Wall clock time and date at job start Sat Apr 11 2020 04:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47114 * 2 1 4 4 N 1.46506 * 109.47227 * 119.99614 * 2 1 3 5 5 C 1.35849 * 126.13642 * 300.16344 * 4 2 1 6 6 N 1.30173 * 109.00096 * 180.28810 * 5 4 2 7 7 C 1.35753 * 108.87018 * 359.73918 * 6 5 4 8 8 C 1.47318 * 126.23753 * 179.97438 * 7 6 5 9 9 O 1.21627 * 120.00055 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99816 * 359.97438 * 8 7 6 11 11 C 1.46510 * 119.99676 * 174.92869 * 10 8 7 12 12 C 1.52990 * 109.49970 * 59.92787 * 11 10 8 13 13 O 1.42909 * 109.46994 * 54.27114 * 12 11 10 14 14 C 1.53044 * 109.49673 * 299.86225 * 11 10 8 15 15 C 1.53043 * 109.53511 * 301.41683 * 14 11 10 16 16 C 1.53183 * 109.31440 * 298.63181 * 15 14 11 17 17 N 1.46931 * 108.77838 * 54.63906 * 16 15 14 18 18 C 1.36933 * 120.63248 * 126.40739 * 17 16 15 19 19 H 1.07999 * 120.00007 * 330.21961 * 18 17 16 20 20 C 1.38809 * 119.99695 * 150.21570 * 18 17 16 21 21 N 1.31618 * 120.00228 * 341.55786 * 20 18 17 22 22 Si 1.86805 * 119.99831 * 161.55695 * 20 18 17 23 23 H 1.48506 * 109.47166 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47086 * 119.99879 * 22 20 18 25 25 H 1.48501 * 109.47213 * 239.99978 * 22 20 18 26 26 C 1.46996 * 118.75035 * 306.39689 * 17 16 15 27 27 C 1.35379 * 126.13217 * 119.99780 * 4 2 1 28 28 H 1.09000 * 109.46941 * 300.00357 * 1 2 3 29 29 H 1.08994 * 109.46938 * 60.00222 * 1 2 3 30 30 H 1.09000 * 109.46771 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47452 * 239.99752 * 2 1 3 32 32 H 1.09003 * 109.47249 * 299.99741 * 3 2 1 33 33 H 1.09000 * 109.47508 * 59.99990 * 3 2 1 34 34 H 1.09007 * 109.47375 * 180.02562 * 3 2 1 35 35 H 1.07997 * 125.49528 * 359.97438 * 5 4 2 36 36 H 0.96994 * 120.00195 * 354.93060 * 10 8 7 37 37 H 1.09001 * 109.47300 * 174.27434 * 12 11 10 38 38 H 1.09002 * 109.47092 * 294.27685 * 12 11 10 39 39 H 0.96698 * 113.99825 * 179.97438 * 13 12 11 40 40 H 1.08994 * 109.45842 * 61.43486 * 14 11 10 41 41 H 1.09003 * 109.45685 * 181.39547 * 14 11 10 42 42 H 1.08991 * 109.49826 * 58.59082 * 15 14 11 43 43 H 1.09008 * 109.49349 * 178.65116 * 15 14 11 44 44 H 1.09003 * 109.58679 * 174.42662 * 16 15 14 45 45 H 1.09003 * 109.59248 * 294.70990 * 16 15 14 46 46 H 0.97002 * 119.99665 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.58109 * 293.81976 * 26 17 16 48 48 H 1.09009 * 109.62582 * 173.37471 * 26 17 16 49 49 H 1.07996 * 126.56976 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1963 5 6 1.7657 -0.3385 2.4838 6 7 2.3671 -1.1763 3.2781 7 6 3.0223 -2.0991 2.5283 8 6 3.8271 -3.2228 3.0378 9 8 4.3675 -3.9858 2.2599 10 7 3.9646 -3.4054 4.3661 11 6 4.6709 -4.5842 4.8741 12 6 6.1080 -4.5840 4.3494 13 8 6.7350 -3.3425 4.6780 14 6 3.9549 -5.8517 4.4019 15 6 2.5072 -5.8366 4.8981 16 6 2.4968 -5.8177 6.4298 17 7 3.3057 -4.6824 6.8943 18 6 2.7840 -3.7645 7.7663 19 1 1.7245 -3.5549 7.7598 20 6 3.6168 -3.1034 8.6585 21 7 4.8088 -3.5907 8.9308 22 14 3.0459 -1.5221 9.4728 23 1 1.6773 -1.1891 9.0023 24 1 3.0320 -1.7015 10.9469 25 1 3.9743 -0.4190 9.1171 26 6 4.6857 -4.5506 6.4056 27 6 2.7999 -1.7958 1.2168 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.1670 0.5038 2.7976 36 1 3.5960 -2.7565 4.9856 37 1 6.6622 -5.4034 4.8073 38 1 6.0996 -4.7114 3.2669 39 1 7.6507 -3.2722 4.3756 40 1 3.9650 -5.8900 3.3127 41 1 4.4664 -6.7277 4.8007 42 1 2.0022 -4.9479 4.5199 43 1 1.9911 -6.7280 4.5413 44 1 1.4729 -5.7073 6.7870 45 1 2.9179 -6.7486 6.8097 46 1 5.3909 -3.1284 9.5540 47 1 5.2876 -5.3772 6.7834 48 1 5.1060 -3.6043 6.7463 49 1 3.1786 -2.3321 0.3593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724640513.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:49:11 Heat of formation + Delta-G solvation = -2.431762 kcal Electronic energy + Delta-G solvation = -31063.587195 eV Core-core repulsion = 27027.435195 eV Total energy + Delta-G solvation = -4036.152000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.14854 -39.59203 -37.17761 -36.14330 -35.74182 -33.52401 -32.39126 -31.22721 -30.27203 -29.75510 -28.96719 -27.80407 -25.29524 -24.94045 -23.49350 -23.11939 -22.10049 -20.58329 -20.48398 -19.48905 -18.33278 -17.56569 -16.78136 -16.62463 -16.21006 -15.57663 -15.12383 -14.99264 -14.55656 -14.33529 -14.15825 -13.94793 -13.86330 -13.71014 -13.45963 -13.20101 -12.94964 -12.87341 -12.71950 -12.60683 -12.29926 -12.18401 -11.85963 -11.75883 -11.68137 -11.33616 -11.00398 -10.87609 -10.62533 -10.34296 -10.08576 -10.04065 -9.86849 -9.74577 -9.72243 -9.51269 -9.44534 -8.85495 -8.51922 -8.38590 -8.08657 -6.56636 -5.70614 -3.13361 1.80472 2.53843 2.67260 3.46139 3.54325 3.56965 3.94901 4.06546 4.12214 4.41596 4.51229 4.58904 4.63545 4.69094 4.82541 5.01174 5.14542 5.20282 5.28675 5.34098 5.43093 5.52847 5.55546 5.62964 5.64032 5.72939 5.84863 5.93195 5.95752 6.09668 6.12985 6.23674 6.44985 6.50117 6.59954 6.61347 6.63566 6.79989 6.93947 7.07552 7.10149 7.22012 7.47334 7.70355 7.91730 7.95106 8.21080 8.50082 8.55097 8.99514 9.28848 9.92604 10.50779 11.37808 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011008 B = 0.004103 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.022364 B = 6822.017064 C = 7932.073707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.126 3.874 3 C -0.164 4.164 4 N -0.456 5.456 5 C 0.181 3.819 6 N -0.451 5.451 7 C -0.050 4.050 8 C 0.600 3.400 9 O -0.567 6.567 10 N -0.667 5.667 11 C 0.156 3.844 12 C 0.068 3.932 13 O -0.559 6.559 14 C -0.119 4.119 15 C -0.129 4.129 16 C 0.144 3.856 17 N -0.588 5.588 18 C -0.255 4.255 19 H 0.065 0.935 20 C 0.008 3.992 21 N -0.897 5.897 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.292 1.292 25 H -0.288 1.288 26 C 0.177 3.823 27 C 0.021 3.979 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.204 0.796 36 H 0.416 0.584 37 H 0.042 0.958 38 H 0.062 0.938 39 H 0.366 0.634 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.016 0.984 46 H 0.253 0.747 47 H 0.031 0.969 48 H 0.097 0.903 49 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 6.238 -19.736 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.024 3.976 3 C -0.222 4.222 4 N -0.139 5.139 5 C -0.103 4.103 6 N -0.169 5.169 7 C -0.179 4.179 8 C 0.386 3.614 9 O -0.448 6.448 10 N -0.315 5.315 11 C 0.068 3.932 12 C -0.011 4.011 13 O -0.362 6.362 14 C -0.157 4.157 15 C -0.168 4.168 16 C 0.018 3.982 17 N -0.311 5.311 18 C -0.384 4.384 19 H 0.083 0.917 20 C -0.191 4.191 21 N -0.540 5.540 22 Si 0.728 3.272 23 H -0.202 1.202 24 H -0.220 1.220 25 H -0.215 1.215 26 C 0.051 3.949 27 C -0.117 4.117 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.221 0.779 36 H 0.253 0.747 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.210 0.790 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.034 0.966 46 H 0.063 0.937 47 H 0.049 0.951 48 H 0.115 0.885 49 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.799 5.942 -19.044 20.519 hybrid contribution 0.154 1.029 -0.381 1.108 sum -4.646 6.971 -19.425 21.154 Atomic orbital electron populations 1.22188 0.93012 1.03476 1.03495 1.21506 0.95640 0.94115 0.86376 1.22187 1.02378 0.94106 1.03490 1.45626 1.38144 1.22119 1.08043 1.25019 1.04327 1.02311 0.78611 1.70751 1.10031 1.03802 1.32364 1.20814 1.06587 1.00273 0.90244 1.16888 0.79287 0.82395 0.82873 1.90646 1.49939 1.46992 1.57257 1.45636 1.54891 1.25151 1.05827 1.21229 0.88266 0.84853 0.98884 1.22631 0.93363 0.85591 0.99524 1.86590 1.29654 1.37467 1.82491 1.21715 0.96571 0.96371 1.01062 1.21930 0.95618 1.00365 0.98914 1.20944 0.95534 0.90637 0.91083 1.44019 1.10608 1.25513 1.50921 1.19155 0.93505 1.14872 1.10872 0.91730 1.25042 0.97255 1.00016 0.96790 1.70046 1.09842 1.38073 1.36076 0.86298 0.78307 0.84052 0.78579 1.20152 1.21962 1.21485 1.20962 0.86539 1.02714 0.84696 1.22502 0.98518 0.90983 0.99678 0.91381 0.90411 0.91542 0.88098 0.90410 0.91384 0.91559 0.77911 0.74687 0.93985 0.92027 0.78951 0.91331 0.92028 0.92329 0.93285 0.92935 0.96566 0.93722 0.95083 0.88484 0.80025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 9.24 37.16 0.34 -0.52 16 2 C 0.13 0.81 3.57 -67.93 -0.24 0.57 16 3 C -0.16 -0.87 9.24 37.15 0.34 -0.52 16 4 N -0.46 -4.88 2.59 -111.24 -0.29 -5.17 16 5 C 0.18 2.28 11.53 -89.91 -1.04 1.25 16 6 N -0.45 -7.83 11.01 -11.03 -0.12 -7.95 16 7 C -0.05 -0.87 6.98 -83.09 -0.58 -1.45 16 8 C 0.60 11.94 7.22 -12.57 -0.09 11.85 16 9 O -0.57 -11.65 13.20 5.25 0.07 -11.58 16 10 N -0.67 -14.10 3.93 -48.59 -0.19 -14.29 16 11 C 0.16 3.25 0.45 -131.70 -0.06 3.19 16 12 C 0.07 1.29 5.61 37.15 0.21 1.50 16 13 O -0.56 -10.73 13.08 -35.23 -0.46 -11.19 16 14 C -0.12 -2.29 4.48 -26.69 -0.12 -2.41 16 15 C -0.13 -2.50 5.93 -26.61 -0.16 -2.66 16 16 C 0.14 3.17 6.52 -3.71 -0.02 3.15 16 17 N -0.59 -14.94 2.88 -172.26 -0.50 -15.43 16 18 C -0.25 -7.06 9.55 -15.06 -0.14 -7.21 16 19 H 0.07 1.79 7.90 -52.49 -0.41 1.37 16 20 C 0.01 0.23 4.86 -17.43 -0.08 0.15 16 21 N -0.90 -26.43 11.42 55.49 0.63 -25.79 16 22 Si 0.90 22.27 29.59 -169.99 -5.03 17.24 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 26 C 0.18 4.35 3.86 -3.67 -0.01 4.34 16 27 C 0.02 0.29 11.22 -16.64 -0.19 0.10 16 28 H 0.07 0.36 7.93 -51.93 -0.41 -0.05 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.10 0.53 8.07 -51.93 -0.42 0.11 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.37 7.94 -51.93 -0.41 -0.05 16 34 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 35 H 0.20 1.83 8.06 -52.49 -0.42 1.40 16 36 H 0.42 9.70 8.17 -40.82 -0.33 9.37 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.17 6.19 -51.93 -0.32 0.85 16 39 H 0.37 5.09 9.12 45.56 0.42 5.51 16 40 H 0.07 1.33 6.39 -51.93 -0.33 1.00 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.22 7.53 -51.93 -0.39 0.83 16 43 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 44 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.10 2.72 6.11 -51.92 -0.32 2.40 16 49 H 0.18 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 390.28 15.07 5.88 5.88 Total: -1.00 -34.54 390.28 -8.98 -43.52 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -7.14 Total: 13.44 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -1.84 Total: 11.32 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -0.46 Total: -68.63 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.39 Total: -22.77 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.54 -8.98 -43.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724640513.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.091 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds