Wall clock time and date at job start Sat Apr 11 2020 04:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47359 * 2 1 4 4 N 1.46496 * 109.47175 * 179.97438 * 3 2 1 5 5 N 1.39929 * 125.75395 * 269.99689 * 4 3 2 6 6 C 1.30446 * 108.90259 * 180.02562 * 5 4 3 7 7 C 1.41292 * 108.01779 * 359.74360 * 6 5 4 8 8 C 1.47428 * 126.41748 * 180.28409 * 7 6 5 9 9 O 1.21605 * 120.00382 * 132.08675 * 8 7 6 10 10 N 1.34777 * 119.99957 * 312.09015 * 8 7 6 11 11 C 1.47149 * 120.97985 * 4.04185 * 10 8 7 12 12 C 1.52885 * 108.60577 * 230.49613 * 11 10 8 13 13 O 1.42962 * 109.30004 * 307.94022 * 12 11 10 14 14 C 1.42962 * 114.16971 * 62.44471 * 13 12 11 15 15 H 1.08996 * 109.55439 * 57.36895 * 14 13 12 16 16 C 1.52999 * 109.51309 * 177.49598 * 14 13 12 17 17 N 1.46501 * 109.46860 * 299.74755 * 16 14 13 18 18 C 1.36939 * 119.99505 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00485 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00001 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99533 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00235 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47249 * 89.99923 * 22 20 18 24 24 H 1.48500 * 109.47069 * 209.99812 * 22 20 18 25 25 H 1.48496 * 109.46938 * 329.99952 * 22 20 18 26 26 C 1.47157 * 120.98239 * 184.31882 * 10 8 7 27 27 C 1.34263 * 125.75580 * 89.99961 * 4 3 2 28 28 C 1.50702 * 126.29130 * 359.97438 * 27 4 3 29 29 H 1.08999 * 109.47215 * 300.00201 * 1 2 3 30 30 H 1.09000 * 109.47094 * 60.00206 * 1 2 3 31 31 H 1.08993 * 109.47259 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47215 * 239.99799 * 2 1 3 33 33 H 1.09000 * 109.47094 * 119.99794 * 2 1 3 34 34 H 1.08999 * 109.47122 * 59.99742 * 3 2 1 35 35 H 1.09000 * 109.46849 * 299.99943 * 3 2 1 36 36 H 1.07995 * 125.99739 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.68436 * 350.27620 * 11 10 8 38 38 H 1.09006 * 109.68561 * 110.83374 * 11 10 8 39 39 H 1.08999 * 109.58036 * 187.91873 * 12 11 10 40 40 H 1.09000 * 109.36312 * 67.81773 * 12 11 10 41 41 H 1.09003 * 109.47004 * 59.74479 * 16 14 13 42 42 H 1.08993 * 109.47118 * 179.74547 * 16 14 13 43 43 H 0.96994 * 120.00529 * 0.02562 * 17 16 14 44 44 H 0.97008 * 119.99488 * 179.97438 * 21 20 18 45 45 H 1.08994 * 109.68042 * 249.16405 * 26 10 8 46 46 H 1.09003 * 109.68017 * 9.68701 * 26 10 8 47 47 H 1.09007 * 109.46783 * 89.99905 * 28 27 4 48 48 H 1.08996 * 109.47366 * 210.00417 * 28 27 4 49 49 H 1.09001 * 109.47166 * 330.00392 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 7 4.3221 1.4427 1.1365 6 6 5.5707 1.4431 0.7589 7 6 5.6001 1.4372 -0.6537 8 6 6.8044 1.4297 -1.5041 9 8 6.8914 0.6440 -2.4282 10 7 7.8090 2.2935 -1.2572 11 6 7.7661 3.1926 -0.0931 12 6 8.0541 4.6175 -0.5664 13 8 9.2615 4.6262 -1.3318 14 6 9.2048 3.8384 -2.5235 15 1 8.3833 4.1843 -3.1507 16 6 10.5232 3.9728 -3.2881 17 7 10.7385 5.3767 -3.6471 18 6 11.8617 5.7415 -4.3403 19 1 12.5890 4.9945 -4.6220 20 6 12.0661 7.0718 -4.6801 21 7 11.1801 7.9824 -4.3363 22 14 13.5979 7.5695 -5.6264 23 1 13.3244 7.4974 -7.0842 24 1 13.9756 8.9586 -5.2617 25 1 14.7114 6.6480 -5.2855 26 6 8.9785 2.3697 -2.1472 27 6 4.2900 1.4423 -1.0886 28 6 3.8261 1.4415 -2.5225 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 6.4312 1.4429 1.4115 37 1 6.7782 3.1520 0.3658 38 1 8.5212 2.8902 0.6325 39 1 8.1653 5.2737 0.2968 40 1 7.2279 4.9665 -1.1858 41 1 11.3445 3.6284 -2.6596 42 1 10.4809 3.3684 -4.1941 43 1 10.0860 6.0479 -3.3932 44 1 11.3231 8.9121 -4.5735 45 1 9.8577 1.9830 -1.6320 46 1 8.7933 1.7839 -3.0476 47 1 3.7139 2.4691 -2.8685 48 1 4.5611 0.9276 -3.1419 49 1 2.8676 0.9274 -2.5940 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724824749.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:49:19 Heat of formation + Delta-G solvation = 10.840907 kcal Electronic energy + Delta-G solvation = -29373.322957 eV Core-core repulsion = 25337.746504 eV Total energy + Delta-G solvation = -4035.576454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.85585 -39.95541 -38.09380 -35.96253 -34.96686 -34.31436 -32.81567 -32.31309 -31.57873 -30.12863 -28.46794 -27.46107 -26.86862 -25.39957 -23.49744 -23.03536 -22.58685 -21.74195 -20.76723 -20.41734 -18.98608 -17.67288 -17.04804 -16.54624 -16.44709 -16.00867 -15.69203 -15.51912 -15.18704 -15.00539 -14.64001 -14.43481 -14.30027 -13.88550 -13.86388 -13.47095 -13.13153 -13.11922 -12.97247 -12.81608 -12.65492 -12.63518 -12.40467 -12.35621 -12.09085 -11.86815 -11.52191 -11.46867 -11.13241 -10.94138 -10.85530 -10.76072 -10.40699 -10.06333 -9.87627 -9.82033 -9.67837 -9.60164 -8.84397 -8.82789 -8.43338 -6.84879 -5.69295 -2.97637 1.31571 1.96910 2.01055 2.77285 3.10728 3.48384 3.53142 3.55195 4.00162 4.02086 4.16994 4.26530 4.40663 4.54632 4.61288 4.62581 4.72966 4.82075 4.85343 4.93175 5.01268 5.08225 5.15019 5.15792 5.20393 5.24710 5.37280 5.40203 5.45276 5.49674 5.55980 5.63505 5.65901 5.68585 5.72585 5.78958 5.94527 6.02659 6.11786 6.32015 6.42910 6.53855 6.60881 6.74895 7.26706 7.34990 7.52455 7.75594 8.15312 8.48997 9.60683 10.18481 10.54546 11.53534 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.025258 B = 0.002113 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.274200 B =13248.305530 C =13324.388133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.142 4.142 3 C 0.128 3.872 4 N -0.359 5.359 5 N -0.295 5.295 6 C 0.080 3.920 7 C -0.289 4.289 8 C 0.599 3.401 9 O -0.542 6.542 10 N -0.607 5.607 11 C 0.068 3.932 12 C 0.047 3.953 13 O -0.357 6.357 14 C 0.074 3.926 15 H 0.062 0.938 16 C 0.163 3.837 17 N -0.726 5.726 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.087 3.913 27 C 0.147 3.853 28 C -0.105 4.105 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.190 0.810 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.051 0.949 41 H 0.029 0.971 42 H 0.036 0.964 43 H 0.388 0.612 44 H 0.254 0.746 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.086 0.914 48 H 0.102 0.898 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.442 -15.353 11.779 29.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.007 3.993 4 N -0.139 5.139 5 N -0.114 5.114 6 C -0.107 4.107 7 C -0.304 4.304 8 C 0.388 3.612 9 O -0.420 6.420 10 N -0.340 5.340 11 C -0.055 4.055 12 C -0.031 4.031 13 O -0.274 6.274 14 C 0.015 3.985 15 H 0.080 0.920 16 C 0.035 3.965 17 N -0.370 5.370 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.035 4.035 27 C 0.016 3.984 28 C -0.163 4.163 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.207 0.793 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.222 0.778 44 H 0.064 0.936 45 H 0.096 0.904 46 H 0.120 0.880 47 H 0.105 0.895 48 H 0.121 0.879 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.022 -15.673 12.278 30.437 hybrid contribution 0.946 0.486 -0.912 1.401 sum -22.076 -15.187 11.366 29.106 Atomic orbital electron populations 1.21697 0.94017 1.02695 1.02339 1.21948 0.96902 0.95542 1.03671 1.21899 0.73675 0.98828 1.04905 1.48469 1.06609 1.55635 1.03198 1.77165 1.01709 1.25038 1.07531 1.24006 0.95332 0.97867 0.93469 1.19894 0.92738 1.23890 0.93875 1.17285 0.81297 0.79637 0.83005 1.90755 1.80232 1.38875 1.32145 1.47987 1.20523 1.37958 1.27512 1.22579 1.03432 0.91086 0.88399 1.22825 0.88843 0.94887 0.96593 1.88163 1.33888 1.69542 1.35853 1.22788 1.00547 0.88597 0.86544 0.92012 1.20630 0.91672 0.89348 0.94859 1.42212 1.25708 1.02036 1.67060 1.19237 0.98323 0.92369 1.26984 0.91135 1.24744 0.98645 0.95893 1.01793 1.69684 1.35782 1.00950 1.51663 0.86175 0.82710 0.77590 0.79629 1.21798 1.21826 1.20765 1.22344 0.87416 0.98274 0.95504 1.21370 0.89818 0.96148 0.91087 1.20677 1.02983 1.04064 0.88556 0.92158 0.92194 0.91809 0.91167 0.90778 0.88234 0.88589 0.79312 0.88645 0.90387 0.87856 0.93061 0.95336 0.94671 0.77842 0.93617 0.90391 0.88043 0.89548 0.87945 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 9.91 37.16 0.37 -0.13 16 2 C -0.14 -0.73 6.26 -26.73 -0.17 -0.90 16 3 C 0.13 0.73 6.03 -4.04 -0.02 0.71 16 4 N -0.36 -3.35 3.58 -56.61 -0.20 -3.55 16 5 N -0.30 -3.21 12.50 30.86 0.39 -2.82 16 6 C 0.08 0.83 9.65 -16.98 -0.16 0.67 16 7 C -0.29 -3.44 5.17 -105.07 -0.54 -3.99 16 8 C 0.60 8.47 7.36 -12.52 -0.09 8.38 16 9 O -0.54 -9.22 15.53 5.27 0.08 -9.14 16 10 N -0.61 -8.13 3.03 -173.79 -0.53 -8.65 16 11 C 0.07 0.75 5.94 -3.75 -0.02 0.73 16 12 C 0.05 0.61 6.97 37.10 0.26 0.87 16 13 O -0.36 -6.36 10.14 -35.23 -0.36 -6.72 16 14 C 0.07 1.29 2.86 -26.58 -0.08 1.21 16 15 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 16 C 0.16 3.39 5.95 -4.04 -0.02 3.37 16 17 N -0.73 -19.12 5.50 -59.91 -0.33 -19.45 16 18 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 20 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.86 13.06 55.49 0.72 -28.13 16 22 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.09 1.29 5.92 -3.53 -0.02 1.27 16 27 C 0.15 1.52 7.01 -81.60 -0.57 0.95 16 28 C -0.10 -0.85 9.70 36.01 0.35 -0.50 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.37 7.62 -51.93 -0.40 -0.03 16 36 H 0.19 1.48 7.53 -52.49 -0.40 1.08 16 37 H 0.10 0.90 4.70 -51.93 -0.24 0.66 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.39 10.87 7.55 -40.82 -0.31 10.56 16 44 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.10 1.54 7.11 -51.93 -0.37 1.17 16 47 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.10 1.04 7.02 -51.93 -0.36 0.67 16 49 H 0.07 0.42 7.70 -51.93 -0.40 0.02 16 LS Contribution 397.78 15.07 5.99 5.99 Total: -1.00 -36.03 397.78 -8.17 -44.20 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.94 Total: 5.37 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.98 Total: 5.12 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.05 Total: -62.62 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.28 Total: -15.86 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.03 -8.17 -44.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724824749.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.038 kcal (2) G-P(sol) polarization free energy of solvation -36.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds