.8731 1.7116 10 6 2.6186 6.3955 2.8509 11 7 3.1167 7.6380 2.5591 12 6 3.7581 8.5464 3.5129 13 6 2.9143 7.8880 1.2520 14 8 3.2330 8.9060 0.6652 15 7 2.2993 6.8226 0.7020 16 6 1.8976 6.6843 -0.7001 17 6 3.6921 3.5897 1.1524 18 6 4.0740 2.8879 -0.1547 19 6 3.5655 1.4448 -0.1216 20 1 3.8574 0.9358 -1.0403 21 7 4.1480 0.7483 1.0282 22 6 5.3854 0.1713 0.9241 23 1 5.9322 0.2300 -0.0054 24 6 5.9375 -0.4882 2.0138 25 7 5.2713 -0.5593 3.1467 26 14 7.6259 -1.2748 1.8721 27 1 8.1612 -1.0550 0.5044 28 1 8.5427 -0.6615 2.8665 29 1 7.5163 -2.7325 2.1330 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.9907 1.5396 2.1547 36 1 0.5497 2.2171 1.3564 37 1 2.6301 5.9172 3.8192 38 1 4.0494 9.4638 3.0014 39 1 3.0592 8.7838 4.3149 40 1 4.6430 8.0675 3.9320 41 1 0.8836 7.0637 -0.8267 42 1 2.5800 7.2534 -1.3313 43 1 1.9304 5.6328 -0.9854 44 1 4.2156 3.1207 1.9854 45 1 3.9641 4.6436 1.0941 46 1 3.6219 3.4138 -0.9956 47 1 5.1585 2.8890 -0.2649 48 1 3.6570 0.6959 1.8630 49 1 5.6573 -1.0198 3.9082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037974591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:47:07 Heat of formation + Delta-G solvation = 0.401437 kcal Electronic energy + Delta-G solvation = -31002.007993 eV Core-core repulsion = 26965.978850 eV Total energy + Delta-G solvation = -4036.029143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.52754 -40.01283 -37.91568 -36.80778 -35.54449 -34.49839 -33.80734 -31.78430 -30.79053 -29.54055 -28.93994 -27.85259 -26.29311 -25.18831 -23.90244 -23.59152 -22.73391 -20.92641 -20.81256 -19.83196 -18.58267 -17.59480 -17.38193 -17.00067 -16.51868 -16.04029 -15.55080 -15.28198 -14.88678 -14.59730 -14.38031 -14.27193 -14.03917 -14.02112 -13.73298 -13.33485 -13.19469 -13.11315 -13.00819 -12.70891 -12.60712 -12.48526 -12.29330 -11.91685 -11.57039 -11.47736 -11.14954 -11.02642 -10.86805 -10.79373 -10.63885 -10.37657 -10.33040 -10.19176 -10.06672 -9.89072 -9.83583 -9.61727 -8.98926 -8.38403 -7.85532 -7.03680 -5.84959 -3.13323 1.72897 1.87858 2.60976 2.75197 2.93121 3.37340 3.44226 3.45773 3.48950 4.46970 4.52558 4.66832 4.89736 4.94310 5.04586 5.05147 5.18753 5.19066 5.27601 5.29723 5.34422 5.42616 5.46980 5.48865 5.53530 5.63559 5.72324 5.74595 5.79462 5.84468 6.01332 6.08916 6.12357 6.19763 6.27332 6.30815 6.35970 6.47695 6.52641 6.57820 6.64167 6.69947 6.86736 6.92326 7.12695 7.49473 7.64342 8.11433 8.14444 8.33533 9.45716 10.01313 10.36486 11.37398 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011400 B = 0.003830 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.539542 B = 7307.996266 C = 8716.620276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.067 0.933 5 C 0.117 3.883 6 N -0.584 5.584 7 C 0.589 3.411 8 O -0.534 6.534 9 C -0.018 4.018 10 C 0.040 3.960 11 N -0.526 5.526 12 C 0.095 3.905 13 C 0.650 3.350 14 O -0.572 6.572 15 N -0.516 5.516 16 C 0.102 3.898 17 C 0.116 3.884 18 C -0.148 4.148 19 C 0.178 3.822 20 H 0.052 0.948 21 N -0.718 5.718 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.010 4.010 25 N -0.931 5.931 26 Si 0.902 3.098 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.292 1.292 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.189 0.811 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.047 0.953 47 H 0.075 0.925 48 H 0.384 0.616 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.830 11.859 -2.283 13.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.085 0.915 5 C -0.004 4.004 6 N -0.316 5.316 7 C 0.374 3.626 8 O -0.410 6.410 9 C -0.126 4.126 10 C -0.087 4.087 11 N -0.243 5.243 12 C -0.046 4.046 13 C 0.353 3.647 14 O -0.451 6.451 15 N -0.237 5.237 16 C -0.039 4.039 17 C -0.007 4.007 18 C -0.189 4.189 19 C 0.068 3.932 20 H 0.070 0.930 21 N -0.360 5.360 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.206 4.206 25 N -0.580 5.580 26 Si 0.734 3.266 27 H -0.207 1.207 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.206 0.794 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.086 0.914 46 H 0.065 0.935 47 H 0.094 0.906 48 H 0.219 0.781 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.054 12.481 -2.757 14.599 hybrid contribution 0.985 -0.526 0.356 1.172 sum -6.069 11.955 -2.401 13.621 Atomic orbital electron populations 1.21858 0.96763 1.01104 1.01367 1.21415 0.94295 0.95593 1.03482 1.21748 0.97405 0.96241 0.96841 0.91509 1.21807 0.98907 0.80946 0.98773 1.48139 1.09052 1.06297 1.68081 1.16872 0.85946 0.82222 0.77596 1.90832 1.13348 1.85946 1.50920 1.19792 1.10352 0.93843 0.88612 1.21733 1.01293 0.86551 0.99171 1.44775 1.53481 1.16465 1.09593 1.21833 0.97769 0.93587 0.91431 1.16069 0.82667 0.84190 0.81795 1.91022 1.60781 1.27499 1.65762 1.45244 1.53989 1.14947 1.09539 1.21758 1.01324 1.03582 0.77264 1.21747 0.78536 1.00146 1.00234 1.22526 1.01943 0.99239 0.95238 1.20231 0.89689 0.90581 0.92733 0.93006 1.42469 1.19108 1.63959 1.10502 1.19254 0.93557 1.26951 0.97096 0.91218 1.24683 0.98489 1.01414 0.96012 1.69649 1.37999 1.48114 1.02221 0.86191 0.84302 0.78954 0.77150 1.20652 1.21993 1.21957 0.92758 0.93367 0.93127 0.91957 0.90405 0.90234 0.89284 0.79368 0.88906 0.90576 0.90334 0.91125 0.89355 0.89969 0.89364 0.91365 0.93450 0.90619 0.78105 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 37.16 0.36 -1.57 16 2 C -0.11 -1.62 5.19 -26.74 -0.14 -1.76 16 3 C -0.10 -1.52 2.14 -90.50 -0.19 -1.72 16 4 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 5 C 0.12 1.79 5.03 -3.70 -0.02 1.77 16 6 N -0.58 -8.60 2.97 -174.32 -0.52 -9.12 16 7 C 0.59 8.84 7.06 -12.86 -0.09 8.75 16 8 O -0.53 -9.44 16.52 5.19 0.09 -9.35 16 9 C -0.02 -0.24 4.58 -81.91 -0.37 -0.61 16 10 C 0.04 0.45 11.39 -16.34 -0.19 0.27 16 11 N -0.53 -6.15 3.12 -128.78 -0.40 -6.55 16 12 C 0.10 0.74 11.16 59.85 0.67 1.41 16 13 C 0.65 9.51 8.49 -87.08 -0.74 8.77 16 14 O -0.57 -9.92 17.35 5.16 0.09 -9.83 16 15 N -0.52 -6.97 3.21 -124.82 -0.40 -7.37 16 16 C 0.10 1.13 10.92 59.85 0.65 1.79 16 17 C 0.12 1.72 6.06 -3.72 -0.02 1.70 16 18 C -0.15 -2.29 5.78 -26.61 -0.15 -2.44 16 19 C 0.18 3.07 2.53 -67.89 -0.17 2.90 16 20 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 21 N -0.72 -15.43 3.72 -53.38 -0.20 -15.63 16 22 C -0.24 -5.91 9.93 -15.06 -0.15 -6.06 16 23 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 24 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -25.97 13.06 55.49 0.72 -25.24 16 26 Si 0.90 21.15 29.55 -169.99 -5.02 16.12 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.35 7.69 -51.93 -0.40 0.95 16 35 H 0.08 1.34 6.64 -51.93 -0.34 1.00 16 36 H 0.09 1.35 5.71 -51.93 -0.30 1.06 16 37 H 0.19 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.09 0.77 7.68 -51.93 -0.40 0.37 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 43 H 0.08 0.86 7.90 -51.93 -0.41 0.45 16 44 H 0.09 1.54 7.74 -51.93 -0.40 1.14 16 45 H 0.07 0.95 6.38 -51.93 -0.33 0.62 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 48 H 0.38 8.84 5.94 -40.82 -0.24 8.59 16 49 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 392.28 15.07 5.91 5.91 Total: -1.00 -31.84 392.28 -8.17 -40.01 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -7.79 Total: 8.23 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: -0.66 Total: 12.83 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -0.80 Total: -63.92 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.18 Total: -19.19 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.84 -8.17 -40.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037974591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.414 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds